BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0350.0066.p (185 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF 2,715,099 sequences; 757,237,578 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|NP_243665.1| translation elongation factor EF-P [Bacillus ha... 276 1e-73 ref|NP_692816.1| translation elongation factor EF-P [Oceanobacil... 274 7e-73 ref|NP_980563.1| translation elongation factor P [Bacillus cereu... 270 8e-72 ref|NP_658234.1| EFP, Elongation factor P (EF-P) [Bacillus anthr... 270 1e-71 ref|NP_833911.1| Protein Translation Elongation Factor P (EF-P) ... 270 1e-71 >ref|NP_243665.1| translation elongation factor EF-P [Bacillus halodurans] sp|Q9K951|EFP_BACHD Elongation factor P (EF-P) pir||G83999 translation elongation factor EF-P efp [imported] - Bacillus halodurans (strain C-125) dbj|BAB06518.1| translation elongation factor EF-P [Bacillus halodurans] Length = 185 Score = 276 bits (707), Expect = 1e-73, Method: Compositional matrix adjust. Identities = 130/185 (70%), Positives = 154/185 (83%) Query: 1 VISVNDFKTGLTVEVDGDIFTVLDFQHVKPGKGAAFVRSKLKNLRNGNTVERTFRAGETI 60 +ISVNDFKTGLT+EVD I+ V++FQHVKPGKGAAFVRSKL+NLR G E+TFRAGE + Sbjct: 1 MISVNDFKTGLTIEVDNGIWQVMEFQHVKPGKGAAFVRSKLRNLRTGAVQEKTFRAGEKV 60 Query: 61 GRAIIENRGVQYLYASGSDHVFMDNETYDQFELSAKQLEWELNFLKENMTVNIVSYQGEI 120 +A IENR +QYLYASG H FMDNET++Q ELS Q+E EL FLKENM V+++SYQGE Sbjct: 61 SKAHIENRRMQYLYASGDVHTFMDNETFEQLELSTAQIEHELKFLKENMEVHVISYQGET 120 Query: 121 LGINLPTSVELKVTETEPGVKGNTAQGATKAATLETGLTVQVPLFINENDVLLIDTREGK 180 LG+ +P +VEL VTETEPG+KG+TA G TK ATLETGLTVQVP F+NE DVL+IDTR G Sbjct: 121 LGVEVPNTVELTVTETEPGIKGDTASGGTKPATLETGLTVQVPFFVNEGDVLVIDTRSGD 180 Query: 181 YISRA 185 Y+SRA Sbjct: 181 YVSRA 185 >ref|NP_692816.1| translation elongation factor EF-P [Oceanobacillus iheyensis HTE831] sp|Q8EQ28|EFP_OCEIH Elongation factor P (EF-P) dbj|BAC13851.1| translation elongation factor EF-P [Oceanobacillus iheyensis HTE831] Length = 185 Score = 274 bits (701), Expect = 7e-73, Method: Compositional matrix adjust. Identities = 129/185 (69%), Positives = 156/185 (84%) Query: 1 VISVNDFKTGLTVEVDGDIFTVLDFQHVKPGKGAAFVRSKLKNLRNGNTVERTFRAGETI 60 +ISVNDFKTGLTVEVD DI+ V++FQHVKPGKGAAFVRSKL+NLR+GN E+TFRAGE + Sbjct: 1 MISVNDFKTGLTVEVDNDIWQVIEFQHVKPGKGAAFVRSKLRNLRSGNIQEKTFRAGEKV 60 Query: 61 GRAIIENRGVQYLYASGSDHVFMDNETYDQFELSAKQLEWELNFLKENMTVNIVSYQGEI 120 +A IENR +QYLYASG H FMD TYDQ E+ KQ++ +L F+KENM V+IVSY+ EI Sbjct: 61 SKAHIENRKMQYLYASGDAHAFMDTNTYDQIEIQGKQIQEQLKFIKENMEVSIVSYENEI 120 Query: 121 LGINLPTSVELKVTETEPGVKGNTAQGATKAATLETGLTVQVPLFINENDVLLIDTREGK 180 LG++LP +VEL VTETEPG+KG+TA G +K ATLETGL VQVP FINE DVL+I+T +GK Sbjct: 121 LGVDLPNNVELTVTETEPGIKGDTASGGSKPATLETGLIVQVPFFINEGDVLVINTSDGK 180 Query: 181 YISRA 185 Y+SRA Sbjct: 181 YVSRA 185 >ref|NP_980563.1| translation elongation factor P [Bacillus cereus ATCC 10987] gb|AAS43171.1| translation elongation factor P [Bacillus cereus ATCC 10987] Length = 185 Score = 270 bits (691), Expect = 8e-72, Method: Compositional matrix adjust. Identities = 128/185 (69%), Positives = 155/185 (83%) Query: 1 VISVNDFKTGLTVEVDGDIFTVLDFQHVKPGKGAAFVRSKLKNLRNGNTVERTFRAGETI 60 +ISVNDF+TGLT+ VD ++ VLDFQHVKPGKGAAFVRSKL+NLR G+ E+TFRAGE + Sbjct: 1 MISVNDFRTGLTIAVDNGLWQVLDFQHVKPGKGAAFVRSKLRNLRTGSVQEKTFRAGEKV 60 Query: 61 GRAIIENRGVQYLYASGSDHVFMDNETYDQFELSAKQLEWELNFLKENMTVNIVSYQGEI 120 +A IENR +QYLYASG HVFMDN TY+Q EL KQ+E EL FLKENM V+I++YQGE+ Sbjct: 61 EKAHIENRRMQYLYASGESHVFMDNGTYEQIELGEKQIERELKFLKENMEVSIMTYQGEV 120 Query: 121 LGINLPTSVELKVTETEPGVKGNTAQGATKAATLETGLTVQVPLFINENDVLLIDTREGK 180 LG+ LP +VEL+VTETEPG+KG+TA TK ATLETGL VQVP+FINE + L+I+T EGK Sbjct: 121 LGVELPNTVELQVTETEPGIKGDTASNVTKPATLETGLVVQVPIFINEGETLIINTGEGK 180 Query: 181 YISRA 185 Y+SRA Sbjct: 181 YVSRA 185 >ref|NP_658234.1| EFP, Elongation factor P (EF-P) [Bacillus anthracis A2012] ref|NP_846649.1| translation elongation factor P [Bacillus anthracis str. Ames] gb|AAP28135.1| translation elongation factor P [Bacillus anthracis str. Ames] Length = 185 Score = 270 bits (690), Expect = 1e-71, Method: Compositional matrix adjust. Identities = 128/185 (69%), Positives = 156/185 (84%) Query: 1 VISVNDFKTGLTVEVDGDIFTVLDFQHVKPGKGAAFVRSKLKNLRNGNTVERTFRAGETI 60 +ISVNDF+TGLT+ VD ++ VLDFQHVKPGKGAAFVRSKL+NLR G+ E+TFRAGE + Sbjct: 1 MISVNDFRTGLTIAVDNGLWQVLDFQHVKPGKGAAFVRSKLRNLRTGSVQEKTFRAGEKV 60 Query: 61 GRAIIENRGVQYLYASGSDHVFMDNETYDQFELSAKQLEWELNFLKENMTVNIVSYQGEI 120 +A IENR +QYLYASG HVFMDN TY+Q EL KQ+E EL FLKENM V+I++YQGE+ Sbjct: 61 EKAHIENRRMQYLYASGEAHVFMDNGTYEQIELGEKQIERELKFLKENMEVSIMTYQGEV 120 Query: 121 LGINLPTSVELKVTETEPGVKGNTAQGATKAATLETGLTVQVPLFINENDVLLIDTREGK 180 LG+ LP +VEL+VTETEPG+KG+TA TK ATLETGL VQVP+FINE ++L+I+T EGK Sbjct: 121 LGVELPNTVELQVTETEPGIKGDTASNVTKPATLETGLVVQVPIFINEGEMLIINTGEGK 180 Query: 181 YISRA 185 Y+SRA Sbjct: 181 YVSRA 185 >ref|NP_833911.1| Protein Translation Elongation Factor P (EF-P) [Bacillus cereus ATCC 14579] gb|AAP11112.1| Protein Translation Elongation Factor P (EF-P) [Bacillus cereus ATCC 14579] Length = 185 Score = 270 bits (689), Expect = 1e-71, Method: Compositional matrix adjust. Identities = 128/185 (69%), Positives = 155/185 (83%) Query: 1 VISVNDFKTGLTVEVDGDIFTVLDFQHVKPGKGAAFVRSKLKNLRNGNTVERTFRAGETI 60 +ISVNDF+TGLT+ VD ++ VLDFQHVKPGKGAAFVRSKL+NLR G+ E+TFRAGE + Sbjct: 1 MISVNDFRTGLTISVDNALWQVLDFQHVKPGKGAAFVRSKLRNLRTGSVQEKTFRAGEKV 60 Query: 61 GRAIIENRGVQYLYASGSDHVFMDNETYDQFELSAKQLEWELNFLKENMTVNIVSYQGEI 120 +A IENR +QYLYASG HVFMDN TY+Q EL KQ+E EL FLKENM V I++YQGE+ Sbjct: 61 EKAHIENRRMQYLYASGEAHVFMDNGTYEQIELGEKQIERELKFLKENMEVAIMTYQGEV 120 Query: 121 LGINLPTSVELKVTETEPGVKGNTAQGATKAATLETGLTVQVPLFINENDVLLIDTREGK 180 LG+ LP +VEL+VTETEPG+KG+TA TK ATLETGL VQVP+FINE ++L+I+T EGK Sbjct: 121 LGVELPNTVELQVTETEPGIKGDTASNVTKPATLETGLVVQVPIFINEGEMLIINTGEGK 180 Query: 181 YISRA 185 Y+SRA Sbjct: 181 YVSRA 185 Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF Posted date: Mar 24, 2004 1:53 AM Number of letters in database: 757,237,578 Number of sequences in database: 2,715,099 Lambda K H 0.315 0.134 0.372 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 2715099 Number of Hits to DB: 263,276,782 Number of extensions: 10427973 Number of successful extensions: 20996 Number of sequences better than 1.0e-05: 722 Number of HSP's gapped: 20841 Number of HSP's successfully gapped: 722 Length of query: 185 Length of database: 757,237,578 Length adjustment: 118 Effective length of query: 67 Effective length of database: 436,855,896 Effective search space: 29269345032 Effective search space used: 29269345032 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 42 (22.0 bits) S2: 122 (51.6 bits)