BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0368.0017.p (103 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF 2,715,099 sequences; 757,237,578 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|ZP_00059802.1| COG0261: Ribosomal protein L21 [Clostridium t... 139 2e-32 ref|NP_243877.1| 50S ribosomal protein L21; ribosomal protein L2... 125 3e-28 ref|ZP_00103657.1| COG0261: Ribosomal protein L21 [Desulfitobact... 124 9e-28 ref|NP_782624.1| LSU ribosomal protein L21P [Clostridium tetani ... 122 2e-27 ref|NP_563046.1| 50S ribosomal protein L21 [Clostridium perfring... 117 6e-26 >ref|ZP_00059802.1| COG0261: Ribosomal protein L21 [Clostridium thermocellum ATCC 27405] Length = 106 Score = 139 bits (350), Expect = 2e-32, Method: Compositional matrix adjust. Identities = 68/103 (66%), Positives = 80/103 (77%) Query: 1 MYAIIETGGKQYKVQEGDVLFIEKLDAEDGASVTFDRVLAVSNDGGLTAGTPLVSGASVT 60 MYA+IETGGKQYKVQEGDVLFIEKL E+G++VTFD+V+AVS D ++ GTP VS ASVT Sbjct: 4 MYAVIETGGKQYKVQEGDVLFIEKLANEEGSTVTFDKVVAVSKDDKVSFGTPFVSNASVT 63 Query: 61 AKVEKHGKGQKVVVFXXXXXXXXXXXQGHRQPYTKVTIEKIQA 103 AKV HGKG+K++VF QGHRQPYTK+ IEKI A Sbjct: 64 AKVLCHGKGKKIIVFKYKPKKGYRRKQGHRQPYTKIQIEKINA 106 >ref|NP_243877.1| 50S ribosomal protein L21; ribosomal protein L21 (BL20) [Bacillus halodurans] pir||C84026 ribosomal protein L21 (BL20) rplU [imported] - Bacillus halodurans (strain C-125) dbj|BAB06730.1| 50S ribosomal protein L21 [Bacillus halodurans] Length = 102 Score = 125 bits (314), Expect = 3e-28, Method: Compositional matrix adjust. Identities = 64/103 (62%), Positives = 75/103 (72%), Gaps = 1/103 (0%) Query: 1 MYAIIETGGKQYKVQEGDVLFIEKLDAEDGASVTFDRVLAVSNDGGLTAGTPLVSGASVT 60 MYAIIETGGKQ KV+EG ++IEKLDAE G SV FD+V+ V D + G+P V GASVT Sbjct: 1 MYAIIETGGKQVKVEEGQEIYIEKLDAEAGESVNFDKVVLVGGDD-VKVGSPYVEGASVT 59 Query: 61 AKVEKHGKGQKVVVFXXXXXXXXXXXQGHRQPYTKVTIEKIQA 103 AKVEKHG+G+K++VF QGHRQPYTKV IEKI A Sbjct: 60 AKVEKHGRGKKIIVFKMKAKKNYRRKQGHRQPYTKVVIEKINA 102 >ref|ZP_00103657.1| COG0261: Ribosomal protein L21 [Desulfitobacterium hafniense] Length = 108 Score = 124 bits (310), Expect = 9e-28, Method: Compositional matrix adjust. Identities = 59/103 (57%), Positives = 73/103 (70%) Query: 1 MYAIIETGGKQYKVQEGDVLFIEKLDAEDGASVTFDRVLAVSNDGGLTAGTPLVSGASVT 60 MYA+IETGGKQ++V+EG VLF+EKLDA G +VT D+VL V DG + GTP+V GA Sbjct: 6 MYAVIETGGKQFRVEEGKVLFVEKLDANVGDTVTIDKVLLVEKDGAVKVGTPVVDGAKAL 65 Query: 61 AKVEKHGKGQKVVVFXXXXXXXXXXXQGHRQPYTKVTIEKIQA 103 KV +HGKG+K++VF QGHRQPYTKV +E IQA Sbjct: 66 LKVVEHGKGEKIIVFKMKSKKNYRRKQGHRQPYTKVVVEAIQA 108 >ref|NP_782624.1| LSU ribosomal protein L21P [Clostridium tetani E88] gb|AAO36561.1| LSU ribosomal protein L21P [Clostridium tetani E88] Length = 133 Score = 122 bits (307), Expect = 2e-27, Method: Compositional matrix adjust. Identities = 63/104 (60%), Positives = 72/104 (69%), Gaps = 1/104 (0%) Query: 1 MYAIIETGGKQYKVQEGDVLFIEKLDAEDGASVTFDRVLAVSNDGG-LTAGTPLVSGASV 59 MYA++ TGGKQYKV EGDVLF+EKLDAE A++ D VLA+S D G G P+V GA V Sbjct: 30 MYAVVVTGGKQYKVTEGDVLFVEKLDAEVDAAIELDNVLAISKDNGEFVVGKPVVEGAKV 89 Query: 60 TAKVEKHGKGQKVVVFXXXXXXXXXXXQGHRQPYTKVTIEKIQA 103 TAKV K GK +KVVVF QGHRQPYTK+ IEKI A Sbjct: 90 TAKVLKQGKAKKVVVFKYKPKKHYRKKQGHRQPYTKIQIEKINA 133 >ref|NP_563046.1| 50S ribosomal protein L21 [Clostridium perfringens] dbj|BAB81836.1| 50S ribosomal protein L21 [Clostridium perfringens str. 13] Length = 103 Score = 117 bits (294), Expect = 6e-26, Method: Compositional matrix adjust. Identities = 58/103 (56%), Positives = 71/103 (68%) Query: 1 MYAIIETGGKQYKVQEGDVLFIEKLDAEDGASVTFDRVLAVSNDGGLTAGTPLVSGASVT 60 MYA++ TGGKQY+VQEGDVLF+EKL+AE ++V VLAV+ DG + G P+V GA V Sbjct: 1 MYAVLTTGGKQYRVQEGDVLFVEKLNAEVDSTVELTEVLAVAKDGEIKVGAPVVEGAKVV 60 Query: 61 AKVEKHGKGQKVVVFXXXXXXXXXXXQGHRQPYTKVTIEKIQA 103 AKV GK +KVVVF GHRQPYTK+ IEKI+A Sbjct: 61 AKVLAQGKAKKVVVFKYKRKKDYRRKNGHRQPYTKIVIEKIEA 103 Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF Posted date: Mar 24, 2004 1:53 AM Number of letters in database: 757,237,578 Number of sequences in database: 2,715,099 Lambda K H 0.313 0.133 0.363 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 2715099 Number of Hits to DB: 132,237,379 Number of extensions: 4297485 Number of successful extensions: 9734 Number of sequences better than 1.0e-05: 485 Number of HSP's gapped: 9550 Number of HSP's successfully gapped: 485 Length of query: 103 Length of database: 757,237,578 Length adjustment: 70 Effective length of query: 33 Effective length of database: 567,180,648 Effective search space: 18716961384 Effective search space used: 18716961384 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.2 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 42 (21.9 bits) S2: 120 (50.8 bits)