BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0359.0010.p
         (152 letters)

Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF 
           2,715,099 sequences; 757,237,578 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|AAP79638.1| NreA [Staphylococcus carnosus]                         106   1e-22
ref|NP_765526.1| conserved hypothetical protein [Staphylococcus ...   103   1e-21
ref|NP_372917.1| hypothetical protein [Staphylococcus aureus sub...    98   6e-20
ref|NP_785097.1| unknown [Lactobacillus plantarum WCFS1] >gi|282...    97   2e-19

>gb|AAP79638.1| NreA [Staphylococcus carnosus]
          Length = 154

 Score =  106 bits (265), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 52/115 (45%), Positives = 76/115 (66%)

Query: 6   DYQRELDQIRQALGYDFMSLALADPAEYDYVIRWKYASGNSNSRYKRIVLQSGRGIAGIV 65
           DYQ  LD+IR+   +DF ++AL +   +  VI+WKYASGN N RY+ IVL+ G+G+AG+V
Sbjct: 11  DYQDALDEIRETEKFDFAAIALPEDGLHSAVIKWKYASGNINYRYRMIVLRPGKGLAGLV 70

Query: 66  FKTGKPFLLYSVQEQVKQDMLFSYPIINSEKLKSIGAVPLWNDARVAGVLLGGFR 120
            +TG   ++  V  ++ Q+    YPI+ SE L ++ A+PLW + RV G LL G R
Sbjct: 71  IRTGSRKIVEDVDAELSQNDKLGYPIVLSEALTAMVAIPLWKNNRVYGALLLGQR 125


>ref|NP_765526.1| conserved hypothetical protein [Staphylococcus epidermidis ATCC
           12228]
 gb|AAO05612.1| conserved hypothetical protein [Staphylococcus epidermidis ATCC
           12228]
          Length = 150

 Score =  103 bits (257), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 57/141 (40%), Positives = 83/141 (58%), Gaps = 1/141 (0%)

Query: 1   MKNQVDYQRELDQIRQALGYDFMSLALADPAEYDYVIRWKYASGNSNSRYKRIVLQSGRG 60
           +K+    Q  LD++R   GYDF  +AL D       I+W+Y SGN+N RYK I+L+ GRG
Sbjct: 6   LKHNQHLQMNLDKLRAQEGYDFGGIALYDYHHTSSPIKWQYVSGNTNDRYKLIILRKGRG 65

Query: 61  IAGIVFKTGKPFLLYSVQEQVKQDMLFSYPIINSEKLKSIGAVPLWNDARVAGVLLGGFR 120
           +AG+V KTGK  ++  V   +  +    +PII SE L ++ AVPLW +  + GVLL G R
Sbjct: 66  LAGMVMKTGKRMVIADVDTALSPEEKVKFPIILSESLTAVVAVPLWLENSMYGVLLLGQR 125

Query: 121 GDQQVNDTMLRELQNTARLGI 141
             Q +  + L +L    ++GI
Sbjct: 126 NHQPLPQS-LDQLNIEKQIGI 145


>ref|NP_372917.1| hypothetical protein [Staphylococcus aureus subsp. aureus Mu50]
 ref|NP_375504.1| hypothetical protein [Staphylococcus aureus subsp. aureus N315]
 ref|NP_647132.1| hypothetical protein [Staphylococcus aureus subsp. aureus MW2]
 pir||B90040 hypothetical protein [imported] - Staphylococcus aureus  (strain
           N315)
 dbj|BAB43483.1| hypothetical protein [Staphylococcus aureus subsp. aureus N315]
 dbj|BAB58555.1| hypothetical protein [Staphylococcus aureus subsp. aureus Mu50]
 dbj|BAB96180.1| hypothetical protein [Staphylococcus aureus subsp. aureus MW2]
          Length = 150

 Score = 97.8 bits (242), Expect = 6e-20,   Method: Compositional matrix adjust.
 Identities = 50/114 (43%), Positives = 72/114 (63%)

Query: 7   YQRELDQIRQALGYDFMSLALADPAEYDYVIRWKYASGNSNSRYKRIVLQSGRGIAGIVF 66
           +Q  LD+IR+  GYDF ++A  +  +    I+W Y SGN N+R+K I+L+ GRG+AG V 
Sbjct: 12  FQETLDKIRKEEGYDFAAIAFYESNKPSSPIKWHYVSGNKNNRFKLIILRKGRGLAGTVM 71

Query: 67  KTGKPFLLYSVQEQVKQDMLFSYPIINSEKLKSIGAVPLWNDARVAGVLLGGFR 120
           KTGK  ++ +V   +  +    YPI+ SE L ++ AVPLW   +V GVLL G R
Sbjct: 72  KTGKRMVIANVGLALGPEEKIDYPILLSESLTAVLAVPLWYKNQVYGVLLFGQR 125


>ref|NP_785097.1| unknown [Lactobacillus plantarum WCFS1]
 emb|CAD63945.1| unknown [Lactobacillus plantarum WCFS1]
          Length = 145

 Score = 96.7 bits (239), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 53/136 (38%), Positives = 83/136 (61%), Gaps = 6/136 (4%)

Query: 3   NQVDYQRELDQIRQALGYDFMSLAL-ADPAEYDYVIRWKYASGNSNSRYKRIVLQSGRGI 61
           NQ +YQ  +DQ+ Q   +DF+ +AL A+ A +   I W+Y +GN   ++++I+L+SG GI
Sbjct: 8   NQRNYQHLVDQLYQTSDFDFVGVALQANQAPHQ--ITWQYVAGNRGEQFRKIILRSGIGI 65

Query: 62  AGIVFKTGKPFLLYSVQEQVKQDMLFSYPIINSEKLKSIGAVPLWNDA--RVAGVLLGGF 119
           AG+V +TGKPF   ++Q     D+L++ PI  +E L S  A+P+       V GVLL G+
Sbjct: 66  AGLVVRTGKPFWNNALQNATYTDVLYT-PIAQAECLTSAAAIPIVTTEFRLVTGVLLAGY 124

Query: 120 RGDQQVNDTMLRELQN 135
           R  Q V+D  +  L +
Sbjct: 125 RSTQTVSDQTISRLSH 140


  Database: All non-redundant GenBank CDS
  translations+PDB+SwissProt+PIR+PRF
    Posted date:  Mar 24, 2004  1:53 AM
  Number of letters in database: 757,237,578
  Number of sequences in database:  2,715,099
  
Lambda     K      H
   0.320    0.138    0.397 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 2715099
Number of Hits to DB: 223,666,547
Number of extensions: 8521120
Number of successful extensions: 19038
Number of sequences better than 1.0e-05: 4
Number of HSP's gapped: 19043
Number of HSP's successfully gapped: 4
Length of query: 152
Length of database: 757,237,578
Length adjustment: 111
Effective length of query: 41
Effective length of database: 455,861,589
Effective search space: 18690325149
Effective search space used: 18690325149
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 120 (50.8 bits)