BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0350.0063.p (315 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF 2,715,099 sequences; 757,237,578 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|NP_243669.1| BH2803~unknown conserved protein [Bacillus halo... 326 4e-88 ref|NP_390329.1| yqhQ [Bacillus subtilis] >gi|1731046|sp|P54515|... 301 1e-80 ref|NP_833915.1| hypothetical Membrane Spanning Protein [Bacillu... 298 1e-79 ref|NP_658238.1| hypothetical protein predicted by GeneMark [Bac... 296 4e-79 ref|NP_464878.1| similar to B. subtilis YqhQ protein [Listeria m... 294 2e-78 >ref|NP_243669.1| BH2803~unknown conserved protein [Bacillus halodurans] pir||C84000 hypothetical protein BH2803 [imported] - Bacillus halodurans (strain C-125) dbj|BAB06522.1| BH2803~unknown conserved protein [Bacillus halodurans] Length = 325 Score = 326 bits (836), Expect = 4e-88, Method: Compositional matrix adjust. Identities = 160/304 (52%), Positives = 215/304 (70%), Gaps = 8/304 (2%) Query: 1 MFGGKHINVTAVRRKNGEITFLEVPRSDKSWVVKLRRIPLLRGLVSIIDSSAKGSKHLNY 60 MFGGKH +T +RR +G +LEV + K W+ L++IP +RG+V I+++S+ G+KHLN+ Sbjct: 19 MFGGKHTTLTTIRRIDGSYDYLEVKKETKPWIQSLKKIPFIRGVVGILEASSYGTKHLNF 78 Query: 61 SAESYAEDETEPEDXXXXXXXXXXXXXGWSLGMIFGVAIMGILSFLVGKLIFTLVPVFVE 120 S + Y D E + L MIFGVA +GILSFL GK IFTLVPVF+ Sbjct: 79 STDRYEVDPKEDDQIVPEEKKS-------KLAMIFGVAAIGILSFLFGKFIFTLVPVFLA 131 Query: 121 NFLFKNAFDNYILHNLVEGGIKLVLLLVYLWAISQTPVVKRLFQYHGAEHKVISAFEAGE 180 L F ++ NL+EG KL+LLL Y++AIS TP+++++FQYHGAEHKVI+A+E G Sbjct: 132 ETL-SFLFPGHVAQNLLEGLFKLILLLTYIYAISFTPLIRKVFQYHGAEHKVINAYERGL 190 Query: 181 ELTVANVQKYSRLHYRCGSSFMMLTIILGVIIYSVFPWDNLVERVVQRIVLLPVVIGISF 240 LTV NVQ+ SRLHYRCGSSF++ T+I+GV +Y + P+DNL ERV+ R+ LLPVV+G S+ Sbjct: 191 PLTVENVQQQSRLHYRCGSSFILFTVIVGVFVYLLVPFDNLWERVIHRLALLPVVLGTSY 250 Query: 241 EVLKGTNAVRDIPGLKYLGYPGLWLQLLTTKEPKDEMVEVSIASFNRMRELDAAIEAGAY 300 EVL+ TN VR +P L++LGYPGLWLQLLTTKEPKD+ VEV+I SF M + + + EA Sbjct: 251 EVLQLTNKVRHVPVLRFLGYPGLWLQLLTTKEPKDDQVEVAIHSFEEMLKREQSYEASLS 310 Query: 301 TEAS 304 +S Sbjct: 311 APSS 314 >ref|NP_390329.1| yqhQ [Bacillus subtilis] sp|P54515|YQHQ_BACSU Hypothetical protein yqhQ pir||H69959 hypothetical protein yqhQ - Bacillus subtilis dbj|BAA12554.1| YqhQ [Bacillus subtilis] emb|CAB14380.1| yqhQ [Bacillus subtilis subsp. subtilis str. 168] Length = 318 Score = 301 bits (772), Expect = 1e-80, Method: Compositional matrix adjust. Identities = 155/305 (50%), Positives = 204/305 (66%), Gaps = 7/305 (2%) Query: 1 MFGGKHINVTAVRRKNGEITFLEVPRSDKSWVVKLRRIPLLRGLVSIIDSSAKGSKHLNY 60 MFGGKH VTA+RR +G I F ++PR + +++IP LRG+ +II++SA G+KHLN+ Sbjct: 20 MFGGKHHYVTAIRRTDGSIDFFKLPRKHNPKLNIVKKIPFLRGIAAIIEASANGTKHLNF 79 Query: 61 SAESYAEDETEPEDXXXXXXXXXXXXXGWSLGMIFGVAIMGILSFLVGKLIFTLVPVFVE 120 S+E Y D +E E L M +A++G+LSFL K +FTLVPVF+ Sbjct: 80 SSERYGLDPSEDETLEQEEKKSS------GLSMYLSLAVIGVLSFLFSKFVFTLVPVFLA 133 Query: 121 NFLFKNAFDNYILHNLVEGGIKLVLLLVYLWAISQTPVVKRLFQYHGAEHKVISAFEAGE 180 L + F +E KL+LLL Y++ +S TP++KR+FQYHGAEHKVI+ +E Sbjct: 134 E-LTRPIFSLNTAQIAIESLFKLILLLGYIYFLSMTPLIKRVFQYHGAEHKVINCYEQNL 192 Query: 181 ELTVANVQKYSRLHYRCGSSFMMLTIILGVIIYSVFPWDNLVERVVQRIVLLPVVIGISF 240 +TV NVQ SRLHYRCGSSF++ TII+G+ +Y + P D L RV+ R+ L+PVV+GISF Sbjct: 193 PITVENVQNQSRLHYRCGSSFILFTIIVGMFVYLLVPTDPLWLRVIDRVALIPVVLGISF 252 Query: 241 EVLKGTNAVRDIPGLKYLGYPGLWLQLLTTKEPKDEMVEVSIASFNRMRELDAAIEAGAY 300 EVL+ TN VRDI GLK LGYPGLWLQLLTTKEPKDE VEV+I SFN + L+A E Sbjct: 253 EVLQLTNKVRDIRGLKLLGYPGLWLQLLTTKEPKDEQVEVAIESFNELLRLEALSEQNQK 312 Query: 301 TEASV 305 +V Sbjct: 313 PSHNV 317 >ref|NP_833915.1| hypothetical Membrane Spanning Protein [Bacillus cereus ATCC 14579] gb|AAP11116.1| hypothetical Membrane Spanning Protein [Bacillus cereus ATCC 14579] Length = 306 Score = 298 bits (763), Expect = 1e-79, Method: Compositional matrix adjust. Identities = 151/292 (51%), Positives = 204/292 (69%), Gaps = 7/292 (2%) Query: 1 MFGGKHINVTAVRRKNGEITFLEVPRSDKSWVVKLRRIPLLRGLVSIIDSSAKGSKHLNY 60 MFGG+ VTAVRRK+ I F +PR + L++IP LRG+ +I+D+SA G+KHLN+ Sbjct: 19 MFGGREYTVTAVRRKDKSIEFYRLPRVRNKVLSTLKKIPFLRGIAAIVDASANGAKHLNF 78 Query: 61 SAESYAEDETEPEDXXXXXXXXXXXXXGWSLGMIFGVAIMGILSFLVGKLIFTLVPVFVE 120 ++E + + PED L M+ GVA +G+LSF+ GK+IFT VP + Sbjct: 79 ASERF---DVHPEDDEQIANKKEEQS---KLTMVLGVAAVGVLSFIFGKVIFTAVPALLA 132 Query: 121 NFLFKNAFDNYILHNLVEGGIKLVLLLVYLWAISQTPVVKRLFQYHGAEHKVISAFEAGE 180 L + F ++ +VE IKL+LLL Y++ IS TP++KR+FQYHGAEHKVI+A+E Sbjct: 133 E-LTRPIFPSHTGQIIVESVIKLMLLLSYIYFISLTPLIKRVFQYHGAEHKVINAYENNL 191 Query: 181 ELTVANVQKYSRLHYRCGSSFMMLTIILGVIIYSVFPWDNLVERVVQRIVLLPVVIGISF 240 LTV NVQK +RLHYRCGSSF++ T+I+G+ +Y + P D L RV+ RI+L+PVV+GISF Sbjct: 192 PLTVENVQKQTRLHYRCGSSFIIFTVIIGMFVYFLVPTDPLWARVINRILLIPVVLGISF 251 Query: 241 EVLKGTNAVRDIPGLKYLGYPGLWLQLLTTKEPKDEMVEVSIASFNRMRELD 292 EVL+ TN +RDIP L+ LGYPGLWLQLLTTKEP D+ VEV+IASF + L+ Sbjct: 252 EVLQFTNRLRDIPVLRVLGYPGLWLQLLTTKEPTDDQVEVAIASFEELLRLE 303 >ref|NP_658238.1| hypothetical protein predicted by GeneMark [Bacillus anthracis A2012] ref|NP_846653.1| conserved hypothetical protein [Bacillus anthracis str. Ames] gb|AAP28139.1| conserved hypothetical protein [Bacillus anthracis str. Ames] Length = 306 Score = 296 bits (758), Expect = 4e-79, Method: Compositional matrix adjust. Identities = 151/292 (51%), Positives = 204/292 (69%), Gaps = 7/292 (2%) Query: 1 MFGGKHINVTAVRRKNGEITFLEVPRSDKSWVVKLRRIPLLRGLVSIIDSSAKGSKHLNY 60 MFGG+ VTAVRRK+ I F +PR + L++IP LRG+ +I+D+SA G+KHLN+ Sbjct: 19 MFGGREYTVTAVRRKDKSIEFYRLPRVRNKALSILKKIPFLRGIAAIVDASANGAKHLNF 78 Query: 61 SAESYAEDETEPEDXXXXXXXXXXXXXGWSLGMIFGVAIMGILSFLVGKLIFTLVPVFVE 120 ++E + + PE+ L M+ GVA +G+LSF+ GK+IFT VP + Sbjct: 79 ASERF---DVHPEEDEQIANKKEEQS---KLTMVLGVAAVGVLSFIFGKIIFTAVPALLA 132 Query: 121 NFLFKNAFDNYILHNLVEGGIKLVLLLVYLWAISQTPVVKRLFQYHGAEHKVISAFEAGE 180 L + F ++ +VE IKL+LLL Y++ IS TP++KR+FQYHGAEHKVI+A+E Sbjct: 133 E-LTRPIFPSHTGQIIVESVIKLMLLLSYIYFISLTPLIKRVFQYHGAEHKVINAYENNL 191 Query: 181 ELTVANVQKYSRLHYRCGSSFMMLTIILGVIIYSVFPWDNLVERVVQRIVLLPVVIGISF 240 LTV NVQK +RLHYRCGSSF++ T+I+G+ +Y + P D L RVV RI+L+PVV+GISF Sbjct: 192 SLTVENVQKQTRLHYRCGSSFIIFTVIIGMFVYFLVPTDPLWARVVNRILLIPVVLGISF 251 Query: 241 EVLKGTNAVRDIPGLKYLGYPGLWLQLLTTKEPKDEMVEVSIASFNRMRELD 292 EVL+ TN +RDIP L+ LGYPGLWLQLLTTKEP D+ VEV+IASF + L+ Sbjct: 252 EVLQFTNRLRDIPVLRILGYPGLWLQLLTTKEPTDDQVEVAIASFEELLRLE 303 >ref|NP_464878.1| similar to B. subtilis YqhQ protein [Listeria monocytogenes EGD-e] pir||AI1243 B. subtilis YqhQ protein homolog lmo1353 [imported] - Listeria monocytogenes (strain EGD-e) emb|CAC99431.1| lmo1353 [Listeria monocytogenes] Length = 321 Score = 294 bits (753), Expect = 2e-78, Method: Compositional matrix adjust. Identities = 145/292 (49%), Positives = 202/292 (69%), Gaps = 7/292 (2%) Query: 1 MFGGKHINVTAVRRKNGEITFLEVPRSDKSWVVKLRRIPLLRGLVSIIDSSAKGSKHLNY 60 MFGG+ VTA+RR +G + + + ++ WV+++++IP LRG+V++I+SSA GSKHL + Sbjct: 19 MFGGRKQTVTAIRRIDGSLEYFYLEKNSPVWVMRMKKIPFLRGIVALIESSAIGSKHLAF 78 Query: 61 SAESYAEDETEPEDXXXXXXXXXXXXXGWSLGMIFGVAIMGILSFLVGKLIFTLVPVFVE 120 + + Y ED P + M GVA++GILSF+ K + TL+PVF+ Sbjct: 79 ATDRYDEDPNNP------VEEEKIEKKESKVAMWLGVAVIGILSFVFAKFVMTLIPVFLA 132 Query: 121 NFLFKNAFDNYILHNLVEGGIKLVLLLVYLWAISQTPVVKRLFQYHGAEHKVISAFEAGE 180 LF+ +E KL+LLL Y++A+SQTP++KR+FQYHG+EHKVI+ +E Sbjct: 133 E-LFRPIVPGDTAQVFLESLFKLILLLTYIFAVSQTPIIKRVFQYHGSEHKVINCYEENL 191 Query: 181 ELTVANVQKYSRLHYRCGSSFMMLTIILGVIIYSVFPWDNLVERVVQRIVLLPVVIGISF 240 LTV NVQK SRLHYRCGSSF++ T+I+G+ IY + P D L RVV RI+L+PVV+G++F Sbjct: 192 PLTVENVQKQSRLHYRCGSSFILFTVIVGMFIYLLVPTDPLWLRVVDRILLIPVVLGVAF 251 Query: 241 EVLKGTNAVRDIPGLKYLGYPGLWLQLLTTKEPKDEMVEVSIASFNRMRELD 292 EVL+ TN R+IP LKYLG PGLWLQLLTTKEP D+ VEV+IASFN + ++ Sbjct: 252 EVLQLTNKCRNIPVLKYLGVPGLWLQLLTTKEPSDDQVEVAIASFNELLRVE 303 Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF Posted date: Mar 24, 2004 1:53 AM Number of letters in database: 757,237,578 Number of sequences in database: 2,715,099 Lambda K H 0.323 0.140 0.412 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 2715099 Number of Hits to DB: 443,045,568 Number of extensions: 17197351 Number of successful extensions: 47595 Number of sequences better than 1.0e-05: 48 Number of HSP's gapped: 47526 Number of HSP's successfully gapped: 48 Length of query: 315 Length of database: 757,237,578 Length adjustment: 125 Effective length of query: 190 Effective length of database: 417,850,203 Effective search space: 79391538570 Effective search space used: 79391538570 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.9 bits) S2: 126 (53.1 bits)