BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0350.0058.p (136 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF 2,715,099 sequences; 757,237,578 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value pdb|1ON1|A Chain A, Bacillus Subtilis Manganese Transport Regula... 196 2e-49 ref|NP_658241.1| HTH_DTXR, Helix-turn-helix diphteria tox regula... 195 2e-49 ref|NP_243673.1| transcriptional regulator [Bacillus halodurans]... 195 3e-49 ref|NP_390332.1| similar to transcriptional regulator [Bacillus ... 194 5e-49 pdb|1ON2|A Chain A, Bacillus Subtilis Manganese Transport Regula... 192 2e-48 >pdb|1ON1|A Chain A, Bacillus Subtilis Manganese Transport Regulator (Mntr) Bound To Manganese pdb|1ON1|B Chain B, Bacillus Subtilis Manganese Transport Regulator (Mntr) Bound To Manganese Length = 142 Score = 196 bits (497), Expect = 2e-49, Method: Compositional matrix adjust. Identities = 98/128 (76%), Positives = 111/128 (86%) Query: 1 MEDYLERIYKLIDEKGYARVSDIAEGLEVHPSSVTKMIQKLDKDEYLIYEKYRGLVLTSK 60 MEDY+E+IY LI+EKGYARVSDIAE L VHPSSVTKM+QKLDKDEYLIYEKYRGLVLTSK Sbjct: 6 MEDYIEQIYMLIEEKGYARVSDIAEALAVHPSSVTKMVQKLDKDEYLIYEKYRGLVLTSK 65 Query: 61 GKKVGKRLVDRHQLLEEFLGLIGVQQEHIYKDVEGIEHHLSWDSITRIETLVEYFRRDEA 120 GKK+GKRLV RH+LLE+FL +IGV +E IY DVEGIEHHLSW+SI RI LV+YF D+A Sbjct: 66 GKKIGKRLVYRHELLEQFLRIIGVDEEKIYNDVEGIEHHLSWNSIDRIGDLVQYFEEDDA 125 Query: 121 RLQTLYDI 128 R + L I Sbjct: 126 RKKDLKSI 133 >ref|NP_658241.1| HTH_DTXR, Helix-turn-helix diphteria tox regulatory element [Bacillus anthracis A2012] ref|NP_846656.1| iron-dependent repressor family protein [Bacillus anthracis str. Ames] ref|NP_980570.1| iron-dependent repressor family protein [Bacillus cereus ATCC 10987] sp|Q81M27|MNTR_BACAA Transcriptional regulator mntR (Manganese transport regulator) gb|AAP28142.1| iron-dependent repressor family protein [Bacillus anthracis str. Ames] gb|AAS43178.1| iron-dependent repressor family protein [Bacillus cereus ATCC 10987] Length = 142 Score = 195 bits (496), Expect = 2e-49, Method: Compositional matrix adjust. Identities = 95/125 (76%), Positives = 111/125 (88%) Query: 1 MEDYLERIYKLIDEKGYARVSDIAEGLEVHPSSVTKMIQKLDKDEYLIYEKYRGLVLTSK 60 MEDY+E+IY LIDEKGYARVSDIAE L VHPSSVTKM+QKLDKDEYLIYEKYRGLVLTSK Sbjct: 6 MEDYIEQIYLLIDEKGYARVSDIAEALSVHPSSVTKMVQKLDKDEYLIYEKYRGLVLTSK 65 Query: 61 GKKVGKRLVDRHQLLEEFLGLIGVQQEHIYKDVEGIEHHLSWDSITRIETLVEYFRRDEA 120 GKK+G+RLV RH+LLE+F+ +IGV + IY DVEGIEHHLSW++I RI LV+YF +DE Sbjct: 66 GKKIGERLVYRHELLEQFMRIIGVDESKIYNDVEGIEHHLSWEAIDRIGDLVQYFEQDEV 125 Query: 121 RLQTL 125 R++TL Sbjct: 126 RVETL 130 >ref|NP_243673.1| transcriptional regulator [Bacillus halodurans] sp|Q9K943|MNTR_BACHD Transcriptional regulator mntR (Manganese transport regulator) pir||G84000 transcription regulator BH2807 [imported] - Bacillus halodurans (strain C-125) dbj|BAB06526.1| transcriptional regulator [Bacillus halodurans] Length = 139 Score = 195 bits (495), Expect = 3e-49, Method: Compositional matrix adjust. Identities = 94/129 (72%), Positives = 112/129 (86%) Query: 1 MEDYLERIYKLIDEKGYARVSDIAEGLEVHPSSVTKMIQKLDKDEYLIYEKYRGLVLTSK 60 MEDYLERIY LI+EKGYARVSDIAE LEVHPSSVTKM+QKLDK +YL+YE+YRGL+LT+K Sbjct: 6 MEDYLERIYLLIEEKGYARVSDIAEALEVHPSSVTKMVQKLDKSDYLVYERYRGLILTAK 65 Query: 61 GKKVGKRLVDRHQLLEEFLGLIGVQQEHIYKDVEGIEHHLSWDSITRIETLVEYFRRDEA 120 GKK+GKRLV RH LLE+FL +IGV +HIY+DVEGIEHHLSWD+I RI LV+YF+ D + Sbjct: 66 GKKIGKRLVYRHDLLEDFLKMIGVDSDHIYEDVEGIEHHLSWDAIDRIGDLVQYFQEDPS 125 Query: 121 RLQTLYDIH 129 RL L ++ Sbjct: 126 RLNDLREVQ 134 >ref|NP_390332.1| similar to transcriptional regulator [Bacillus subtilis] sp|P54512|MNTR_BACSU Transcriptional regulator mntR (Manganese transport regulator) pir||E69959 transcription regulator homolog yqhN - Bacillus subtilis dbj|BAA12551.1| YqhN [Bacillus subtilis] emb|CAB14383.1| transcriptional regulator (DtxR family) [Bacillus subtilis subsp. subtilis str. 168] Length = 142 Score = 194 bits (493), Expect = 5e-49, Method: Compositional matrix adjust. Identities = 97/128 (75%), Positives = 111/128 (86%) Query: 1 MEDYLERIYKLIDEKGYARVSDIAEGLEVHPSSVTKMIQKLDKDEYLIYEKYRGLVLTSK 60 MEDY+E+IY LI+EKGYARVSDIAE L VHPSSVTKM+QKLDKDEYLIYEKYRGLVLTSK Sbjct: 6 MEDYIEQIYMLIEEKGYARVSDIAEALAVHPSSVTKMVQKLDKDEYLIYEKYRGLVLTSK 65 Query: 61 GKKVGKRLVDRHQLLEEFLGLIGVQQEHIYKDVEGIEHHLSWDSITRIETLVEYFRRDEA 120 GKK+GKRLV RH+LL++FL +IGV +E IY DVEGIEHHLSW+SI RI LV+YF D+A Sbjct: 66 GKKIGKRLVYRHELLDQFLRIIGVDEEKIYNDVEGIEHHLSWNSIDRIGDLVQYFEEDDA 125 Query: 121 RLQTLYDI 128 R + L I Sbjct: 126 RKKDLKSI 133 >pdb|1ON2|A Chain A, Bacillus Subtilis Manganese Transport Regulator (Mntr), D8m Mutant, Bound To Manganese pdb|1ON2|B Chain B, Bacillus Subtilis Manganese Transport Regulator (Mntr), D8m Mutant, Bound To Manganese Length = 142 Score = 192 bits (488), Expect = 2e-48, Method: Compositional matrix adjust. Identities = 97/128 (75%), Positives = 110/128 (85%) Query: 1 MEDYLERIYKLIDEKGYARVSDIAEGLEVHPSSVTKMIQKLDKDEYLIYEKYRGLVLTSK 60 ME Y+E+IY LI+EKGYARVSDIAE L VHPSSVTKM+QKLDKDEYLIYEKYRGLVLTSK Sbjct: 6 MEMYIEQIYMLIEEKGYARVSDIAEALAVHPSSVTKMVQKLDKDEYLIYEKYRGLVLTSK 65 Query: 61 GKKVGKRLVDRHQLLEEFLGLIGVQQEHIYKDVEGIEHHLSWDSITRIETLVEYFRRDEA 120 GKK+GKRLV RH+LLE+FL +IGV +E IY DVEGIEHHLSW+SI RI LV+YF D+A Sbjct: 66 GKKIGKRLVYRHELLEQFLRIIGVDEEKIYNDVEGIEHHLSWNSIDRIGDLVQYFEEDDA 125 Query: 121 RLQTLYDI 128 R + L I Sbjct: 126 RKKDLKSI 133 Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF Posted date: Mar 24, 2004 1:53 AM Number of letters in database: 757,237,578 Number of sequences in database: 2,715,099 Lambda K H 0.319 0.139 0.389 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 2715099 Number of Hits to DB: 197,263,188 Number of extensions: 7852402 Number of successful extensions: 23633 Number of sequences better than 1.0e-05: 142 Number of HSP's gapped: 23625 Number of HSP's successfully gapped: 142 Length of query: 136 Length of database: 757,237,578 Length adjustment: 98 Effective length of query: 38 Effective length of database: 491,157,876 Effective search space: 18663999288 Effective search space used: 18663999288 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 120 (50.8 bits)