BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0350.0041.p (276 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF 2,715,099 sequences; 757,237,578 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|NP_691697.1| sugar ABC transporter permease [Oceanobacillus ... 179 5e-44 ref|NP_244549.1| sugar ABC transporter (permease) [Bacillus halo... 172 6e-42 ref|NP_391138.1| similar to sugar permease [Bacillus subtilis] >... 170 3e-41 ref|NP_694043.1| sugar ABC transporter permease [Oceanobacillus ... 168 1e-40 ref|NP_623884.1| Sugar permeases [Thermoanaerobacter tengcongens... 165 1e-39 >ref|NP_691697.1| sugar ABC transporter permease [Oceanobacillus iheyensis HTE831] dbj|BAC12732.1| sugar ABC transporter permease [Oceanobacillus iheyensis HTE831] Length = 290 Score = 179 bits (454), Expect = 5e-44, Method: Compositional matrix adjust. Identities = 88/242 (36%), Positives = 146/242 (60%), Gaps = 1/242 (0%) Query: 35 KDNNAIALNPFGIPKEFVFNNYVEAWVNAKISTYFFNXXXXXXXXXXXXXXXXXMFAFAV 94 K +N FG P EF+ NY AW A + F N + ++ + Sbjct: 50 KSEQEFTVNQFGFPNEFILENYANAWEIANLGVLFKNSIFVCVTATLVTVIIGALASYFL 109 Query: 95 TRMRQGKWNKILFSLVLIGMLIPNNALMLPIYTIVRKLHILNTHWALIIPYIANAIPFTI 154 R + ++NKI+++ + G+LIP +A ++P++ +++ L +LNT L+ PY+A +P TI Sbjct: 110 ARFKF-RFNKIMYTFFIFGLLIPIHATLVPMFILMKNLGLLNTEITLLFPYVAFHLPITI 168 Query: 155 IILAAFMRSLPSEIEEAAVVDGLKAPGIFARIIVPLTVPAMVTVFIVNFLGNWNEFLLAN 214 IL +FM++ P +IEE+A++DG IF II+P++ PA+ TV I+NF+ NWNEF A Sbjct: 169 FILTSFMKAFPKDIEESAIMDGAGIFRIFWSIILPMSRPAIATVVILNFIYNWNEFSFAL 228 Query: 215 YFLSNDELRTLPVGMVQFRDQYQMNYAQMSAGIVYSVLPVVIIYAILQEKIIEGVTAGSV 274 +++ L+TLP+G+ F Q+ NY AG+ S++P+VI Y L+++I+ G+T+G+V Sbjct: 229 VLINDPALQTLPLGLANFAGQFTTNYGAQMAGLTMSLVPIVIFYLFLEKEIVNGMTSGAV 288 Query: 275 KG 276 KG Sbjct: 289 KG 290 >ref|NP_244549.1| sugar ABC transporter (permease) [Bacillus halodurans] pir||B84110 sugar ABC transporter (permease) BH3682 [imported] - Bacillus halodurans (strain C-125) dbj|BAB07401.1| sugar ABC transporter (permease) [Bacillus halodurans] Length = 293 Score = 172 bits (437), Expect = 6e-42, Method: Compositional matrix adjust. Identities = 85/245 (34%), Positives = 142/245 (57%), Gaps = 1/245 (0%) Query: 32 SVKKDNNAIALNPFGIPKEFVFNNYVEAWVNAKISTYFFNXXXXXXXXXXXXXXXXXMFA 91 S+K + L P +P + + NY + W I YF N Sbjct: 50 SLKDNQEVFNLPPLALPTDPKWENYAKVWTEGNIGLYFLNSVIVTGSAVILTVLLASFVT 109 Query: 92 FAVTRMRQGKWNKILFSLVLIGMLIPNNALMLPIYTIVRKLHILNTHWALIIPYIANAIP 151 FA+TRMR K +K++ L ++G++IP ++ ++P++ + +++ A+I+ Y A +P Sbjct: 110 FALTRMRW-KLSKLVLGLFMVGLMIPVHSTLIPLFNFFLNVGLMDHPLAIILTYTAFNLP 168 Query: 152 FTIIILAAFMRSLPSEIEEAAVVDGLKAPGIFARIIVPLTVPAMVTVFIVNFLGNWNEFL 211 TI+IL F +LP E+EEAA++DG +F +II+P+T P + T I+N + NWNEF+ Sbjct: 169 LTIMILLGFYYTLPRELEEAAIMDGCSIHRLFFQIILPMTAPVVATTAIINMIYNWNEFV 228 Query: 212 LANYFLSNDELRTLPVGMVQFRDQYQMNYAQMSAGIVYSVLPVVIIYAILQEKIIEGVTA 271 N F+S+D+ +TL VG+ F QY ++ + A +V S+LP+++ + L +I+EG+TA Sbjct: 229 FVNTFISSDKYKTLTVGIQNFIGQYSTDWGAIGATLVISILPILLAFIFLSNRIVEGITA 288 Query: 272 GSVKG 276 GSVKG Sbjct: 289 GSVKG 293 >ref|NP_391138.1| similar to sugar permease [Bacillus subtilis] sp|O32154|YURM_BACSU Hypothetical ABC transporter permease protein yurM pir||D70018 sugar permease homolog yurM - Bacillus subtilis emb|CAB15248.1| yurM [Bacillus subtilis subsp. subtilis str. 168] Length = 300 Score = 170 bits (431), Expect = 3e-41, Method: Compositional matrix adjust. Identities = 86/246 (34%), Positives = 146/246 (59%), Gaps = 4/246 (1%) Query: 32 SVKKDNNAIALNPFGIPKEFVFNNYVEAWVNAKISTYFFNXXXXXXXXXXXXXXXXXMFA 91 S K+++ I + + +P + N+V AW N IS+YF N A Sbjct: 58 SAFKNSDDIFEHSWSLPSSWHPENFVSAW-NQGISSYFMNSVIVTALTCVITVFISAWAA 116 Query: 92 FAVTRMR-QGKWNKILFSLVLIGMLIPNNALMLPIYTIVRKLHILNTHWALIIPYIANAI 150 + ++R +GK L L G+++ ++P+Y+I++ L + NT+WALI+PY A I Sbjct: 117 YGLSRFEFKGK--GFFLVLCLGGLMLTPQVSLVPLYSIIQSLGLYNTYWALILPYAAYRI 174 Query: 151 PFTIIILAAFMRSLPSEIEEAAVVDGLKAPGIFARIIVPLTVPAMVTVFIVNFLGNWNEF 210 PFTII++ ++ S+ E+EEAA +DG + G+F RI +P++VP +VT I+ WNEF Sbjct: 175 PFTIILIRSYFLSISKELEEAAYLDGCTSFGVFFRIFLPMSVPILVTSGILTAYHTWNEF 234 Query: 211 LLANYFLSNDELRTLPVGMVQFRDQYQMNYAQMSAGIVYSVLPVVIIYAILQEKIIEGVT 270 + A F+ ++ LRT+P G++QFRD Q ++ + AG+ S P++I++ ++Q+ + G+ Sbjct: 235 MFAIIFIDDENLRTIPAGLMQFRDALQTDWGVLLAGLTISAAPIIILFLLMQKYFVRGIA 294 Query: 271 AGSVKG 276 +GSVKG Sbjct: 295 SGSVKG 300 >ref|NP_694043.1| sugar ABC transporter permease [Oceanobacillus iheyensis HTE831] dbj|BAC15077.1| sugar ABC transporter permease [Oceanobacillus iheyensis HTE831] Length = 273 Score = 168 bits (426), Expect = 1e-40, Method: Compositional matrix adjust. Identities = 84/245 (34%), Positives = 148/245 (60%), Gaps = 2/245 (0%) Query: 32 SVKKDNNAIALNPFGIPKEFVFNNYVEAWVNAKISTYFFNXXXXXXXXXXXXXXXXXMFA 91 S+K + A NPF +P + + NY++ + I TYF+N M Sbjct: 31 SLKTNQEIFAGNPFALPTDPKWENYLKVF-EGGIGTYFWNSIWITVVATILTILIASMAT 89 Query: 92 FAVTRMRQGKWNKILFSLVLIGMLIPNNALMLPIYTIVRKLHILNTHWALIIPYIANAIP 151 FA+TRM+ K + + +++IG++IP ++ ++P+Y + +++++ ++++ Y+ +P Sbjct: 90 FAITRMKW-KLSSFVLGIIMIGLMIPIHSALIPLYNMFLNVNLIDNPVSIVVTYMTYNLP 148 Query: 152 FTIIILAAFMRSLPSEIEEAAVVDGLKAPGIFARIIVPLTVPAMVTVFIVNFLGNWNEFL 211 T++IL F +LP EIEEAA++DG +F +II+PL+ P M T I+N + NWNEF+ Sbjct: 149 ITVMILLGFYTTLPREIEEAAIIDGSSIHRLFFKIILPLSAPIMSTTVIINMIYNWNEFV 208 Query: 212 LANYFLSNDELRTLPVGMVQFRDQYQMNYAQMSAGIVYSVLPVVIIYAILQEKIIEGVTA 271 N F+S+D+ +TL VG+ F QY ++ + A +V SVLP++I + +KI+EG++A Sbjct: 209 FVNTFISSDKFKTLTVGIQNFIGQYMTDWGAIGATLVISVLPIIIAFIFFSDKIMEGLSA 268 Query: 272 GSVKG 276 +VKG Sbjct: 269 SAVKG 273 >ref|NP_623884.1| Sugar permeases [Thermoanaerobacter tengcongensis] gb|AAM25488.1| Sugar permeases [Thermoanaerobacter tengcongensis] Length = 289 Score = 165 bits (417), Expect = 1e-39, Method: Compositional matrix adjust. Identities = 95/245 (38%), Positives = 144/245 (58%), Gaps = 1/245 (0%) Query: 32 SVKKDNNAIALNPFGIPKEFVFNNYVEAWVNAKISTYFFNXXXXXXXXXXXXXXXXXMFA 91 S+ K + N IP F NY AW + KI YF N M A Sbjct: 46 SLCKSGDVYGANILKIPSPPQFQNYYIAWKDGKIPHYFINSVIVNVTSVGLTVILSLMMA 105 Query: 92 FAVTRMRQGKWNKILFSLVLIGMLIPNNALMLPIYTIVRKLHILNTHWALIIPYIANAIP 151 +A RM+ NK+L VL+G++IP +A +LP + I +++HIL+++ ALI+PY+A ++P Sbjct: 106 YAFVRMKWKLSNKVLM-YVLLGLMIPIHATLLPNFIIFKEIHILDSYLALILPYVAFSLP 164 Query: 152 FTIIILAAFMRSLPSEIEEAAVVDGLKAPGIFARIIVPLTVPAMVTVFIVNFLGNWNEFL 211 + ++ F+ S+P EIEE+AV+DG I +II PL+ PA+VTV + FL WNEF+ Sbjct: 165 QAVFLMTGFIGSIPREIEESAVMDGAGIFTILFKIIFPLSTPAIVTVTVTTFLTTWNEFI 224 Query: 212 LANYFLSNDELRTLPVGMVQFRDQYQMNYAQMSAGIVYSVLPVVIIYAILQEKIIEGVTA 271 +A +L++D+ RTLP + F QY NYA A + LP +I+Y +L E++ +GVT Sbjct: 225 MAATYLTSDKFRTLPFSVYNFAGQYASNYAVQFAVMTIVALPSLIVYILLNEQVTKGVTL 284 Query: 272 GSVKG 276 G++KG Sbjct: 285 GALKG 289 Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF Posted date: Mar 24, 2004 1:53 AM Number of letters in database: 757,237,578 Number of sequences in database: 2,715,099 Lambda K H 0.327 0.141 0.420 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 2715099 Number of Hits to DB: 340,570,748 Number of extensions: 12126971 Number of successful extensions: 42378 Number of sequences better than 1.0e-05: 1383 Number of HSP's gapped: 41236 Number of HSP's successfully gapped: 1385 Length of query: 276 Length of database: 757,237,578 Length adjustment: 124 Effective length of query: 152 Effective length of database: 420,565,302 Effective search space: 63925925904 Effective search space used: 63925925904 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 15 ( 7.1 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (21.7 bits) S2: 125 (52.8 bits)