BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0351.0009.p (255 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF 2,715,099 sequences; 757,237,578 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|NP_622090.1| ABC-type multidrug transport system, ATPase com... 156 4e-37 ref|NP_388157.1| Na+ ABC transporter (ATP-binding protein) [Baci... 154 1e-36 ref|ZP_00061996.1| COG4555: ABC-type Na+ transport system, ATPas... 151 2e-35 ref|ZP_00043839.1| COG1131: ABC-type multidrug transport system,... 149 9e-35 ref|NP_633081.1| ABC transporter, ATP-binding protein [Methanosa... 148 1e-34 >ref|NP_622090.1| ABC-type multidrug transport system, ATPase component [Thermoanaerobacter tengcongensis] gb|AAM23694.1| ABC-type multidrug transport system, ATPase component [Thermoanaerobacter tengcongensis] Length = 253 Score = 156 bits (395), Expect = 4e-37, Method: Compositional matrix adjust. Identities = 82/223 (36%), Positives = 136/223 (60%), Gaps = 7/223 (3%) Query: 27 LNLTISEGEIYALLGHNGAGKXXXXXXXXXXXEPDDGTVTVFGSHPIKDGSTVRGMCGVL 86 L+ + EGEIY LLG NGAGK +P +GT + G IK+ +R G+L Sbjct: 30 LSFRVEEGEIYGLLGENGAGKTTTLRMLATMLKPTNGTAIINGRDLIKEPEEIRKEVGIL 89 Query: 87 -SEDVGLYESMTVLDNLMYYADIYGMSRAESDGRIDELLRTFAMQDKKRALVKGLSTGMS 145 + GLY+ +T +N++Y+A+++ M + E++ +ID L R F M + L LS GM Sbjct: 90 FGGESGLYDRLTARENILYFAELHDMDKKEANKKIDILARKFDMMEFIDRLAAKLSKGMK 149 Query: 146 KKTALIRAMLHNPRILILDEPTNGLDPVSTADLRAMLLRLAKEQGTTIIMTTHNLEEVQK 205 +K A++R+++H+P++++ DEPT+GLD S ++ +R KE+G TII ++H++ EV+K Sbjct: 150 QKVAILRSIIHDPKVMLFDEPTSGLDVGSVREVHD-FIRFCKEEGKTIIFSSHSMSEVEK 208 Query: 206 ICDKITVLRHGQNIFTGLIAALEDSGHYMERGQFSLEKLYMEL 248 +CDKI ++ G+ I G I L++ + +LE+L+MEL Sbjct: 209 LCDKIGIIHKGKLIEEGTIEGLKE-----KYKTDNLEELFMEL 246 >ref|NP_388157.1| Na+ ABC transporter (ATP-binding protein) [Bacillus subtilis] sp|P46903|NATA_BACSU ATP-binding transport protein natA (Na(+) ABC transporter) pir||A69666 Na+ ABC transporter (extrusion) (ATP-binding protein) natA - Bacillus subtilis gb|AAB53022.1| NatA [Bacillus subtilis] dbj|BAA22236.1| NatA [Bacillus subtilis] emb|CAB12069.1| Na+ ABC transporter (ATP-binding protein) [Bacillus subtilis subsp. subtilis str. 168] Length = 246 Score = 154 bits (390), Expect = 1e-36, Method: Compositional matrix adjust. Identities = 79/205 (38%), Positives = 123/205 (60%), Gaps = 2/205 (0%) Query: 27 LNLTISEGEIYALLGHNGAGKXXXXXXXXXXXEPDDGTVTVFGSHPIKDGSTVRGMCGVL 86 ++LTI +GE+ +LG NGAGK EP G +TV G +K + V+ GVL Sbjct: 24 VSLTIEKGEVVGILGENGAGKTTMLRMIASLLEPSQGVITVDGFDTVKQPAEVKQRIGVL 83 Query: 87 -SEDVGLYESMTVLDNLMYYADIYGMSRAESDGRIDELLRTFAMQDKKRALVKGLSTGMS 145 + GLY+ MT +NL Y+ +YG++R E RI++L + F M+D V G S GM Sbjct: 84 FGGETGLYDRMTAKENLQYFGRLYGLNRHEIKARIEDLSKRFGMRDYMNRRVGGFSKGMR 143 Query: 146 KKTALIRAMLHNPRILILDEPTNGLDPVSTADLRAMLLRLAKEQGTTIIMTTHNLEEVQK 205 +K A+ RA++H+P I++ DEPT GLD S+ R + +L +EQ TI+ ++H +EEVQ Sbjct: 144 QKVAIARALIHDPDIILFDEPTTGLDITSSNIFREFIQQLKREQ-KTILFSSHIMEEVQA 202 Query: 206 ICDKITVLRHGQNIFTGLIAALEDS 230 +CD + ++ G+ I+ G + +L +S Sbjct: 203 LCDSVIMIHSGEVIYRGALESLYES 227 >ref|ZP_00061996.1| COG4555: ABC-type Na+ transport system, ATPase component [Clostridium thermocellum ATCC 27405] Length = 251 Score = 151 bits (381), Expect = 2e-35, Method: Compositional matrix adjust. Identities = 77/224 (34%), Positives = 134/224 (59%), Gaps = 7/224 (3%) Query: 26 GLNLTISEGEIYALLGHNGAGKXXXXXXXXXXXEPDDGTVTVFGSHPIKDGSTVRGMCGV 85 G++ + EGE++ LLG NGAGK +P GT T+ G +K+ VR G+ Sbjct: 19 GISFEVKEGEVFGLLGENGAGKTTTLRMLATMLKPTSGTATMAGWDIVKEPEKVRSSIGI 78 Query: 86 L-SEDVGLYESMTVLDNLMYYADIYGMSRAESDGRIDELLRTFAMQDKKRALVKGLSTGM 144 L + GLY+ +T +N+ Y+ ++ MS+ + RI EL + F M++ + LS GM Sbjct: 79 LFGGETGLYDRLTCEENIAYFGELNDMSKTQIKERIKELAKVFNMEEYLKRRAGKLSKGM 138 Query: 145 SKKTALIRAMLHNPRILILDEPTNGLDPVSTADLRAMLLRLAKEQGTTIIMTTHNLEEVQ 204 +K A RA++H+P+I++LDEPT+GLD +T D+ ++ K+QG T+I ++H++ EV+ Sbjct: 139 KQKVAFARAIVHDPKIMLLDEPTSGLDVSATRDVHEFIV-TCKKQGKTVIFSSHSMSEVE 197 Query: 205 KICDKITVLRHGQNIFTGLIAALEDSGHYMERGQFSLEKLYMEL 248 K+CD++ ++ G+ + G + ++ S H G+ LE +++EL Sbjct: 198 KLCDRVAIIHKGRLVEVGTLDEIK-SRH----GKNDLENIFIEL 236 >ref|ZP_00043839.1| COG1131: ABC-type multidrug transport system, ATPase component [Magnetococcus sp. MC-1] Length = 339 Score = 149 bits (375), Expect = 9e-35, Method: Compositional matrix adjust. Identities = 75/204 (36%), Positives = 120/204 (58%), Gaps = 2/204 (0%) Query: 28 NLTISEGEIYALLGHNGAGKXXXXXXXXXXXEPDDGTVTVFGSHPIKDGSTVRGMCGVLS 87 + I GE+ LLGHNGAGK EP GT+ + G ++ +TV+G G L Sbjct: 50 SFAIQRGEVVGLLGHNGAGKTTIMKMLTGFLEPTSGTILIDGLALNREANTVQGRIGYLP 109 Query: 88 EDVGLYESMTVLDNLMYYADIYGMSRAESDGRIDELLRTFAMQDKKRALVKGLSTGMSKK 147 E+ ++ MTV+ L Y+AD+ G++ + I +R A+Q+K A + LS G ++ Sbjct: 110 ENCPVWPEMTVMAYLEYHADLRGIADIDKPRAIARAIRRTALQEKALAPIATLSRGYRQR 169 Query: 148 TALIRAMLHNPRILILDEPTNGLDPVSTADLRAMLLRLAKEQGTTIIMTTHNLEEVQKIC 207 + +A+LH+P I+ILDEPTNGLDP +R ++ LAKE T+I++TH L+EVQ +C Sbjct: 170 VGVAQAILHDPDIIILDEPTNGLDPTQIRQMRDLIRELAKE--ATVILSTHILQEVQAVC 227 Query: 208 DKITVLRHGQNIFTGLIAALEDSG 231 +++ +L+ G+ + +A L+ G Sbjct: 228 ERVLILKQGKLVVDATLATLQSGG 251 >ref|NP_633081.1| ABC transporter, ATP-binding protein [Methanosarcina mazei Goe1] gb|AAM30753.1| ABC transporter, ATP-binding protein [Methanosarcina mazei Goe1] Length = 303 Score = 148 bits (373), Expect = 1e-34, Method: Compositional matrix adjust. Identities = 75/227 (33%), Positives = 129/227 (56%), Gaps = 9/227 (3%) Query: 1 MGDIRFEGISKSFXXXXXXXXXXXXGLNLTISEGEIYALLGHNGAGKXXXXXXXXXXXEP 60 M + F+G+SKSF ++ ++ +GEI+ LLG NGAGK +P Sbjct: 1 MHALEFKGVSKSFAEKNVIR-----DISFSVEKGEIFGLLGPNGAGKTTLIRLLLDIIKP 55 Query: 61 DDGTVTVFGSHPIKDGSTVRGMCGVLSEDVGLYESMTVLDNLMYYADIYGMSRAESDGRI 120 D G + VFGS G + G L E+ GLY+ +LD L+Y A + + + E+ Sbjct: 56 DSGEIHVFGSSLTTAG---KDRIGYLPEERGLYKKTKILDMLVYLARLKNVPKKEAQANA 112 Query: 121 DELLRTFAMQDKKRALVKGLSTGMSKKTALIRAMLHNPRILILDEPTNGLDPVSTADLRA 180 +ELL++ + + + ++ LS GM +K + +++H+P ++ILDEP +GLDPVST +++ Sbjct: 113 EELLKSLELYEHREKRIEELSKGMQQKIQFLSSIIHDPELIILDEPFSGLDPVSTKTIKS 172 Query: 181 MLLRLAKEQGTTIIMTTHNLEEVQKICDKITVLRHGQNIFTGLIAAL 227 + ++ G T+I++TH +E+ QK+CD+I +L GQ + G + + Sbjct: 173 KITEY-RDAGRTVILSTHMMEQAQKLCDRILMLNKGQQVLYGTVEVI 218 Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF Posted date: Mar 24, 2004 1:53 AM Number of letters in database: 757,237,578 Number of sequences in database: 2,715,099 Lambda K H 0.318 0.137 0.385 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 2715099 Number of Hits to DB: 322,428,686 Number of extensions: 11901964 Number of successful extensions: 86353 Number of sequences better than 1.0e-05: 17265 Number of HSP's gapped: 71164 Number of HSP's successfully gapped: 18250 Length of query: 255 Length of database: 757,237,578 Length adjustment: 123 Effective length of query: 132 Effective length of database: 423,280,401 Effective search space: 55873012932 Effective search space used: 55873012932 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 124 (52.4 bits)