BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0368.0022.p (219 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF 2,715,099 sequences; 757,237,578 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|NP_834155.1| Cell division inhibitor MinC [Bacillus cereus A... 160 3e-38 ref|NP_658481.1| minC, Bacterial proteins involved in chromosoma... 160 3e-38 ref|NP_390678.1| minC [Bacillus subtilis] >gi|400259|sp|Q01463|M... 157 1e-37 ref|NP_243894.1| septum site-determining protein [Bacillus halod... 150 3e-35 ref|NP_465070.1| similar to cell-division inhibition (septum pla... 138 1e-31 >ref|NP_834155.1| Cell division inhibitor MinC [Bacillus cereus ATCC 14579] gb|AAP11356.1| Cell division inhibitor MinC [Bacillus cereus ATCC 14579] Length = 228 Score = 160 bits (404), Expect = 3e-38, Method: Compositional matrix adjust. Identities = 83/216 (38%), Positives = 140/216 (64%), Gaps = 6/216 (2%) Query: 4 QSKHVRIKGIKDGLVFLLDDKCPFEDLLSELRYKLEHSHQNILTGPIVHVDIKLGNRSVS 63 + ++V IKG KDG+ LDD C F +LL EL KL + + ++ V +K+GNR ++ Sbjct: 5 KQQNVTIKGTKDGITLHLDDCCSFSELLMELDEKLSTHYYDGDGRSLIEVHVKVGNRYLT 64 Query: 64 EEEKEAVLDILKSQGNLLVRSVEA-----LEEPGGKDTDALFMVSGMIRSGQVLHHEGNL 118 E ++E + +++++ NL+V S+E+ E K+ + +S ++RSGQVLH +GNL Sbjct: 65 EVQQEEIRTLIRNKKNLVVDSIESDVITKAEAIAWKEETEIVPISKIVRSGQVLHVKGNL 124 Query: 119 LFLGDVNPGGSITCTGDIYILGALRGMAHAGVGGNQESIIAASLLSPTQLRIADVISRPP 178 L +GDVNPGG++ G+I+++G+LRG+AHAG G+ +++IAAS+++P QLRI+DV R P Sbjct: 125 LLIGDVNPGGTVIAGGNIFVVGSLRGIAHAGYYGDSDAVIAASVMNPMQLRISDVAMRAP 184 Query: 179 DEWGTRESSMEFAYLS-SGAMQIDKIHNIVKLRQGL 213 +E + E AY++ + + +D++ + LR L Sbjct: 185 EEKEDGAEAAECAYINENNHIVVDRLQLLTHLRPNL 220 >ref|NP_658481.1| minC, Bacterial proteins involved in chromosomal partioning [Bacillus anthracis A2012] ref|NP_846895.1| septum site-determining protein MinC [Bacillus anthracis str. Ames] ref|NP_980834.1| septum site-determining protein MinC [Bacillus cereus ATCC 10987] gb|AAP28381.1| septum site-determining protein MinC [Bacillus anthracis str. Ames] gb|AAS43442.1| septum site-determining protein MinC [Bacillus cereus ATCC 10987] Length = 228 Score = 160 bits (404), Expect = 3e-38, Method: Compositional matrix adjust. Identities = 83/216 (38%), Positives = 140/216 (64%), Gaps = 6/216 (2%) Query: 4 QSKHVRIKGIKDGLVFLLDDKCPFEDLLSELRYKLEHSHQNILTGPIVHVDIKLGNRSVS 63 + ++V IKG KDG+ LDD C F +LL EL KL + + ++ V +K+GNR ++ Sbjct: 5 KQQNVTIKGTKDGITLHLDDCCSFSELLKELDEKLSTHYYDGDGRSLIEVHVKVGNRYLT 64 Query: 64 EEEKEAVLDILKSQGNLLVRSVEA-----LEEPGGKDTDALFMVSGMIRSGQVLHHEGNL 118 E ++E + +++++ NL+V S+E+ E K+ + +S ++RSGQVLH +GNL Sbjct: 65 EVQQEEIRTLIRNKKNLVVDSIESDVITKEEAIAWKEETEIVPISKIVRSGQVLHVKGNL 124 Query: 119 LFLGDVNPGGSITCTGDIYILGALRGMAHAGVGGNQESIIAASLLSPTQLRIADVISRPP 178 L +GDVNPGG++ G+I+++G+LRG+AHAG G+ +++IAAS+++P QLRI+DV R P Sbjct: 125 LLIGDVNPGGTVIAGGNIFVVGSLRGIAHAGYYGDSDAVIAASVMNPMQLRISDVAMRAP 184 Query: 179 DEWGTRESSMEFAYLS-SGAMQIDKIHNIVKLRQGL 213 +E + E AY++ + + +D++ + LR L Sbjct: 185 EEKEDGAEAAECAYINENNHIVVDRLQLLTHLRPNL 220 >ref|NP_390678.1| minC [Bacillus subtilis] sp|Q01463|MINC_BACSU Septum site-determining protein minC pir||F45239 cell-division inhibitor (septum placement) minC - Bacillus subtilis gb|AAA22400.1| MinC protein gb|AAA22608.1| putative emb|CAA78817.1| MinC [Bacillus subtilis] emb|CAB14760.1| minC [Bacillus subtilis subsp. subtilis str. 168] Length = 226 Score = 157 bits (398), Expect = 1e-37, Method: Compositional matrix adjust. Identities = 87/223 (39%), Positives = 140/223 (62%), Gaps = 7/223 (3%) Query: 2 TVQSKHVRIKGIKDGLVFLLDDKCPFEDLLSELRYKLEHSHQNILTGPIVHVDIKLGNRS 61 T + ++V IKG K+GL LDD C F++LL L+ L G + V +KLGNR Sbjct: 3 TKKQQYVTIKGTKNGLTLHLDDACSFDELLDGLQNMLSIEQYTDGKGQKISVHVKLGNRF 62 Query: 62 VSEEEKEAVLDILKSQGNLLVRSVEA-----LEEPGGKDTDALFMVSGMIRSGQVLHHEG 116 + +E++E + +++ S+ +L V S+++ E ++ + VS ++RSGQVL +G Sbjct: 63 LYKEQEEQLTELIASKKDLFVHSIDSEVITKKEAQQIREEAEIISVSKIVRSGQVLQVKG 122 Query: 117 NLLFLGDVNPGGSITCTGDIYILGALRGMAHAGVGGNQESIIAASLLSPTQLRIADVISR 176 +LL +GDVNPGG++ G+I++LG+L+G+AHAG GN +++IAAS + PTQLRI V++R Sbjct: 123 DLLLIGDVNPGGTVRAGGNIFVLGSLKGIAHAGFNGNNQAVIAASEMLPTQLRINHVLNR 182 Query: 177 PPDEWGTRESSMEFAYL-SSGAMQIDKIHNIVKLRQGLNVFKG 218 PD + + ME AYL + G M I+++ ++ LR L +G Sbjct: 183 SPDHI-QKGNEMECAYLDTDGNMVIERLQHLAHLRPDLTRLEG 224 >ref|NP_243894.1| septum site-determining protein [Bacillus halodurans] sp|Q9K8H8|MINC_BACHD Probable septum site-determining protein minC pir||D84028 septum site-determining protein minC [imported] - Bacillus halodurans (strain C-125) dbj|BAB06747.1| septum site-determining protein [Bacillus halodurans] Length = 232 Score = 150 bits (378), Expect = 3e-35, Method: Compositional matrix adjust. Identities = 87/227 (38%), Positives = 134/227 (59%), Gaps = 13/227 (5%) Query: 1 MTVQSKH-VRIKGIKDGLVFLLDDKCPFEDLLSELRYKLEHSHQNILTGPIVHVDIKLGN 59 MT Q K V IKG KDGL F LDD+C F+ ++ EL KL H + P + V + +G Sbjct: 1 MTTQKKQAVTIKGTKDGLTFHLDDRCSFDSIVGELAEKLSSKHYQMEDQPRIQVKVDVGY 60 Query: 60 RSVSEEEKEAVLDILKSQGNLLVRS-----VEALEEPGGKDTDALFMVSGMIRSGQVLHH 114 R ++ E+K + +++ NL V + E + + V+ +IRSGQV Sbjct: 61 RYLTVEQKRHIQELITDGRNLDVEEFVSQVMTKEEAEEKRKEAQIVSVAKVIRSGQVFSV 120 Query: 115 EGNLLFLGDVNPGGSITCTGDIYILGALRGMAHAGVGGNQESIIAASLLSPTQLRIADVI 174 +G+LL +GDVNPGG+I +G+I+++G+LRG+AHAG GN E++IA S ++P QLRI + I Sbjct: 121 DGDLLLIGDVNPGGTIRASGNIFVIGSLRGIAHAGYKGNGEAVIATSHMAPAQLRIGEQI 180 Query: 175 ---SRPPDEWGTRESSMEFAYLSSGA--MQIDKIHNIVKLRQGLNVF 216 S+ + G R ME AY++S +Q+D++ ++K+R L F Sbjct: 181 FHWSKEEQQAGDR--IMECAYIASDTNEIQLDRVQKLLKIRPNLATF 225 >ref|NP_465070.1| similar to cell-division inhibition (septum placement) protein MinC [Listeria monocytogenes EGD-e] sp|Q8Y6Y6|MINC_LISMO Probable septum site-determining protein minC pir||AI1267 cell-division inhibition (septum placement) protein MinC homolog minC [imported] - Listeria monocytogenes (strain EGD-e) emb|CAC99623.1| minC [Listeria monocytogenes] Length = 225 Score = 138 bits (347), Expect = 1e-31, Method: Compositional matrix adjust. Identities = 77/221 (34%), Positives = 126/221 (57%), Gaps = 8/221 (3%) Query: 6 KHVRIKGIKDGLVFLLDDKCPFEDLLSELRYKLEHSHQNILTGPIVHVDIKLGNRSVSEE 65 K+V+IKG KDG+ L DK +L EL L QN +G + V +++GNR SEE Sbjct: 3 KNVQIKGTKDGISIFLSDKASISELQQELTQLLADQKQNPYSGEKLEVQVQIGNRLFSEE 62 Query: 66 EKEAVLDILKSQGNLLVRSVEAL-----EEPGGKDTDALFMVSGMIRSGQVLHHEGNLLF 120 E+ + I+ + + + + E K+ D +F ++ +IRSGQV+ G+ L Sbjct: 63 EELEISTIIHENSQMEISAFYSNVMSKDEAKKWKENDQIFSMATIIRSGQVVQVPGDFLL 122 Query: 121 LGDVNPGGSITCTGDIYILGALRGMAHAGVGGNQESIIAASLLSPTQLRIADVIS--RPP 178 +GDVNPGG I G++++LG ++G+ HAG GN+ +++A L P+Q+RIAD + Sbjct: 123 IGDVNPGGQIRSNGNVFVLGNIKGIIHAGFEGNENAVVAGKFLYPSQVRIADKVYGFDSE 182 Query: 179 DEWGTRESSMEFAYLS-SGAMQIDKIHNIVKLRQGLNVFKG 218 D E+ + A+++ +G + ID IH I K+R ++ F+G Sbjct: 183 DYKEVTETDLFSAFVNDAGEIVIDGIHKIRKIRPEISNFQG 223 Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF Posted date: Mar 24, 2004 1:53 AM Number of letters in database: 757,237,578 Number of sequences in database: 2,715,099 Lambda K H 0.318 0.138 0.392 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 2715099 Number of Hits to DB: 321,321,546 Number of extensions: 13338378 Number of successful extensions: 36511 Number of sequences better than 1.0e-05: 55 Number of HSP's gapped: 36492 Number of HSP's successfully gapped: 55 Length of query: 219 Length of database: 757,237,578 Length adjustment: 121 Effective length of query: 98 Effective length of database: 428,710,599 Effective search space: 42013638702 Effective search space used: 42013638702 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 123 (52.0 bits)