BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0352.0023.p (114 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF 2,715,099 sequences; 757,237,578 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gb|AAC62417.1| hypothetical protein [Bacillus firmus] 99 2e-20 ref|NP_830666.1| putative transcriptional regulator [Bacillus ce... 71 7e-12 ref|NP_977276.1| conserved hypothetical protein [Bacillus cereus... 71 9e-12 ref|NP_654803.1| hypothetical protein predicted by GeneMark [Bac... 70 2e-11 ref|NP_692057.1| hypothetical protein OB1136 [Oceanobacillus ihe... 68 6e-11 >gb|AAC62417.1| hypothetical protein [Bacillus firmus] Length = 118 Score = 99.4 bits (246), Expect = 2e-20, Method: Compositional matrix adjust. Identities = 50/113 (44%), Positives = 72/113 (63%) Query: 2 NVIDKAHELARAIKDSSEVADITSAMRVIEADQESKRMLDNFRQSQIELQQRMMNGXXXX 61 NV DKAHEL +AI +S E + + S IEAD+ +K+ML+NFR Q+ELQQ+ M G Sbjct: 3 NVYDKAHELKKAIAESEEFSALKSMHEEIEADEIAKKMLENFRNLQLELQQKQMQGIQIT 62 Query: 62 XXXXXXXXXLFEVLNLNLGIRRLFDAERRLSVVIEDVNKIITDSLSQMYGGAQ 114 FE++ + I +L +AE+RLSV+I D+NKIIT+ L ++YG + Sbjct: 63 EEEAQKAQQQFELVQQHELISKLMEAEQRLSVIIGDINKIITEPLEEIYGNPE 115 >ref|NP_830666.1| putative transcriptional regulator [Bacillus cereus ATCC 14579] gb|AAP07867.1| putative transcriptional regulator [Bacillus cereus ATCC 14579] Length = 118 Score = 71.2 bits (173), Expect = 7e-12, Method: Compositional matrix adjust. Identities = 38/113 (33%), Positives = 60/113 (53%) Query: 2 NVIDKAHELARAIKDSSEVADITSAMRVIEADQESKRMLDNFRQSQIELQQRMMNGXXXX 61 N+ D A+EL +AI ++ + + + ++AD SK + D FR Q+ LQQ+MM G Sbjct: 4 NIHDVAYELQKAIAENEDFKTLKESYAAVQADTASKNLFDEFRTMQLSLQQKMMQGQEIT 63 Query: 62 XXXXXXXXXLFEVLNLNLGIRRLFDAERRLSVVIEDVNKIITDSLSQMYGGAQ 114 + + + I +L + E+RL+VVI DVNKII L ++Y Q Sbjct: 64 EEDNQQAQEVVARIQQDAKITKLMETEQRLNVVIGDVNKIIMKPLEELYSAQQ 116 >ref|NP_977276.1| conserved hypothetical protein [Bacillus cereus ATCC 10987] gb|AAS39884.1| conserved hypothetical protein [Bacillus cereus ATCC 10987] Length = 118 Score = 70.9 bits (172), Expect = 9e-12, Method: Compositional matrix adjust. Identities = 38/113 (33%), Positives = 60/113 (53%) Query: 2 NVIDKAHELARAIKDSSEVADITSAMRVIEADQESKRMLDNFRQSQIELQQRMMNGXXXX 61 N+ D A+EL +AI ++ + + + ++AD SK + D FR Q+ LQQ+MM G Sbjct: 4 NIHDVAYELQKAIAENDDFKTLKESYAAVQADAASKNLFDEFRTMQLSLQQKMMQGQEIT 63 Query: 62 XXXXXXXXXLFEVLNLNLGIRRLFDAERRLSVVIEDVNKIITDSLSQMYGGAQ 114 + + + I +L + E+RL+VVI DVNKII L ++Y Q Sbjct: 64 EEDNQQAQEVVARIQQDAKITKLMETEQRLNVVIGDVNKIIMKPLEELYSAQQ 116 >ref|NP_654803.1| hypothetical protein predicted by GeneMark [Bacillus anthracis A2012] ref|NP_843376.1| conserved hypothetical protein [Bacillus anthracis str. Ames] gb|AAP24862.1| conserved hypothetical protein [Bacillus anthracis str. Ames] Length = 118 Score = 69.7 bits (169), Expect = 2e-11, Method: Compositional matrix adjust. Identities = 38/113 (33%), Positives = 60/113 (53%) Query: 2 NVIDKAHELARAIKDSSEVADITSAMRVIEADQESKRMLDNFRQSQIELQQRMMNGXXXX 61 N+ D A+EL +AI ++ + + + ++AD SK + D FR Q+ LQQ+MM G Sbjct: 4 NIHDVAYELQKAIAENDDFKTLKESYAAVQADAASKNLFDEFRTMQLSLQQKMMQGQEIT 63 Query: 62 XXXXXXXXXLFEVLNLNLGIRRLFDAERRLSVVIEDVNKIITDSLSQMYGGAQ 114 + + + I +L + E+RL+VVI DVNKII L ++Y Q Sbjct: 64 EEDNQQAQEVVVRIQQDAKITKLMETEQRLNVVIGDVNKIIMKPLEELYSAQQ 116 >ref|NP_692057.1| hypothetical protein OB1136 [Oceanobacillus iheyensis HTE831] dbj|BAC13092.1| hypothetical conserved protein [Oceanobacillus iheyensis HTE831] Length = 117 Score = 68.2 bits (165), Expect = 6e-11, Method: Compositional matrix adjust. Identities = 33/113 (29%), Positives = 63/113 (55%) Query: 2 NVIDKAHELARAIKDSSEVADITSAMRVIEADQESKRMLDNFRQSQIELQQRMMNGXXXX 61 N +D A+ L +A+++S E + A + + +K+M +NFR +Q+ LQ++ M G Sbjct: 3 NTLDVANNLEQALRESDEFKSLKEAYEAVMGEPTAKQMFENFRDTQLSLQEKQMQGIEIT 62 Query: 62 XXXXXXXXXLFEVLNLNLGIRRLFDAERRLSVVIEDVNKIITDSLSQMYGGAQ 114 + E + + GI +L + E+RL+ +I ++++IIT L +YG A+ Sbjct: 63 EEEVEKARQVVETVQQHEGISKLMEEEQRLNNLINEISQIITKPLEDLYGTAE 115 Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF Posted date: Mar 24, 2004 1:53 AM Number of letters in database: 757,237,578 Number of sequences in database: 2,715,099 Lambda K H 0.319 0.133 0.341 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 2715099 Number of Hits to DB: 110,367,106 Number of extensions: 2738202 Number of successful extensions: 9620 Number of sequences better than 1.0e-05: 17 Number of HSP's gapped: 9618 Number of HSP's successfully gapped: 17 Length of query: 114 Length of database: 757,237,578 Length adjustment: 79 Effective length of query: 35 Effective length of database: 542,744,757 Effective search space: 18996066495 Effective search space used: 18996066495 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 120 (50.8 bits)