BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0350.0054.p (255 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF 2,715,099 sequences; 757,237,578 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|ZP_00183196.1| hypothetical protein Exigu143401 [Exiguobacte... 202 5e-51 ref|NP_470821.1| metal (zinc) transport protein(ABC transporter,... 201 1e-50 ref|NP_464972.1| metal (zinc) transport protein(ABC transporter,... 201 1e-50 ref|ZP_00060018.1| COG1121: ABC-type Mn/Zn transport systems, AT... 199 4e-50 ref|ZP_00102920.1| COG1121: ABC-type Mn/Zn transport systems, AT... 196 3e-49 >ref|ZP_00183196.1| hypothetical protein Exigu143401 [Exiguobacterium sp. 255-15] Length = 259 Score = 202 bits (515), Expect = 5e-51, Method: Compositional matrix adjust. Identities = 102/222 (45%), Positives = 146/222 (65%), Gaps = 2/222 (0%) Query: 16 QHIIEIQDLSFSYGEQKVITDLSYTVKERDFLGIIGSNGAGKTTLLKMIVGLLPATSGEI 75 + IIEI+ L++ Y +++V+ ++++ V++ FL I+G NG+GK+TL+K ++GLL G I Sbjct: 7 EPIIEIKQLTYDYPDRRVLNEVTFNVQQGQFLAIVGENGSGKSTLIKCMLGLLKP-KGTI 65 Query: 76 KLFGQSVKKFKDWERIGYVPQKNA-FNPLFPATVREVVMSGLYNNKNLIRRVSKAQQQKC 134 +LFGQ F DW RI YV QK A FN FP TV EVV GLY K L RRV+K +QK Sbjct: 66 RLFGQDQAAFSDWWRISYVSQKAASFNSGFPVTVAEVVEMGLYAKKGLFRRVTKQDRQKV 125 Query: 135 DDALEVMRIQDIADKRVGQLSGGQQQRVFLARALINHPDLLILDEPTVGIDAETQAGFFE 194 ALE + + D D +VG LSGGQQQRVF+ARAL+N PDL+ILDEPTVG+D F+E Sbjct: 126 RTALETVGMWDRRDSKVGDLSGGQQQRVFIARALVNDPDLMILDEPTVGVDQRYVKEFYE 185 Query: 195 LIMHMHAHHHMTFLMVSHDIDMIKNYLGEEPVQKNGKINFYC 236 ++ + + TF++V+HDI + + + +G++ C Sbjct: 186 ILEELRRDNKRTFVLVTHDIHFVSKLVTDVIHLVDGRLGCNC 227 >ref|NP_470821.1| metal (zinc) transport protein(ABC transporter, ATP-binding protein) [Listeria innocua] sp|Q926D8|ZURA_LISIN Zinc uptake system ATP-binding protein zurA pir||AD1618 metal (zinc) transport protein(ABC transporter, ATP-binding protein) zurA [imported] - Listeria innocua (strain Clip11262) emb|CAC96716.1| metal (zinc) transport protein(ABC transporter, ATP-binding protein) [Listeria innocua] Length = 257 Score = 201 bits (512), Expect = 1e-50, Method: Compositional matrix adjust. Identities = 93/205 (45%), Positives = 141/205 (68%), Gaps = 1/205 (0%) Query: 18 IIEIQDLSFSYGEQKVITDLSYTVKERDFLGIIGSNGAGKTTLLKMIVGLLPATSGEIKL 77 IIE+ ++S+ Y ++ + ++ + V++ F G+IG NG+GK+T+LK+I+G+L G I L Sbjct: 4 IIEVNNVSYHYDKEHALENIHFQVEKGSFTGLIGPNGSGKSTMLKLILGVLKKQQGSIAL 63 Query: 78 FGQSVKKFKDWERIGYVPQK-NAFNPLFPATVREVVMSGLYNNKNLIRRVSKAQQQKCDD 136 FG+ FKDW +IG+V QK NAFN FPATV+EVV SGL K L + ++ ++ D Sbjct: 64 FGEKQADFKDWVKIGFVSQKSNAFNSAFPATVKEVVASGLTKKKGLFKTLNNQDKEAIDY 123 Query: 137 ALEVMRIQDIADKRVGQLSGGQQQRVFLARALINHPDLLILDEPTVGIDAETQAGFFELI 196 AL+ + + D + +G+LSGGQQQRVF+ARAL++ P+LLILDEPTVG+D E F+EL+ Sbjct: 124 ALKRVEMTDYLHRNIGELSGGQQQRVFIARALVSRPELLILDEPTVGVDVENVKAFYELL 183 Query: 197 MHMHAHHHMTFLMVSHDIDMIKNYL 221 ++ MT L+V+HD+ + Y+ Sbjct: 184 AELNRTEEMTLLLVTHDLVAVNTYV 208 >ref|NP_464972.1| metal (zinc) transport protein(ABC transporter, ATP-binding protein) [Listeria monocytogenes EGD-e] sp|Q9XDA6|ZURA_LISMO Zinc uptake system ATP-binding protein zurA pir||T46652 ABC transporter ZurA [imported] - Listeria monocytogenes pir||AG1255 metal (zinc) transport protein(ABC transporter, ATP-binding protein) zurA [imported] - Listeria monocytogenes (strain EGD-e) gb|AAD37835.1| ABC transporter ZurA [Listeria monocytogenes] emb|CAC99525.1| metal (zinc) transport protein(ABC transporter, ATP-binding protein) [Listeria monocytogenes] Length = 257 Score = 201 bits (511), Expect = 1e-50, Method: Compositional matrix adjust. Identities = 93/207 (44%), Positives = 141/207 (68%), Gaps = 1/207 (0%) Query: 16 QHIIEIQDLSFSYGEQKVITDLSYTVKERDFLGIIGSNGAGKTTLLKMIVGLLPATSGEI 75 + IIE+ ++S+ Y ++ + ++ + V + F G+IG NG+GK+T+LK+I+G+L G I Sbjct: 2 KKIIEVNNVSYHYDKEHALENIHFQVAKGSFTGLIGPNGSGKSTMLKLILGVLKKQQGSI 61 Query: 76 KLFGQSVKKFKDWERIGYVPQK-NAFNPLFPATVREVVMSGLYNNKNLIRRVSKAQQQKC 134 LFG+ FKDW +IG+V QK NAFN FPATV+EVV SGL K L + ++ ++ Sbjct: 62 SLFGEKQADFKDWVKIGFVSQKSNAFNSAFPATVKEVVASGLTKKKGLFKTLNNKDKEDI 121 Query: 135 DDALEVMRIQDIADKRVGQLSGGQQQRVFLARALINHPDLLILDEPTVGIDAETQAGFFE 194 D AL+ + + D + +G+LSGGQQQRVF+ARAL++ P+LLILDEPTVG+D E F+E Sbjct: 122 DYALKRVEMTDYLHRNIGELSGGQQQRVFIARALVSRPELLILDEPTVGVDVENVKAFYE 181 Query: 195 LIMHMHAHHHMTFLMVSHDIDMIKNYL 221 L+ ++ MT L+V+HD+ + Y+ Sbjct: 182 LLAELNRTEEMTLLLVTHDLMAVNTYV 208 >ref|ZP_00060018.1| COG1121: ABC-type Mn/Zn transport systems, ATPase component [Clostridium thermocellum ATCC 27405] Length = 259 Score = 199 bits (507), Expect = 4e-50, Method: Compositional matrix adjust. Identities = 91/201 (45%), Positives = 141/201 (70%), Gaps = 1/201 (0%) Query: 18 IIEIQDLSFSYGEQKVITDLSYTVKERDFLGIIGSNGAGKTTLLKMIVGLLPATSGEIKL 77 +IE+ DLSF YGE+ + ++ ++V++ DF+GIIG NG+GK+TL+K+++ L G+IKL Sbjct: 4 VIEVNDLSFGYGERLIFKNVGFSVEKGDFVGIIGPNGSGKSTLIKLLLRQLKPIKGQIKL 63 Query: 78 FGQSVKKFKDWERIGYVPQK-NAFNPLFPATVREVVMSGLYNNKNLIRRVSKAQQQKCDD 136 GQ ++KF W +IGYV QK N+FN FPATV EVV + L+ L +R+ ++ Sbjct: 64 LGQDIEKFDQWNKIGYVAQKANSFNTSFPATVEEVVSANLFPKIGLFKRIKNKHRELVYK 123 Query: 137 ALEVMRIQDIADKRVGQLSGGQQQRVFLARALINHPDLLILDEPTVGIDAETQAGFFELI 196 ALE + +++ D+ +G LSGGQQQRVF+ARAL++ P+L+ LDEPTVGID+E++ + L+ Sbjct: 124 ALETVGMEEYKDRLIGNLSGGQQQRVFIARALVSEPELIFLDEPTVGIDSESEGALYCLL 183 Query: 197 MHMHAHHHMTFLMVSHDIDMI 217 ++ +T +MV+HDI + Sbjct: 184 GRLNQEKKITIVMVTHDIGAV 204 >ref|ZP_00102920.1| COG1121: ABC-type Mn/Zn transport systems, ATPase component [Desulfitobacterium hafniense] Length = 248 Score = 196 bits (499), Expect = 3e-49, Method: Compositional matrix adjust. Identities = 94/231 (40%), Positives = 148/231 (64%), Gaps = 2/231 (0%) Query: 17 HIIEIQDLSFSYGEQKVITDLSYTVKERDFLGIIGSNGAGKTTLLKMIVGLLPATSGEIK 76 +IIE+ DL FSYG + V + + ++V + DF IIG+NGAGK+TLL++I+G L +G ++ Sbjct: 3 NIIEVDDLGFSYGNEPVFSKIGFSVYKGDFAAIIGANGAGKSTLLRLILGELVPNAGSVR 62 Query: 77 LFGQSVKKFKDWERIGYVPQKNAF-NPLFPATVREVVMSGLYNNKNLIRRVSKAQQQKCD 135 LFGQ ++F++W +IGYVPQ N FPAT E+V + L++ L+R K + K Sbjct: 63 LFGQDSRRFRNWPKIGYVPQAGQHSNANFPATAEEIVRANLFSQIGLLRFPGKEHRDKVQ 122 Query: 136 DALEVMRIQDIADKRVGQLSGGQQQRVFLARALINHPDLLILDEPTVGIDAETQAGFFEL 195 ALE++ ++ A + +G+LSGGQQQR+ LAR L P+++ILDEPT G+DA+T +EL Sbjct: 123 RALELVGMEGYAKRMIGELSGGQQQRIMLARVLAGDPEIMILDEPTTGVDAQTVQSLYEL 182 Query: 196 IMHMHAHHHMTFLMVSHDIDMIKNYLGEEPVQKNGKINFYCRHSHDAQDCA 246 + ++ + +T +MV+HDI Y+ + G + + +H H Q+ A Sbjct: 183 LARLNQENGLTIVMVTHDISRAAKYVSRILCLEEGSLVEH-KHKHPGQELA 232 Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF Posted date: Mar 24, 2004 1:53 AM Number of letters in database: 757,237,578 Number of sequences in database: 2,715,099 Lambda K H 0.322 0.138 0.406 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 2715099 Number of Hits to DB: 381,366,120 Number of extensions: 15487766 Number of successful extensions: 107871 Number of sequences better than 1.0e-05: 20949 Number of HSP's gapped: 88623 Number of HSP's successfully gapped: 22665 Length of query: 255 Length of database: 757,237,578 Length adjustment: 123 Effective length of query: 132 Effective length of database: 423,280,401 Effective search space: 55873012932 Effective search space used: 55873012932 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.9 bits) S2: 124 (52.4 bits)