BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0368.0008.p (145 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF 2,715,099 sequences; 757,237,578 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|NP_242080.1| chorismate mutase [Bacillus halodurans] >gi|345... 152 2e-36 ref|NP_390669.1| chorismate mutase [Bacillus subtilis] >gi|13005... 145 3e-34 ref|NP_624137.1| chorismate mutase [Thermoanaerobacter tengconge... 134 9e-31 ref|NP_780831.1| chorismate mutase [Clostridium tetani E88] >gi|... 117 1e-25 ref|NP_347866.1| Chorismate mutase PheB of B.subtilis ortholog [... 107 9e-23 >ref|NP_242080.1| chorismate mutase [Bacillus halodurans] sp|Q9KDJ9|PHEB_BACHD ACT domain protein pheB pir||F83801 chorismate mutase pheB [imported] - Bacillus halodurans (strain C-125) dbj|BAB04933.1| chorismate mutase [Bacillus halodurans] Length = 147 Score = 152 bits (384), Expect = 2e-36, Method: Compositional matrix adjust. Identities = 66/145 (45%), Positives = 111/145 (76%) Query: 1 VKERYYLVREDILPDAVLKTMQVKQLLEAGDAKTVHEGVEQVGLSRSAFYKYKDGIHLIH 60 ++++YLVRED+L +A+ KT++ K LLE+G + ++E V +VGLSRSAFYKYKDG+ H Sbjct: 2 TRKKFYLVREDMLTEAMQKTLEAKALLESGKKRKINEAVHEVGLSRSAFYKYKDGVFPFH 61 Query: 61 QLERERIVTISIDLEHESGMLSKVLGSVAVHGANVLTIHQSIPLQGRANVVISVEISHLN 120 + +E+I+T+SI+LE SG LS +L +VA ANVLTI+Q+IPLQGRAN+ +S++ + ++ Sbjct: 62 TMTKEKIITLSINLEDRSGSLSAMLATVAEAEANVLTINQTIPLQGRANITLSIDTATMS 121 Query: 121 EELGDMLDSLKAIPGVKRALIIGQG 145 E+ ++++ ++++ V++ ++G G Sbjct: 122 LEIDELVEKIESMEAVEKVELVGSG 146 >ref|NP_390669.1| chorismate mutase [Bacillus subtilis] sp|P21204|PHEB_BACSU ACT domain protein pheB pir||D32804 chorismate mutase (EC 5.4.99.5) pheB - Bacillus subtilis gb|AAA22506.1| pheB emb|CAB14751.1| chorismate mutase [Bacillus subtilis subsp. subtilis str. 168] Length = 147 Score = 145 bits (366), Expect = 3e-34, Method: Compositional matrix adjust. Identities = 67/144 (46%), Positives = 105/144 (72%) Query: 2 KERYYLVREDILPDAVLKTMQVKQLLEAGDAKTVHEGVEQVGLSRSAFYKYKDGIHLIHQ 61 +E +YLVRED+LPDA+ KT++VK+LL+ A +V + V++V LSRSAFYKY+D + + Sbjct: 3 EETFYLVREDVLPDAMRKTLEVKKLLDRKKADSVADAVQKVDLSRSAFYKYRDAVFPFYT 62 Query: 62 LERERIVTISIDLEHESGMLSKVLGSVAVHGANVLTIHQSIPLQGRANVVISVEISHLNE 121 + +E+I+T+ LE SG LS++L +VA G+NVL+IHQ+IPLQGRANV +S+ S + E Sbjct: 63 MVKEQIITLFFHLEDRSGALSQLLQAVADSGSNVLSIHQTIPLQGRANVTLSISTSAMEE 122 Query: 122 ELGDMLDSLKAIPGVKRALIIGQG 145 ++ +++ L+ V++ I+G G Sbjct: 123 DIHTLMNKLRKFDFVEKVEILGSG 146 >ref|NP_624137.1| chorismate mutase [Thermoanaerobacter tengcongensis] sp|Q8R708|PHEB_THETN ACT domain protein pheB gb|AAM25741.1| chorismate mutase [Thermoanaerobacter tengcongensis] Length = 146 Score = 134 bits (336), Expect = 9e-31, Method: Compositional matrix adjust. Identities = 63/141 (44%), Positives = 100/141 (70%) Query: 4 RYYLVREDILPDAVLKTMQVKQLLEAGDAKTVHEGVEQVGLSRSAFYKYKDGIHLIHQLE 63 + Y+VRE+IL D++ KT++VK+LLE+G AKT++E V+QVG+SRSAFYKY+D + + Sbjct: 6 KLYIVREEILSDSIKKTIKVKELLESGKAKTINEAVKQVGISRSAFYKYRDYVFPFSKFS 65 Query: 64 RERIVTISIDLEHESGMLSKVLGSVAVHGANVLTIHQSIPLQGRANVVISVEISHLNEEL 123 + +I+T S+ LEH G+LS +L VA NV+TI+QSIP G A+V IS++ ++ + Sbjct: 66 KGKIITFSMVLEHMPGVLSSILDVVAKERGNVVTINQSIPSMGVASVTISIDTQYMEISI 125 Query: 124 GDMLDSLKAIPGVKRALIIGQ 144 D ++ L PGV++ ++G+ Sbjct: 126 EDFIEELSKQPGVRKIEVLGE 146 >ref|NP_780831.1| chorismate mutase [Clostridium tetani E88] sp|Q899Q4|PHEB_CLOTE ACT domain protein pheB gb|AAO34768.1| chorismate mutase [Clostridium tetani E88] Length = 152 Score = 117 bits (292), Expect = 1e-25, Method: Compositional matrix adjust. Identities = 54/136 (39%), Positives = 87/136 (63%) Query: 1 VKERYYLVREDILPDAVLKTMQVKQLLEAGDAKTVHEGVEQVGLSRSAFYKYKDGIHLIH 60 +K++Y ++ +LPD K ++ K+L++AG K + E V+ VG+SRS +YKYKD + + Sbjct: 8 MKDKYLMINTSVLPDVFEKVIEAKELMKAGKIKEITEAVKVVGISRSTYYKYKDYVFNVS 67 Query: 61 QLERERIVTISIDLEHESGMLSKVLGSVAVHGANVLTIHQSIPLQGRANVVISVEISHLN 120 +L + V IS+ L H G LSK+L +A++ N+LTI+Q IP+ ANV I+ +IS LN Sbjct: 68 ELSSNQKVIISVTLNHRPGTLSKILDKIALYKGNILTINQEIPIHNTANVNITFDISQLN 127 Query: 121 EELGDMLDSLKAIPGV 136 E +L+ + A+ V Sbjct: 128 IEFNRLLEEISAMDNV 143 >ref|NP_347866.1| Chorismate mutase PheB of B.subtilis ortholog [Clostridium acetobutylicum] sp|Q97JN9|PHEB_CLOAB ACT domain protein pheB pir||C97052 chorismate mutase PheB of B. subtilis ortholog [imported] - Clostridium acetobutylicum gb|AAK79206.1| Chorismate mutase PheB of B.subtilis ortholog [Clostridium acetobutylicum] Length = 155 Score = 107 bits (267), Expect = 9e-23, Method: Compositional matrix adjust. Identities = 54/141 (38%), Positives = 89/141 (63%) Query: 3 ERYYLVREDILPDAVLKTMQVKQLLEAGDAKTVHEGVEQVGLSRSAFYKYKDGIHLIHQL 62 ++Y L+ +LPD + +QVK+LL + K + E V++VG+SRS +YKYKD + + Sbjct: 13 KKYLLIDTSVLPDVFEEVIQVKELLRSAKVKDITEAVKKVGISRSTYYKYKDYVFNVSDG 72 Query: 63 ERERIVTISIDLEHESGMLSKVLGSVAVHGANVLTIHQSIPLQGRANVVISVEISHLNEE 122 + + VTISI +EH G LS+VL +A N+LTI+Q IP+ ANV I+ +IS ++ + Sbjct: 73 LKSQKVTISILIEHRRGTLSEVLDKLAQRCCNILTINQDIPINNTANVNITFDISGISGD 132 Query: 123 LGDMLDSLKAIPGVKRALIIG 143 + ++++ LK I V + I+ Sbjct: 133 VKNIVEELKKIKNVLKVEIVA 153 Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF Posted date: Mar 24, 2004 1:53 AM Number of letters in database: 757,237,578 Number of sequences in database: 2,715,099 Lambda K H 0.318 0.137 0.370 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 2715099 Number of Hits to DB: 195,739,860 Number of extensions: 6982606 Number of successful extensions: 19442 Number of sequences better than 1.0e-05: 10 Number of HSP's gapped: 19438 Number of HSP's successfully gapped: 10 Length of query: 145 Length of database: 757,237,578 Length adjustment: 105 Effective length of query: 40 Effective length of database: 472,152,183 Effective search space: 18886087320 Effective search space used: 18886087320 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 120 (50.8 bits)