BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0350.0057.p (358 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF 2,715,099 sequences; 757,237,578 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|NP_243674.1| spore photoproduct lyase [Bacillus halodurans] ... 438 e-121 ref|NP_980571.1| spore photoproduct lyase [Bacillus cereus ATCC ... 438 e-121 ref|NP_658242.1| hypothetical protein predicted by GeneMark [Bac... 436 e-121 ref|NP_833919.1| Spore photoproduct lyase [Bacillus cereus ATCC ... 434 e-120 ref|NP_389276.1| spore photoproduct lyase [Bacillus subtilis] >g... 432 e-120 >ref|NP_243674.1| spore photoproduct lyase [Bacillus halodurans] pir||H84000 spore photoproduct lyase splB [imported] - Bacillus halodurans (strain C-125) dbj|BAB06527.1| spore photoproduct lyase [Bacillus halodurans] Length = 343 Score = 438 bits (1126), Expect = e-121, Method: Compositional matrix adjust. Identities = 207/338 (61%), Positives = 255/338 (75%) Query: 21 FMPELVFFEPEALKYPKGERIMEWVKAQNIPYRMTTSHNRITNLPGETELEQYKIAKRTL 80 F+P+LV++EP AL+Y G ++E K ++ R TTSHN++ N+PG+ EL+QY+ AK TL Sbjct: 6 FLPQLVYYEPRALEYELGRTLVEKFKHMDVELRETTSHNQVRNIPGKNELQQYRNAKSTL 65 Query: 81 VVGIRKTLTFDQSKPSADYAIPIATGCMGHCHYCYLQTTLGAKPYIRVYVNTGDVIDAAK 140 V+G+RKTLTFD SKPSA+YAIP+ATGCMGHCHYCYLQTTLG+KPYIR YVN ++ AA Sbjct: 66 VIGVRKTLTFDTSKPSAEYAIPLATGCMGHCHYCYLQTTLGSKPYIRTYVNLEEIFAAAD 125 Query: 141 KYIEERAPEITSFEAACTSDPLGLEHITGSLAELITFIADEPLGRLRFVTKYQHVEPLLH 200 +YI ER PEIT FEAACTSD +G++H+T SL + I I GRLRFVTKY HV LL Sbjct: 126 QYIHEREPEITRFEAACTSDIVGIDHLTHSLKKTIEHIGQTEYGRLRFVTKYHHVNHLLD 185 Query: 201 LKHNGHTRIRFSVNADYVIRNFEPATARFEERIEAAGQIARAGYPLGFIIAPIIWHEGWQ 260 HNG TR RFSVNADYV+R+FEP T+ ER+EAA ++A AGYPLGFI+APII H+GWQ Sbjct: 186 ANHNGKTRFRFSVNADYVVRHFEPGTSSLSERLEAAKKVAEAGYPLGFIVAPIILHDGWQ 245 Query: 261 EGYAGLLAKLAQALPPEAGKGLTFEMIQHRFTKTAKTVIEKRYPKSKLEMDIEKRKKKWG 320 GY L +L LP LTFE+IQHRFTK AK VI KRYPK+KL+M+ E+RK KWG Sbjct: 246 RGYRELFERLEATLPRSCRNDLTFELIQHRFTKPAKRVIMKRYPKTKLQMEEEERKYKWG 305 Query: 321 RWGQHKYVYPDEQQTALREFITERIFEHFPEAGIDYFT 358 R+G KYVY DE+ AL+E I I + FP+A I+YFT Sbjct: 306 RYGIGKYVYKDEEAEALKEAIEGYIHQMFPQATIEYFT 343 >ref|NP_980571.1| spore photoproduct lyase [Bacillus cereus ATCC 10987] gb|AAS43179.1| spore photoproduct lyase [Bacillus cereus ATCC 10987] Length = 341 Score = 438 bits (1126), Expect = e-121, Method: Compositional matrix adjust. Identities = 209/338 (61%), Positives = 258/338 (76%) Query: 21 FMPELVFFEPEALKYPKGERIMEWVKAQNIPYRMTTSHNRITNLPGETELEQYKIAKRTL 80 FMP+LV+FEP+AL+YP G+ + E + R TTSHN+I NLPGE +L++Y+ AK TL Sbjct: 4 FMPKLVYFEPKALEYPLGKELYEKFTKMGLEIRETTSHNQIRNLPGENDLQKYRNAKATL 63 Query: 81 VVGIRKTLTFDQSKPSADYAIPIATGCMGHCHYCYLQTTLGAKPYIRVYVNTGDVIDAAK 140 VVG+RKTL FD SKPSA+YAIP+ATGCMGHCHYCYLQTTLG+KPY+RVYVN ++ + A+ Sbjct: 64 VVGVRKTLKFDTSKPSAEYAIPLATGCMGHCHYCYLQTTLGSKPYVRVYVNLDEIFEKAQ 123 Query: 141 KYIEERAPEITSFEAACTSDPLGLEHITGSLAELITFIADEPLGRLRFVTKYQHVEPLLH 200 +Y++ERAPEIT FEAACTSD +G++H+T +L I FI + GRLRFVTKY HV+ LL Sbjct: 124 QYMDERAPEITRFEAACTSDIVGIDHLTHALKRAIEFIGESEHGRLRFVTKYSHVDHLLD 183 Query: 201 LKHNGHTRIRFSVNADYVIRNFEPATARFEERIEAAGQIARAGYPLGFIIAPIIWHEGWQ 260 KHNG TR RFS+N+ YVI+NFEP T+ FEERIEAA ++A AGYPLGFI+AP+ HEGW+ Sbjct: 184 AKHNGKTRFRFSINSRYVIKNFEPGTSPFEERIEAARKVAGAGYPLGFIVAPLYMHEGWE 243 Query: 261 EGYAGLLAKLAQALPPEAGKGLTFEMIQHRFTKTAKTVIEKRYPKSKLEMDIEKRKKKWG 320 EGY L +L AL + LTFE+IQHRFTK AK VI++RYP +KLEMD EKRK KWG Sbjct: 244 EGYRELFERLYNALKDLSIPNLTFELIQHRFTKPAKKVIQERYPNTKLEMDEEKRKYKWG 303 Query: 321 RWGQHKYVYPDEQQTALREFITERIFEHFPEAGIDYFT 358 R+G KYVY + L E I I E FP+A I YFT Sbjct: 304 RYGIGKYVYKKDDAAVLEETIRGYIHEFFPDAEIQYFT 341 >ref|NP_658242.1| hypothetical protein predicted by GeneMark [Bacillus anthracis A2012] ref|NP_846657.1| spore photoproduct lyase [Bacillus anthracis str. Ames] gb|AAP28143.1| spore photoproduct lyase [Bacillus anthracis str. Ames] Length = 341 Score = 436 bits (1122), Expect = e-121, Method: Compositional matrix adjust. Identities = 208/338 (61%), Positives = 258/338 (76%) Query: 21 FMPELVFFEPEALKYPKGERIMEWVKAQNIPYRMTTSHNRITNLPGETELEQYKIAKRTL 80 FMP+LV+FEP+AL+YP G+ + E + R TT HN+I NLPGE +L++Y+ AK TL Sbjct: 4 FMPKLVYFEPKALEYPLGKELYEKFTKMGLEIRETTFHNQIRNLPGENDLQKYRNAKATL 63 Query: 81 VVGIRKTLTFDQSKPSADYAIPIATGCMGHCHYCYLQTTLGAKPYIRVYVNTGDVIDAAK 140 VVG+RKTL FD SKPSA+YAIP+ATGCMGHCHYCYLQTTLG+KPY+RVYVN ++ + A+ Sbjct: 64 VVGVRKTLKFDTSKPSAEYAIPLATGCMGHCHYCYLQTTLGSKPYVRVYVNLDEIFEKAQ 123 Query: 141 KYIEERAPEITSFEAACTSDPLGLEHITGSLAELITFIADEPLGRLRFVTKYQHVEPLLH 200 +Y++ERAPEIT FEAACTSD +G++H+T +L I FI + GRLRFVTKY HV+ LL Sbjct: 124 QYMDERAPEITRFEAACTSDIVGIDHLTHALKRAIEFIGESEHGRLRFVTKYSHVDHLLD 183 Query: 201 LKHNGHTRIRFSVNADYVIRNFEPATARFEERIEAAGQIARAGYPLGFIIAPIIWHEGWQ 260 KHNG TR RFS+N+ YVI+NFEP T+ FEERIEAA ++A AGYPLGFI+AP+ HEGW+ Sbjct: 184 AKHNGKTRFRFSINSRYVIKNFEPGTSPFEERIEAARKVAGAGYPLGFIVAPLYMHEGWE 243 Query: 261 EGYAGLLAKLAQALPPEAGKGLTFEMIQHRFTKTAKTVIEKRYPKSKLEMDIEKRKKKWG 320 EGY L +L AL + LTFE+IQHRFTK AK VI++RYP +KLEMD EKRK KWG Sbjct: 244 EGYRELFERLYNALNDLSIPNLTFELIQHRFTKPAKKVIQERYPNTKLEMDEEKRKYKWG 303 Query: 321 RWGQHKYVYPDEQQTALREFITERIFEHFPEAGIDYFT 358 R+G KYVY + L E I I+E FP+A I YFT Sbjct: 304 RYGIGKYVYKKDDAEVLEETIRGYIYEFFPDAEIQYFT 341 >ref|NP_833919.1| Spore photoproduct lyase [Bacillus cereus ATCC 14579] gb|AAP11120.1| Spore photoproduct lyase [Bacillus cereus ATCC 14579] Length = 337 Score = 434 bits (1117), Expect = e-120, Method: Compositional matrix adjust. Identities = 208/337 (61%), Positives = 255/337 (75%) Query: 22 MPELVFFEPEALKYPKGERIMEWVKAQNIPYRMTTSHNRITNLPGETELEQYKIAKRTLV 81 MP+LV+FEP+AL+YP G+ + E + R TTSHN+I NLPGE +L++Y+ AK TLV Sbjct: 1 MPKLVYFEPKALEYPLGKELYEKFTKMGLEIRETTSHNQIRNLPGENDLQKYRNAKATLV 60 Query: 82 VGIRKTLTFDQSKPSADYAIPIATGCMGHCHYCYLQTTLGAKPYIRVYVNTGDVIDAAKK 141 VG+RKTL FD SKPSA+YAIP+ATGCMGHCHYCYLQTTLG+KPY+RVYVN ++ + A++ Sbjct: 61 VGVRKTLKFDTSKPSAEYAIPLATGCMGHCHYCYLQTTLGSKPYVRVYVNLDEIFEKAQQ 120 Query: 142 YIEERAPEITSFEAACTSDPLGLEHITGSLAELITFIADEPLGRLRFVTKYQHVEPLLHL 201 Y++ERAPEIT FEAACTSD +G++H+T +L I FI + GRLRFVTKY HV+ LL Sbjct: 121 YMDERAPEITRFEAACTSDIVGIDHLTYALKRAIEFIGESEHGRLRFVTKYSHVDHLLDA 180 Query: 202 KHNGHTRIRFSVNADYVIRNFEPATARFEERIEAAGQIARAGYPLGFIIAPIIWHEGWQE 261 KHNG TR RFS+N+ YVI+NFEP T+ FEERIEAA ++A AGYPLGFI+AP+ HEGW+E Sbjct: 181 KHNGKTRFRFSINSRYVIKNFEPGTSPFEERIEAARKVAGAGYPLGFIVAPLYMHEGWEE 240 Query: 262 GYAGLLAKLAQALPPEAGKGLTFEMIQHRFTKTAKTVIEKRYPKSKLEMDIEKRKKKWGR 321 GY L +L AL LTFE+IQHRFTK AK VI++RYP +KLEMD EKRK KWGR Sbjct: 241 GYRELFERLYNALKDMTIPNLTFELIQHRFTKPAKKVIQERYPNTKLEMDEEKRKYKWGR 300 Query: 322 WGQHKYVYPDEQQTALREFITERIFEHFPEAGIDYFT 358 +G KYVY + L E I I E FP A I YFT Sbjct: 301 YGIGKYVYKKDDAAVLEETIRGYINEFFPNAEIQYFT 337 >ref|NP_389276.1| spore photoproduct lyase [Bacillus subtilis] sp|P37956|SPL_BACSU Spore photoproduct lyase pir||C47084 spore photoproduct lyase splB - Bacillus subtilis gb|AAA22416.1| spore photoproduct lyase emb|CAB13266.1| spore photoproduct (thymine dimer) lyase [Bacillus subtilis subsp. subtilis str. 168] Length = 342 Score = 432 bits (1111), Expect = e-120, Method: Compositional matrix adjust. Identities = 200/338 (59%), Positives = 256/338 (75%) Query: 21 FMPELVFFEPEALKYPKGERIMEWVKAQNIPYRMTTSHNRITNLPGETELEQYKIAKRTL 80 F+P+LV+ EP AL+YP G+ + + + I R TTSHN++ N+PG+ L+QY+ AK TL Sbjct: 5 FVPQLVYIEPRALEYPLGQELQDKFENMGIEIRETTSHNQVRNIPGKNHLQQYRNAKSTL 64 Query: 81 VVGIRKTLTFDQSKPSADYAIPIATGCMGHCHYCYLQTTLGAKPYIRVYVNTGDVIDAAK 140 V+G+RKTL FD SKPSA+YAIP ATGCMGHCHYCYLQTT+G+KPYIR YVN +++D A Sbjct: 65 VIGVRKTLKFDSSKPSAEYAIPFATGCMGHCHYCYLQTTMGSKPYIRTYVNVEEILDQAD 124 Query: 141 KYIEERAPEITSFEAACTSDPLGLEHITGSLAELITFIADEPLGRLRFVTKYQHVEPLLH 200 KY++ERAPE T FEA+CTSD +G++H+T +L I LG+LRFVTK+ HV+ LL Sbjct: 125 KYMKERAPEFTRFEASCTSDIVGIDHLTHTLKRAIEHFGQSDLGKLRFVTKFHHVDHLLD 184 Query: 201 LKHNGHTRIRFSVNADYVIRNFEPATARFEERIEAAGQIARAGYPLGFIIAPIIWHEGWQ 260 KHNG TR RFS+NADYVI+NFEP T+ ++RIEAA ++A+AGYPLGFI+API HEGW+ Sbjct: 185 AKHNGKTRFRFSINADYVIKNFEPGTSPLDKRIEAAVKVAKAGYPLGFIVAPIYIHEGWE 244 Query: 261 EGYAGLLAKLAQALPPEAGKGLTFEMIQHRFTKTAKTVIEKRYPKSKLEMDIEKRKKKWG 320 EGY L KL ALP + +TFE+IQHRFTK AK VIEK YPK+KLE+D EKR+ KWG Sbjct: 245 EGYRHLFEKLDAALPQDVRHDITFELIQHRFTKPAKRVIEKNYPKTKLELDEEKRRYKWG 304 Query: 321 RWGQHKYVYPDEQQTALREFITERIFEHFPEAGIDYFT 358 R+G KY+Y +++ ALRE + I FP A I+YFT Sbjct: 305 RYGIGKYIYQKDEEHALREALESYIDTFFPNAKIEYFT 342 Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF Posted date: Mar 24, 2004 1:53 AM Number of letters in database: 757,237,578 Number of sequences in database: 2,715,099 Lambda K H 0.320 0.136 0.415 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 2715099 Number of Hits to DB: 538,139,527 Number of extensions: 21865207 Number of successful extensions: 56698 Number of sequences better than 1.0e-05: 53 Number of HSP's gapped: 56665 Number of HSP's successfully gapped: 53 Length of query: 358 Length of database: 757,237,578 Length adjustment: 127 Effective length of query: 231 Effective length of database: 412,420,005 Effective search space: 95269021155 Effective search space used: 95269021155 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 126 (53.1 bits)