BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0358.0005.p (212 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF 2,715,099 sequences; 757,237,578 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|NP_242831.1| transcriptional regulator (TetR/AcrR family) [B... 191 7e-48 ref|NP_976540.1| transcription regulator (TetR/AcrR family) BH19... 133 3e-30 ref|NP_622004.1| Transcriptional regulator [Thermoanaerobacter t... 103 4e-21 ref|ZP_00063861.1| COG1309: Transcriptional regulator [Leuconost... 93 4e-18 ref|NP_391400.1| similar to transcriptional regulator (TetR/AcrR... 86 6e-16 >ref|NP_242831.1| transcriptional regulator (TetR/AcrR family) [Bacillus halodurans] pir||E83895 transcription regulator (TetR/AcrR family) BH1965 [imported] - Bacillus halodurans (strain C-125) dbj|BAB05684.1| transcriptional regulator (TetR/AcrR family) [Bacillus halodurans] Length = 196 Score = 191 bits (486), Expect = 7e-48, Method: Compositional matrix adjust. Identities = 96/191 (50%), Positives = 128/191 (67%), Gaps = 2/191 (1%) Query: 24 LDTKAKLMHAAIDLMAEKGYKGVSTKEIAATAGVSEMTLFRNFGSKKNLLDKAVDHYHYS 83 T KLM AAIDL++E+GY GV+T EIAA AG SE TLFR+FGSK+NLL++A D +HY Sbjct: 6 FGTSEKLMIAAIDLISERGYNGVTTLEIAAAAGFSEKTLFRHFGSKQNLLEQAFDRFHYG 65 Query: 84 IEMTRIFSEKVTWDLRSDLFMISQMYHELMERNRKLYLIVLSDNE-LTEIRERAQKHPRK 142 EM +F EK+ WDL DL MISQ YH +M RNRK+ I + + + L RER +HP++ Sbjct: 66 EEMKGLFKEKLVWDLHEDLLMISQTYHTIMNRNRKMIQIAIKEGKNLPGFRERTHRHPQQ 125 Query: 143 LLELLTNYFIDMQKKSKLVSSDAEMQAITFMWMNYGAFISQLFV-KSEITTKPKEDFMRS 201 L E LT YF +M KK K++ E A++FM +N+GAFI++L K T E+F+ + Sbjct: 126 LKEFLTTYFSEMIKKRKMIDVHPEHTAVSFMLLNFGAFINELDSDKKRFTNVSLEEFITN 185 Query: 202 SVDLFVRALNP 212 SV +F R L P Sbjct: 186 SVRVFTRGLTP 196 >ref|NP_976540.1| transcription regulator (TetR/AcrR family) BH1965 [imported] [Bacillus cereus ATCC 10987] gb|AAS39148.1| transcription regulator (TetR/AcrR family) BH1965 [imported] [Bacillus cereus ATCC 10987] Length = 193 Score = 133 bits (335), Expect = 3e-30, Method: Compositional matrix adjust. Identities = 65/188 (34%), Positives = 113/188 (60%), Gaps = 1/188 (0%) Query: 26 TKAKLMHAAIDLMAEKGYKGVSTKEIAATAGVSEMTLFRNFGSKKNLLDKAVDHYHYSIE 85 T K++ AAI+L+ EKGY +TKEIA AGV+E+T+FRNF SKK +++ AV + Y Sbjct: 6 TAEKIIQAAIELVKEKGYTAATTKEIAMRAGVNEVTIFRNFKSKKGVIEAAVAEFSYVPH 65 Query: 86 MTRIFSEKVTWDLRSDLFMISQMYHELMERNRKLYLIVLSD-NELTEIRERAQKHPRKLL 144 + + ++ W+L +DL +++ YH ++ + + I + + E E+ K P+ L Sbjct: 66 LKKFLQTEIVWELETDLKNLARHYHNFLDGVKDIIAIGIREAGEFPELDGEIAKIPQGLK 125 Query: 145 ELLTNYFIDMQKKSKLVSSDAEMQAITFMWMNYGAFISQLFVKSEITTKPKEDFMRSSVD 204 E L+ YF M++K ++ ++ E Q + F+W+N+G F+S+L +T E F+ +++ Sbjct: 126 EELSIYFAKMREKGNIIDTNIEAQVMNFIWINFGYFLSKLRFADRLTEVDDEKFIENNIV 185 Query: 205 LFVRALNP 212 L+ RAL P Sbjct: 186 LYARALRP 193 >ref|NP_622004.1| Transcriptional regulator [Thermoanaerobacter tengcongensis] gb|AAM23608.1| Transcriptional regulator [Thermoanaerobacter tengcongensis] Length = 194 Score = 103 bits (256), Expect = 4e-21, Method: Compositional matrix adjust. Identities = 56/186 (30%), Positives = 107/186 (57%), Gaps = 1/186 (0%) Query: 26 TKAKLMHAAIDLMAEKGYKGVSTKEIAATAGVSEMTLFRNFGSKKNLLDKAVDHYHYSIE 85 K K++ + + L++EKGY+ +T+ IA AGV+E+T+FR F SKK+++ A+ Sbjct: 5 VKEKIVVSTLKLISEKGYRSTTTRNIAEEAGVNEVTIFRCFRSKKDIVLYALKELELLKP 64 Query: 86 MTRIFSEKVTWDLRSDLFMISQMYHELMERNRKLYLIVLSDNEL-TEIRERAQKHPRKLL 144 M + EK WDL+ DL M+++ YH+ ++ +I L E+ E++E + P+ Sbjct: 65 MDKKILEKCKWDLKEDLLMLAEEYHKNFTEDKAKIMIGLRSPEIFEEVKEYLIRIPKGFK 124 Query: 145 ELLTNYFIDMQKKSKLVSSDAEMQAITFMWMNYGAFISQLFVKSEITTKPKEDFMRSSVD 204 ++L YF M +K L + D E+ A +F+ +N+G + + ++ ++F+R S++ Sbjct: 125 DVLIEYFKIMYQKGMLNNDDFELLAFSFLSLNFGFILMKASYGRKLIGFSNDEFVRRSIE 184 Query: 205 LFVRAL 210 +FV+ + Sbjct: 185 IFVKGI 190 >ref|ZP_00063861.1| COG1309: Transcriptional regulator [Leuconostoc mesenteroides subsp. mesenteroides ATCC 8293] Length = 218 Score = 92.8 bits (229), Expect = 4e-18, Method: Compositional matrix adjust. Identities = 55/188 (29%), Positives = 107/188 (56%), Gaps = 8/188 (4%) Query: 30 LMHAAIDLMAEKGYKGVSTKEIAATAGVSEMTLFRNFGSKKNLLDKAVDHYHYSIEMTRI 89 +++A I L+ E GY+ + +IA A V+ T+FR F K+ LL +D H + ++ I Sbjct: 34 ILNAFITLLIEVGYQSATINKIAEKANVNPSTIFRKFKDKEGLLSAVIDR-HLN-DLAAI 91 Query: 90 FSEK--VTWDLRSDLFMISQMYHELMERNRKLYLIVLSDN-ELTEIRERAQKHPRKLLEL 146 F + VT D+ +DL +S+ Y E E+++++ LI L ++ + ++ ++ P + ++ Sbjct: 92 FDDALVVTGDIETDLINMSRTYQEFQEKHQEVVLIGLQESFRMPKVSHAVEEIPIRFRKI 151 Query: 147 LTNYFIDMQKKSKLVSS-DAEMQAITFMWMNYGAFISQL-FVKSEITTKPKEDFMRSSVD 204 L YF +M+ ++K+ S D E + +W+N+G F++ + + E+ T+P EDF + Sbjct: 152 LLQYFTEMRAQNKIKKSVDVEAAVMNVIWLNFGYFLTAIRYDNPELITEP-EDFYEKQIR 210 Query: 205 LFVRALNP 212 F ++L P Sbjct: 211 FFAKSLRP 218 >ref|NP_391400.1| similar to transcriptional regulator (TetR/AcrR family) [Bacillus subtilis] pir||H70042 transcription regulator TetR/AcrR family homolog yvkB - Bacillus subtilis gb|AAC67267.1| YvkB [Bacillus subtilis] emb|CAB15537.1| yvkB [Bacillus subtilis subsp. subtilis str. 168] Length = 189 Score = 85.9 bits (211), Expect = 6e-16, Method: Compositional matrix adjust. Identities = 53/187 (28%), Positives = 97/187 (51%), Gaps = 4/187 (2%) Query: 26 TKAKLMHAAIDLMAEKGYKGVSTKEIAATAGVSEMTLFRNFGSKKNLLDKAVDHYHYSIE 85 T +++ AA+ L+ +KGY+ +TKEIA A VSE T+FRNF +K+ L++ + +S Sbjct: 4 TNKRILDAAMQLLVKKGYRATTTKEIAEKANVSEATIFRNFKNKQGLVEALLS--QHSSN 61 Query: 86 MTRIFSEKVTWDLRSDLFMISQMYHELMERNRKLYLIVLSDNEL-TEIRERAQKHPRKLL 144 I E+ DL DL I E +E + + I + + ++ ++P+ + Sbjct: 62 RGSIL-EQTEGDLYKDLLHIGTCLLEELEHRKDIIKISFREPAMFQDVINHVTEYPQSMK 120 Query: 145 ELLTNYFIDMQKKSKLVSSDAEMQAITFMWMNYGAFISQLFVKSEITTKPKEDFMRSSVD 204 +LL +Y M +K + + + A FM + +G FI +L + + + P+E + S Sbjct: 121 QLLVDYLKTMGEKGVIQTGNEAEHADVFMSIIFGYFIHRLHLGDRVISMPQEKMLEHSTA 180 Query: 205 LFVRALN 211 LFV+ ++ Sbjct: 181 LFVKGIS 187 Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF Posted date: Mar 24, 2004 1:53 AM Number of letters in database: 757,237,578 Number of sequences in database: 2,715,099 Lambda K H 0.320 0.132 0.365 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 2715099 Number of Hits to DB: 263,281,900 Number of extensions: 9263931 Number of successful extensions: 33867 Number of sequences better than 1.0e-05: 22 Number of HSP's gapped: 33897 Number of HSP's successfully gapped: 22 Length of query: 212 Length of database: 757,237,578 Length adjustment: 120 Effective length of query: 92 Effective length of database: 431,425,698 Effective search space: 39691164216 Effective search space used: 39691164216 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.9 bits) S2: 123 (52.0 bits)