BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0368.0025.p (344 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF 2,715,099 sequences; 757,237,578 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|NP_243897.1| cell-shape determining protein [Bacillus halodu... 550 e-155 ref|NP_658484.1| FtsA, Cell division protein FtsA [Bacillus anth... 529 e-149 ref|NP_834158.1| Rod shape-determining protein mreB [Bacillus ce... 529 e-149 ref|NP_390681.1| cell-shape determining protein [Bacillus subtil... 523 e-147 gb|AAA22605.1| putative 523 e-147 >ref|NP_243897.1| cell-shape determining protein [Bacillus halodurans] pir||G84028 cell-shape determining protein mreB [imported] - Bacillus halodurans (strain C-125) dbj|BAB06750.1| cell-shape determining protein [Bacillus halodurans] Length = 346 Score = 550 bits (1417), Expect = e-155, Method: Compositional matrix adjust. Identities = 267/344 (77%), Positives = 305/344 (88%) Query: 1 MLGGFTKDLGIDLGTANTLVYVRGKGIVVREPSVVAINTDTKTIEAVGESAKKMIGRTPG 60 M GGF+KD+GIDLGTANTLVYV+GKGIV+REPSVVA TDT TIEAVG AK MIGRTPG Sbjct: 1 MFGGFSKDIGIDLGTANTLVYVKGKGIVLREPSVVAKRTDTGTIEAVGNDAKNMIGRTPG 60 Query: 61 NIRAIRPMKDGVIADFDTTATMIKYFIRQAQKQRSMFQRHPNVMVCVPSGITAVEQRAVE 120 NI A RPMKDGVIADF+TTATM+KYFIRQAQK RS+F R P VMVCVPSGITAVE+RAVE Sbjct: 61 NIVATRPMKDGVIADFETTATMLKYFIRQAQKNRSIFTRKPAVMVCVPSGITAVEKRAVE 120 Query: 121 DATKQAGAREAYIIEEPFAAAIGADLPVWEPTGSMVVDIGGGTTEVAVISLGGIVTSRSV 180 DATKQAGA+ AY +EEPFAAAIGADLPVWEPTGSMVVDIGGGTTEVA+ISLGGIVTS+S+ Sbjct: 121 DATKQAGAKYAYTLEEPFAAAIGADLPVWEPTGSMVVDIGGGTTEVAIISLGGIVTSQSI 180 Query: 181 RVAGDEADDSIIQYIKRQYNLMIGERTSEQLKMDVGSALPLEKTETMEIRGRDLVTGLPK 240 RVAGDE D++IIQYIK+ YNLMIGERT+E LK+++GSA E + M+IRGRDL+TGLPK Sbjct: 181 RVAGDEMDEAIIQYIKKTYNLMIGERTAEALKLEIGSAGSPEGVDNMDIRGRDLLTGLPK 240 Query: 241 TLTITSDEICEALSDTVNAIVEAVKVTLEKCPPELAADIMDRGIVLTGGGALLRNLDKLL 300 T+ +T++EI +ALSDTV I+EAVK TLE+ PPELAADIMDRGIVLTGGGALLRNLDK+L Sbjct: 241 TIEVTAEEISKALSDTVQTIIEAVKNTLEQSPPELAADIMDRGIVLTGGGALLRNLDKVL 300 Query: 301 ARETGMPVIVAENPLDCVVIGTGKALENIHLFKSRTGSSLRSKR 344 + ET MPVIVAE PLDCV IGTG+ALEN+HLF+S+ G + + R Sbjct: 301 SDETNMPVIVAEEPLDCVAIGTGRALENLHLFRSKAGITSSADR 344 >ref|NP_658484.1| FtsA, Cell division protein FtsA [Bacillus anthracis A2012] ref|NP_846898.1| rod shape-determining protein MreB [Bacillus anthracis str. Ames] ref|NP_980837.1| rod shape-determining protein MreB [Bacillus cereus ATCC 10987] gb|AAP28384.1| rod shape-determining protein MreB [Bacillus anthracis str. Ames] gb|AAS43445.1| rod shape-determining protein MreB [Bacillus cereus ATCC 10987] Length = 339 Score = 529 bits (1363), Expect = e-149, Method: Compositional matrix adjust. Identities = 259/333 (77%), Positives = 297/333 (89%) Query: 2 LGGFTKDLGIDLGTANTLVYVRGKGIVVREPSVVAINTDTKTIEAVGESAKKMIGRTPGN 61 GGFT+DLGIDLGTANTLVYV+GKG+V+REPSVVA+ TDTK I AVG AK+MIGRTPGN Sbjct: 4 FGGFTRDLGIDLGTANTLVYVKGKGVVLREPSVVALQTDTKQIVAVGSDAKQMIGRTPGN 63 Query: 62 IRAIRPMKDGVIADFDTTATMIKYFIRQAQKQRSMFQRHPNVMVCVPSGITAVEQRAVED 121 + A+RPMKDGVIAD++TTATM+KY+I+QAQK F R P VMVCVPSGITAVE+RAV D Sbjct: 64 VVALRPMKDGVIADYETTATMMKYYIQQAQKSNGFFSRKPYVMVCVPSGITAVERRAVID 123 Query: 122 ATKQAGAREAYIIEEPFAAAIGADLPVWEPTGSMVVDIGGGTTEVAVISLGGIVTSRSVR 181 AT+QAGAR+AY IEEPFAAAIGA+LPVWEPTGSMVVDIGGGTTEVA+ISLGGIVTS+SVR Sbjct: 124 ATRQAGARDAYPIEEPFAAAIGANLPVWEPTGSMVVDIGGGTTEVAIISLGGIVTSQSVR 183 Query: 182 VAGDEADDSIIQYIKRQYNLMIGERTSEQLKMDVGSALPLEKTETMEIRGRDLVTGLPKT 241 VAGD+ DDSIIQYIK+ YNLMIGERT+E LK+++GSA E E MEIRGRDLV+GLPKT Sbjct: 184 VAGDDMDDSIIQYIKKSYNLMIGERTAEALKLEIGSAGEPEGIEPMEIRGRDLVSGLPKT 243 Query: 242 LTITSDEICEALSDTVNAIVEAVKVTLEKCPPELAADIMDRGIVLTGGGALLRNLDKLLA 301 + I +EI +AL DTV+AIVE+VK TLEK PPELAADIMDRGIVLTGGGALLRNLDK+++ Sbjct: 244 VLIQPEEIADALKDTVDAIVESVKNTLEKTPPELAADIMDRGIVLTGGGALLRNLDKVIS 303 Query: 302 RETGMPVIVAENPLDCVVIGTGKALENIHLFKS 334 ET MPV+VAE+PLDCV IGTGKAL+NI LFK+ Sbjct: 304 EETNMPVLVAEDPLDCVAIGTGKALDNIDLFKT 336 >ref|NP_834158.1| Rod shape-determining protein mreB [Bacillus cereus ATCC 14579] gb|AAP11359.1| Rod shape-determining protein mreB [Bacillus cereus ATCC 14579] Length = 339 Score = 529 bits (1362), Expect = e-149, Method: Compositional matrix adjust. Identities = 259/333 (77%), Positives = 297/333 (89%) Query: 2 LGGFTKDLGIDLGTANTLVYVRGKGIVVREPSVVAINTDTKTIEAVGESAKKMIGRTPGN 61 GGFT+DLGIDLGTANTLVYV+GKG+V+REPSVVA+ TDTK I AVG AK+MIGRTPGN Sbjct: 4 FGGFTRDLGIDLGTANTLVYVKGKGVVLREPSVVALQTDTKQIVAVGSDAKQMIGRTPGN 63 Query: 62 IRAIRPMKDGVIADFDTTATMIKYFIRQAQKQRSMFQRHPNVMVCVPSGITAVEQRAVED 121 + A+RPMKDGVIAD++TTATM+KY+I+QAQK F R P VMVCVPSGITAVE+RAV D Sbjct: 64 VVALRPMKDGVIADYETTATMMKYYIQQAQKSNGFFSRKPYVMVCVPSGITAVERRAVID 123 Query: 122 ATKQAGAREAYIIEEPFAAAIGADLPVWEPTGSMVVDIGGGTTEVAVISLGGIVTSRSVR 181 AT+QAGAR+AY IEEPFAAAIGA+LPVWEPTGSMVVDIGGGTTEVA+ISLGGIVTS+SVR Sbjct: 124 ATRQAGARDAYPIEEPFAAAIGANLPVWEPTGSMVVDIGGGTTEVAIISLGGIVTSQSVR 183 Query: 182 VAGDEADDSIIQYIKRQYNLMIGERTSEQLKMDVGSALPLEKTETMEIRGRDLVTGLPKT 241 VAGD+ DDSIIQYIK+ YNLMIGERT+E LK+++GSA E E MEIRGRDLV+GLPKT Sbjct: 184 VAGDDMDDSIIQYIKKSYNLMIGERTAEALKLEIGSAGEPEGIEPMEIRGRDLVSGLPKT 243 Query: 242 LTITSDEICEALSDTVNAIVEAVKVTLEKCPPELAADIMDRGIVLTGGGALLRNLDKLLA 301 + I +EI +AL DTV+AIVE+VK TLEK PPELAADIMDRGIVLTGGGALLRNLDK+++ Sbjct: 244 VLIQPEEIADALKDTVDAIVESVKNTLEKTPPELAADIMDRGIVLTGGGALLRNLDKVIS 303 Query: 302 RETGMPVIVAENPLDCVVIGTGKALENIHLFKS 334 ET MPV+VAE+PLDCV IGTGKAL+NI LFK+ Sbjct: 304 EETKMPVLVAEDPLDCVAIGTGKALDNIDLFKT 336 >ref|NP_390681.1| cell-shape determining protein [Bacillus subtilis] sp|Q01465|MREB_BACSU Rod shape-determining protein mreB pir||D69660 rod shape-determining protein envB - Bacillus subtilis gb|AAA22397.1| MreB protein emb|CAB14763.1| cell-shape determining protein [Bacillus subtilis subsp. subtilis str. 168] Length = 337 Score = 523 bits (1348), Expect = e-147, Method: Compositional matrix adjust. Identities = 255/336 (75%), Positives = 296/336 (88%) Query: 1 MLGGFTKDLGIDLGTANTLVYVRGKGIVVREPSVVAINTDTKTIEAVGESAKKMIGRTPG 60 M G +DLGIDLGTANTLV+V+GKGIVVREPSVVA+ TDTK+I AVG AK MIGRTPG Sbjct: 1 MFGIGARDLGIDLGTANTLVFVKGKGIVVREPSVVALQTDTKSIVAVGNDAKNMIGRTPG 60 Query: 61 NIRAIRPMKDGVIADFDTTATMIKYFIRQAQKQRSMFQRHPNVMVCVPSGITAVEQRAVE 120 N+ A+RPMKDGVIAD++TTATM+KY+I QA K + MF R P VMVCVPSGITAVE+RAV Sbjct: 61 NVVALRPMKDGVIADYETTATMMKYYINQAIKNKGMFTRKPYVMVCVPSGITAVEERAVI 120 Query: 121 DATKQAGAREAYIIEEPFAAAIGADLPVWEPTGSMVVDIGGGTTEVAVISLGGIVTSRSV 180 DAT+QAGAR+AY IEEPFAAAIGA+LPVWEPTGSMVVDIGGGTTEVA+ISLGGIVTS+S+ Sbjct: 121 DATRQAGARDAYPIEEPFAAAIGANLPVWEPTGSMVVDIGGGTTEVAIISLGGIVTSQSI 180 Query: 181 RVAGDEADDSIIQYIKRQYNLMIGERTSEQLKMDVGSALPLEKTETMEIRGRDLVTGLPK 240 RVAGDE DD+II YI++ YNLMIG+RT+E +KM++GSA E+++ MEIRGRDL+TGLPK Sbjct: 181 RVAGDEMDDAIINYIRKTYNLMIGDRTAEAIKMEIGSAEAPEESDNMEIRGRDLLTGLPK 240 Query: 241 TLTITSDEICEALSDTVNAIVEAVKVTLEKCPPELAADIMDRGIVLTGGGALLRNLDKLL 300 T+ IT EI AL DTV+ IVEAVK TLEK PPELAADIMDRGIVLTGGGALLRNLDK++ Sbjct: 241 TIEITGKEISNALRDTVSTIVEAVKSTLEKTPPELAADIMDRGIVLTGGGALLRNLDKVI 300 Query: 301 ARETGMPVIVAENPLDCVVIGTGKALENIHLFKSRT 336 + ET MPV++AE+PLDCV IGTGKALE+IHLFK +T Sbjct: 301 SEETKMPVLIAEDPLDCVAIGTGKALEHIHLFKGKT 336 >gb|AAA22605.1| putative Length = 337 Score = 523 bits (1346), Expect = e-147, Method: Compositional matrix adjust. Identities = 255/336 (75%), Positives = 296/336 (88%) Query: 1 MLGGFTKDLGIDLGTANTLVYVRGKGIVVREPSVVAINTDTKTIEAVGESAKKMIGRTPG 60 M G +DLGIDLGTANTLV+V+GKGIVVREPSVVA+ TDTK+I AVG AK MIGRTPG Sbjct: 1 MFGIGARDLGIDLGTANTLVFVKGKGIVVREPSVVALQTDTKSIVAVGNDAKNMIGRTPG 60 Query: 61 NIRAIRPMKDGVIADFDTTATMIKYFIRQAQKQRSMFQRHPNVMVCVPSGITAVEQRAVE 120 N+ A+RPMKDGVIAD++TTATM+KY+I QA K + MF R P VMVCVPSGITAVE+RAV Sbjct: 61 NVVALRPMKDGVIADYETTATMMKYYINQAIKNKGMFARKPYVMVCVPSGITAVEERAVI 120 Query: 121 DATKQAGAREAYIIEEPFAAAIGADLPVWEPTGSMVVDIGGGTTEVAVISLGGIVTSRSV 180 DAT+QAGAR+AY IEEPFAAAIGA+LPVWEPTGSMVVDIGGGTTEVA+ISLGGIVTS+S+ Sbjct: 121 DATRQAGARDAYPIEEPFAAAIGANLPVWEPTGSMVVDIGGGTTEVAIISLGGIVTSQSI 180 Query: 181 RVAGDEADDSIIQYIKRQYNLMIGERTSEQLKMDVGSALPLEKTETMEIRGRDLVTGLPK 240 RVAGDE DD+II YI++ YNLMIG+RT+E +KM++GSA E+++ MEIRGRDL+TGLPK Sbjct: 181 RVAGDEMDDAIINYIRKTYNLMIGDRTAEAIKMEIGSAEAPEESDNMEIRGRDLLTGLPK 240 Query: 241 TLTITSDEICEALSDTVNAIVEAVKVTLEKCPPELAADIMDRGIVLTGGGALLRNLDKLL 300 T+ IT EI AL DTV+ IVEAVK TLEK PPELAADIMDRGIVLTGGGALLRNLDK++ Sbjct: 241 TIEITGKEISNALRDTVSTIVEAVKSTLEKTPPELAADIMDRGIVLTGGGALLRNLDKVI 300 Query: 301 ARETGMPVIVAENPLDCVVIGTGKALENIHLFKSRT 336 + ET MPV++AE+PLDCV IGTGKALE+IHLFK +T Sbjct: 301 SEETKMPVLIAEDPLDCVAIGTGKALEHIHLFKGKT 336 Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF Posted date: Mar 24, 2004 1:53 AM Number of letters in database: 757,237,578 Number of sequences in database: 2,715,099 Lambda K H 0.317 0.135 0.374 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 2715099 Number of Hits to DB: 467,958,472 Number of extensions: 18812190 Number of successful extensions: 62154 Number of sequences better than 1.0e-05: 1681 Number of HSP's gapped: 61251 Number of HSP's successfully gapped: 1683 Length of query: 344 Length of database: 757,237,578 Length adjustment: 126 Effective length of query: 218 Effective length of database: 415,135,104 Effective search space: 90499452672 Effective search space used: 90499452672 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.6 bits) S2: 126 (53.1 bits)