BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0352.0024.p
         (172 letters)

Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF 
           2,715,099 sequences; 757,237,578 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|EAJ31954.1| unknown [environmental sequence]                       122   4e-27
ref|XP_306078.1| ENSANGP00000000192 [Anopheles gambiae] >gi|2129...    79   5e-14
ref|ZP_00188266.1| hypothetical protein Rxyl057001 [Rubrobacter ...    72   4e-12
ref|NP_485182.1| hypothetical protein [Nostoc sp. PCC 7120] >gi|...    66   3e-10
ref|ZP_00162411.1| hypothetical protein Avar021101 [Anabaena var...    65   7e-10

>gb|EAJ31954.1| unknown [environmental sequence]
          Length = 141

 Score =  122 bits (305), Expect = 4e-27,   Method: Compositional matrix adjust.
 Identities = 60/135 (44%), Positives = 90/135 (66%), Gaps = 5/135 (3%)

Query: 12  EELVMYSQMKAFKLKEDIALFTDEGMETELLRIKARNVIDFSATYDVHDSQTGEHLGALR 71
           ++L+ YS+ KA KLKEDI +++DE   TEL+ IKAR++IDF A YD+ DSQ+GE +   +
Sbjct: 2   QQLIGYSKQKALKLKEDIRVYSDEQKSTELICIKARSIIDFGAGYDITDSQSGETICTFK 61

Query: 72  RKGLKSIVKDEWILLDSRDQEIGLIKENSTFMALLRRFIT----LIPQKYNIELRDITIP 127
           R+GLKS+ KD W ++DS   +IG + E+S  +AL+RRF+     LIPQ++ +     +I 
Sbjct: 62  REGLKSLFKDSWKVMDSSGNQIGTLGEDSGILALVRRFVPFASLLIPQEFVLSTGTGSI- 120

Query: 128 AFRQNFNPFVTKIIA 142
            F Q  NP + K + 
Sbjct: 121 VFTQKMNPLIHKNVC 135


>ref|XP_306078.1| ENSANGP00000000192 [Anopheles gambiae]
 gb|EAA02604.1| ENSANGP00000000192 [Anopheles gambiae str. PEST]
          Length = 177

 Score = 79.0 bits (193), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 38/106 (35%), Positives = 64/106 (60%)

Query: 9   NSSEELVMYSQMKAFKLKEDIALFTDEGMETELLRIKARNVIDFSATYDVHDSQTGEHLG 68
           + ++  + Y + K FKLKED+ +F +E    EL RIKA   +DF+A Y + +++TGE LG
Sbjct: 21  DKNDNTIAYVRQKMFKLKEDVVVFNNESKAEELFRIKADRWLDFNANYSISETRTGESLG 80

Query: 69  ALRRKGLKSIVKDEWILLDSRDQEIGLIKENSTFMALLRRFITLIP 114
            + R+G+KSI K  +I +D    E   I+E++ ++ +    I  +P
Sbjct: 81  KIGRRGMKSIWKSTYIGMDKHGSEDYTIREDNGWVKVWDSMIGELP 126


>ref|ZP_00188266.1| hypothetical protein Rxyl057001 [Rubrobacter xylanophilus DSM 9941]
          Length = 196

 Score = 72.4 bits (176), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 34/114 (29%), Positives = 66/114 (57%), Gaps = 1/114 (0%)

Query: 1   MGAKLHIYNSSEELVMYSQMKAFKLKEDIALFTDEGMETELLRIKARNVIDFSATYDVHD 60
           +G ++ + ++   LV Y + K F+++ED+ ++ DE   +EL RIKA    DF A Y++  
Sbjct: 15  IGTRVRVVDAGGRLVAYVRKKKFRIREDVRVYADEDQRSELFRIKADRAWDFGARYEIT- 73

Query: 61  SQTGEHLGALRRKGLKSIVKDEWILLDSRDQEIGLIKENSTFMALLRRFITLIP 114
           +  G  LGA++R+G++S+ K  + + D   + +  I E + ++ +L   +  IP
Sbjct: 74  AADGRRLGAVKRQGMRSMWKSTYDVTDPAGRPVATIHEENPWVKVLDEALEAIP 127


>ref|NP_485182.1| hypothetical protein [Nostoc sp. PCC 7120]
 pir||AH1948 hypothetical protein alr1139 [imported] - Nostoc sp. (strain PCC
           7120)
 dbj|BAB73096.1| ORF_ID:alr1139~hypothetical protein [Nostoc sp. PCC 7120]
          Length = 205

 Score = 66.2 bits (160), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 34/88 (38%), Positives = 52/88 (59%), Gaps = 1/88 (1%)

Query: 1   MGAKLHIYNSSEELVMYSQMKAFKLKEDIALFTDEGMETELLRIKARNVIDFSATYDVHD 60
           +  ++ + ++   LV Y + K FKLKE I +F D      L  IKA  +IDFSA YD  D
Sbjct: 25  LAPQISVADAQGNLVFYVKQKLFKLKEAITIFADVERTRPLYYIKADRIIDFSARYDFTD 84

Query: 61  SQTGEHLGALRRKGLKSIVKDEWILLDS 88
           S  G ++GA++R+GLKS+ +  + + D 
Sbjct: 85  SN-GANIGAVKRRGLKSLWRARYDIFDG 111


>ref|ZP_00162411.1| hypothetical protein Avar021101 [Anabaena variabilis ATCC 29413]
          Length = 205

 Score = 65.1 bits (157), Expect = 7e-10,   Method: Compositional matrix adjust.
 Identities = 34/100 (34%), Positives = 57/100 (57%), Gaps = 1/100 (1%)

Query: 1   MGAKLHIYNSSEELVMYSQMKAFKLKEDIALFTDEGMETELLRIKARNVIDFSATYDVHD 60
           +  ++ + ++   LV Y + K FKLKE I +F D      L  IKA  +IDFSA Y+  D
Sbjct: 25  LAPQISVIDAQGNLVFYVKQKLFKLKEAITIFADVERTRPLYYIKADRIIDFSARYEFTD 84

Query: 61  SQTGEHLGALRRKGLKSIVKDEWILLDSRDQEIGLIKENS 100
           S  G ++GA++R+GLKS+ +  + + D     + + ++N 
Sbjct: 85  SN-GTNIGAVKRRGLKSLWRARYDIFDGDTTTLNIQEKNP 123


  Database: All non-redundant GenBank CDS
  translations+PDB+SwissProt+PIR+PRF
    Posted date:  Mar 24, 2004  1:53 AM
  Number of letters in database: 757,237,578
  Number of sequences in database:  2,715,099
  
Lambda     K      H
   0.321    0.137    0.385 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 2715099
Number of Hits to DB: 205,379,337
Number of extensions: 7322250
Number of successful extensions: 16736
Number of sequences better than 1.0e-05: 6
Number of HSP's gapped: 16733
Number of HSP's successfully gapped: 6
Length of query: 172
Length of database: 757,237,578
Length adjustment: 117
Effective length of query: 55
Effective length of database: 439,570,995
Effective search space: 24176404725
Effective search space used: 24176404725
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 121 (51.2 bits)