BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0351.0011.p (216 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF 2,715,099 sequences; 757,237,578 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|NP_635547.1| 2-deoxy-D-gluconate 3-dehydrogenase [Xanthomona... 258 4e-68 ref|NP_640525.1| 2-deoxy-D-gluconate 3-dehydrogenase [Xanthomona... 257 1e-67 ref|NP_311726.1| 2-deoxy-D-gluconate 3-dehydrogenase [Escherichi... 254 1e-66 ref|NP_708631.1| 2-deoxy-D-gluconate 3-dehydrogenase [Shigella f... 254 1e-66 ref|NP_289395.1| 2-deoxy-D-gluconate 3-dehydrogenase [Escherichi... 254 1e-66 >ref|NP_635547.1| 2-deoxy-D-gluconate 3-dehydrogenase [Xanthomonas campestris pv. campestris str. ATCC 33913] gb|AAM39471.1| 2-deoxy-D-gluconate 3-dehydrogenase [Xanthomonas campestris pv. campestris str. ATCC 33913] Length = 251 Score = 258 bits (660), Expect = 4e-68, Method: Compositional matrix adjust. Identities = 125/210 (59%), Positives = 156/210 (74%) Query: 7 NASDETVAAAKAFGVKALSIAGDLSDHTKLQGMFDEAVAFTGKVDILVNCAGMIRRTPAK 66 A ET KA G + ++I +L +Q + DE +A G++DILVN AG+IRRT A Sbjct: 42 QAPTETEEKVKAMGRRFVAIEANLISIEPVQRILDETLAGLGRLDILVNNAGLIRRTDAV 101 Query: 67 DHSEKDWFDVINLNLNTVFLLSQIAGRHFLERGNGKIINICSMLSYQGGINVPGYTASKH 126 D SE+DW DV+N+NL + F +SQ AGRHF+ +G+GKIINI SMLS+QGGI VP YTASK Sbjct: 102 DFSEQDWDDVMNVNLKSAFFMSQAAGRHFITQGSGKIINIASMLSFQGGIRVPSYTASKS 161 Query: 127 GVAGLTKAFANEWAGSGLNINAIAPGYMATENTAPIRADQNRADSILDRIPAGRWGTAED 186 G+AG+T+ ANEW G+ NAIAPGYMAT+NTA +RADQ+R SILDRIPA RWG D Sbjct: 162 GIAGITRLLANEWGSKGVTANAIAPGYMATDNTAQLRADQDRNKSILDRIPAARWGVPAD 221 Query: 187 VKGPAVFLASAASDYLNGHILNVDGGWMAR 216 + G AVFLAS+ASDY+NG I+ VDGGW+AR Sbjct: 222 LGGAAVFLASSASDYVNGAIIPVDGGWLAR 251 >ref|NP_640525.1| 2-deoxy-D-gluconate 3-dehydrogenase [Xanthomonas axonopodis pv. citri str. 306] gb|AAM35061.1| 2-deoxy-D-gluconate 3-dehydrogenase [Xanthomonas axonopodis pv. citri str. 306] Length = 251 Score = 257 bits (656), Expect = 1e-67, Method: Compositional matrix adjust. Identities = 124/210 (59%), Positives = 156/210 (74%) Query: 7 NASDETVAAAKAFGVKALSIAGDLSDHTKLQGMFDEAVAFTGKVDILVNCAGMIRRTPAK 66 A ET A KA G + ++I +L +Q + DE +A G +DILVN AG+IRRT A Sbjct: 42 QAPTETEAKVKALGRRFIAIEANLISIEPVQRIIDETIAGLGGLDILVNNAGLIRRTDAV 101 Query: 67 DHSEKDWFDVINLNLNTVFLLSQIAGRHFLERGNGKIINICSMLSYQGGINVPGYTASKH 126 D SE+DW DV+N+NL + F ++Q AGRHF+ +G GKIINI SMLS+QGGI VP YTASK Sbjct: 102 DFSEQDWDDVLNVNLKSAFFMAQAAGRHFIAQGRGKIINIASMLSFQGGIRVPSYTASKS 161 Query: 127 GVAGLTKAFANEWAGSGLNINAIAPGYMATENTAPIRADQNRADSILDRIPAGRWGTAED 186 G+AG+T+ ANEWA G+ NAIAPGYMAT+NTA +RAD++R +ILDRIPA RWG D Sbjct: 162 GIAGITRLLANEWASKGVTTNAIAPGYMATDNTAQLRADEDRNKAILDRIPAARWGVPAD 221 Query: 187 VKGPAVFLASAASDYLNGHILNVDGGWMAR 216 + G AVFLAS+ASDY+NG I+ VDGGW+AR Sbjct: 222 LGGTAVFLASSASDYVNGAIIPVDGGWLAR 251 >ref|NP_311726.1| 2-deoxy-D-gluconate 3-dehydrogenase [Escherichia coli O157:H7] pir||C91091 2-deoxy-D-gluconate 3-dehydrogenase [imported] - Escherichia coli (strain O157:H7, substrain RIMD 0509952) dbj|BAB37122.1| 2-deoxy-D-gluconate 3-dehydrogenase [Escherichia coli O157:H7] Length = 253 Score = 254 bits (648), Expect = 1e-66, Method: Compositional matrix adjust. Identities = 123/207 (59%), Positives = 152/207 (73%), Gaps = 1/207 (0%) Query: 11 ETVAAAKAFGVKALSIAGDLSDHTKLQGMFDEAVAFTGKVDILVNCAGMIRRTPAKDHSE 70 ET+ A G + LS+ DL + G+ D AVA G +DILVN AG+IRR A + SE Sbjct: 47 ETIKQVTALGRRFLSLTADLRKIDGIPGLLDRAVAEFGHIDILVNNAGLIRREDALEFSE 106 Query: 71 KDWFDVINLNLNTVFLLSQIAGRHFLERGNG-KIINICSMLSYQGGINVPGYTASKHGVA 129 KDW DV+NLN+ +VF +SQ A +HF+ +GNG KIINI SMLS+QGGI VP YTASK GV Sbjct: 107 KDWDDVMNLNIKSVFFMSQAAAKHFIAQGNGGKIINIASMLSFQGGIRVPSYTASKSGVM 166 Query: 130 GLTKAFANEWAGSGLNINAIAPGYMATENTAPIRADQNRADSILDRIPAGRWGTAEDVKG 189 G+T+ ANEWA +N+NAIAPGYMAT NT +RAD+ R+ ILDRIPAGRWG D+ G Sbjct: 167 GVTRLMANEWAKHNINVNAIAPGYMATNNTQQLRADEQRSAEILDRIPAGRWGLPSDLMG 226 Query: 190 PAVFLASAASDYLNGHILNVDGGWMAR 216 P VFLAS+ASDY+NG+ + VDGGW+AR Sbjct: 227 PVVFLASSASDYVNGYTIAVDGGWLAR 253 >ref|NP_708631.1| 2-deoxy-D-gluconate 3-dehydrogenase [Shigella flexneri 2a str. 301] ref|NP_838354.1| 2-deoxy-D-gluconate 3-dehydrogenase [Shigella flexneri 2a str. 2457T] gb|AAN44338.1| 2-deoxy-D-gluconate 3-dehydrogenase [Shigella flexneri 2a str. 301] gb|AAP18164.1| 2-deoxy-D-gluconate 3-dehydrogenase [Shigella flexneri 2a str. 2457T] Length = 253 Score = 254 bits (648), Expect = 1e-66, Method: Compositional matrix adjust. Identities = 123/207 (59%), Positives = 152/207 (73%), Gaps = 1/207 (0%) Query: 11 ETVAAAKAFGVKALSIAGDLSDHTKLQGMFDEAVAFTGKVDILVNCAGMIRRTPAKDHSE 70 ET+ A G + LS+ DL + G+ D AVA G +DILVN AG+IRR A + SE Sbjct: 47 ETIEQVTALGRRFLSLTADLRKIDGIPGLLDRAVAEFGHIDILVNNAGLIRREDALEFSE 106 Query: 71 KDWFDVINLNLNTVFLLSQIAGRHFLERGNG-KIINICSMLSYQGGINVPGYTASKHGVA 129 KDW DV+NLN+ +VF +SQ A +HF+ +GNG KIINI SMLS+QGGI VP YTASK GV Sbjct: 107 KDWDDVMNLNIKSVFFMSQAAAKHFIAQGNGGKIINIASMLSFQGGIRVPSYTASKSGVM 166 Query: 130 GLTKAFANEWAGSGLNINAIAPGYMATENTAPIRADQNRADSILDRIPAGRWGTAEDVKG 189 G+T+ ANEWA +N+NAIAPGYMAT NT +RAD+ R+ ILDRIPAGRWG D+ G Sbjct: 167 GVTRLMANEWAKHNINVNAIAPGYMATNNTQQLRADEQRSAEILDRIPAGRWGLPSDLMG 226 Query: 190 PAVFLASAASDYLNGHILNVDGGWMAR 216 P VFLAS+ASDY+NG+ + VDGGW+AR Sbjct: 227 PVVFLASSASDYVNGYTIAVDGGWLAR 253 >ref|NP_289395.1| 2-deoxy-D-gluconate 3-dehydrogenase [Escherichia coli O157:H7 EDL933] pir||F85936 2-deoxy-D-gluconate 3-dehydrogenase [imported] - Escherichia coli (strain O157:H7, substrain EDL933) gb|AAG57954.1| 2-deoxy-D-gluconate 3-dehydrogenase [Escherichia coli O157:H7 EDL933] Length = 253 Score = 254 bits (648), Expect = 1e-66, Method: Compositional matrix adjust. Identities = 123/207 (59%), Positives = 152/207 (73%), Gaps = 1/207 (0%) Query: 11 ETVAAAKAFGVKALSIAGDLSDHTKLQGMFDEAVAFTGKVDILVNCAGMIRRTPAKDHSE 70 ET+ A G + LS+ DL + G+ D AVA G +DILVN AG+IRR A + SE Sbjct: 47 ETIKQVTALGRRFLSLTADLRKIDGIPGLLDRAVAEFGHIDILVNNAGLIRREBALEFSE 106 Query: 71 KDWFDVINLNLNTVFLLSQIAGRHFLERGNG-KIINICSMLSYQGGINVPGYTASKHGVA 129 KDW DV+NLN+ +VF +SQ A +HF+ +GNG KIINI SMLS+QGGI VP YTASK GV Sbjct: 107 KDWDDVMNLNIKSVFFMSQAAAKHFIAQGNGGKIINIASMLSFQGGIRVPSYTASKSGVM 166 Query: 130 GLTKAFANEWAGSGLNINAIAPGYMATENTAPIRADQNRADSILDRIPAGRWGTAEDVKG 189 G+T+ ANEWA +N+NAIAPGYMAT NT +RAD+ R+ ILDRIPAGRWG D+ G Sbjct: 167 GVTRLMANEWAKHNINVNAIAPGYMATNNTQQLRADEQRSAEILDRIPAGRWGLPSDLMG 226 Query: 190 PAVFLASAASDYLNGHILNVDGGWMAR 216 P VFLAS+ASDY+NG+ + VDGGW+AR Sbjct: 227 PVVFLASSASDYVNGYTIAVDGGWLAR 253 Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF Posted date: Mar 24, 2004 1:53 AM Number of letters in database: 757,237,578 Number of sequences in database: 2,715,099 Lambda K H 0.318 0.133 0.397 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 2715099 Number of Hits to DB: 318,173,128 Number of extensions: 12911740 Number of successful extensions: 52950 Number of sequences better than 1.0e-05: 6459 Number of HSP's gapped: 47401 Number of HSP's successfully gapped: 6477 Length of query: 216 Length of database: 757,237,578 Length adjustment: 121 Effective length of query: 95 Effective length of database: 428,710,599 Effective search space: 40727506905 Effective search space used: 40727506905 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 123 (52.0 bits)