BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0368.0015.p
         (73 letters)

Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF 
           2,715,099 sequences; 757,237,578 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|NP_622567.1| Ribosomal protein L27 [Thermoanaerobacter tengc...    93   1e-18
ref|NP_390672.1| ribosomal protein L27 (BL24) [Bacillus subtilis...    90   2e-17
ref|NP_243875.1| 50S ribosomal protein L27; ribosomal protein L2...    90   2e-17
ref|ZP_00059800.1| COG0211: Ribosomal protein L27 [Clostridium t...    89   2e-17
ref|ZP_00035836.1| COG0211: Ribosomal protein L27 [Enterococcus ...    89   3e-17

>ref|NP_622567.1| Ribosomal protein L27 [Thermoanaerobacter tengcongensis]
 sp|Q8RBA7|RL27_THETN 50S ribosomal protein L27
 gb|AAM24171.1| Ribosomal protein L27 [Thermoanaerobacter tengcongensis]
          Length = 95

 Score = 93.2 bits (230), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 45/56 (80%), Positives = 49/56 (87%)

Query: 1  VKRADGQAVTGGNILVRQRGTKIHPGTNVGIGKDDTLFALVDGVVKFERWGRDRKK 56
          VKR+DGQ V  GNILVRQRGTKIHPG NVGIGKDDTLFAL+DG V FER GRD+K+
Sbjct: 28 VKRSDGQFVLAGNILVRQRGTKIHPGANVGIGKDDTLFALIDGYVVFERKGRDKKQ 83


>ref|NP_390672.1| ribosomal protein L27 (BL24) [Bacillus subtilis]
 sp|P05657|RL27_BACSU 50S ribosomal protein L27 (BL30) (BL24)
 pir||C21895 ribosomal protein L27 - Bacillus subtilis
 emb|CAA26492.1| homologous to E.coli ribosomal protein  L27 [Bacillus subtilis]
 emb|CAB14754.1| ribosomal protein L27 (BL24) [Bacillus subtilis subsp. subtilis
          str. 168]
          Length = 94

 Score = 89.7 bits (221), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 44/56 (78%), Positives = 48/56 (85%)

Query: 1  VKRADGQAVTGGNILVRQRGTKIHPGTNVGIGKDDTLFALVDGVVKFERWGRDRKK 56
           KRADGQ VTGG+IL RQRGTKI+PG NVG G DDTLFA +DG VKFER+GRDRKK
Sbjct: 31 AKRADGQFVTGGSILYRQRGTKIYPGENVGRGGDDTLFAKIDGTVKFERFGRDRKK 86


>ref|NP_243875.1| 50S ribosomal protein L27; ribosomal protein L27 [Bacillus
          halodurans]
 sp|Q9K8J7|RL27_BACHD 50S ribosomal protein L27
 pir||A84026 ribosomal protein L27 rpmA [imported] - Bacillus halodurans
          (strain C-125)
 dbj|BAB06728.1| 50S ribosomal protein L27 [Bacillus halodurans]
          Length = 94

 Score = 89.7 bits (221), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 45/55 (81%), Positives = 49/55 (89%)

Query: 2  KRADGQAVTGGNILVRQRGTKIHPGTNVGIGKDDTLFALVDGVVKFERWGRDRKK 56
          KRADGQ VTGG+ILVRQRGT+I+PG NVG G DDTLFA VDGVVKFER GRDRK+
Sbjct: 32 KRADGQLVTGGSILVRQRGTRIYPGVNVGKGGDDTLFAKVDGVVKFERVGRDRKQ 86


>ref|ZP_00059800.1| COG0211: Ribosomal protein L27 [Clostridium thermocellum ATCC
          27405]
          Length = 92

 Score = 89.4 bits (220), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 45/56 (80%), Positives = 47/56 (83%)

Query: 1  VKRADGQAVTGGNILVRQRGTKIHPGTNVGIGKDDTLFALVDGVVKFERWGRDRKK 56
          VKR DGQ V  GNILVRQRGTKIHPG NVG GKDDTLFALVDG VKF R G+DRK+
Sbjct: 31 VKRGDGQFVKAGNILVRQRGTKIHPGLNVGKGKDDTLFALVDGRVKFSRLGKDRKQ 86


>ref|ZP_00035836.1| COG0211: Ribosomal protein L27 [Enterococcus faecium]
          Length = 100

 Score = 89.0 bits (219), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 43/56 (76%), Positives = 49/56 (87%)

Query: 1  VKRADGQAVTGGNILVRQRGTKIHPGTNVGIGKDDTLFALVDGVVKFERWGRDRKK 56
           KRADGQ VTGG+IL RQRGTKI+PG NVGIG DDTLFA VDGVV+FER GR++K+
Sbjct: 35 AKRADGQTVTGGSILYRQRGTKIYPGVNVGIGGDDTLFAKVDGVVRFERKGRNKKQ 90


  Database: All non-redundant GenBank CDS
  translations+PDB+SwissProt+PIR+PRF
    Posted date:  Mar 24, 2004  1:53 AM
  Number of letters in database: 757,237,578
  Number of sequences in database:  2,715,099
  
Lambda     K      H
   0.320    0.142    0.427 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 2715099
Number of Hits to DB: 89,553,026
Number of extensions: 2733334
Number of successful extensions: 7136
Number of sequences better than 1.0e-05: 476
Number of HSP's gapped: 7137
Number of HSP's successfully gapped: 476
Length of query: 73
Length of database: 757,237,578
Length adjustment: 44
Effective length of query: 29
Effective length of database: 637,773,222
Effective search space: 18495423438
Effective search space used: 18495423438
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 120 (50.8 bits)