BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0350.0039.p (469 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF 2,715,099 sequences; 757,237,578 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|ZP_00020323.1| hypothetical protein [Chloroflexus aurantiacus] 114 4e-24 ref|ZP_00056970.1| COG1653: ABC-type sugar transport system, per... 107 7e-22 dbj|BAD02386.1| putative sugar-binding lipoprotein [Streptomyces... 105 3e-21 ref|NP_624619.1| probable solute-binding protein [Streptomyces c... 99 2e-19 ref|NP_694045.1| sugar ABC transporter sugar-binding protein [Oc... 91 7e-17 >ref|ZP_00020323.1| hypothetical protein [Chloroflexus aurantiacus] Length = 347 Score = 114 bits (285), Expect = 4e-24, Method: Compositional matrix adjust. Identities = 98/348 (28%), Positives = 154/348 (44%), Gaps = 12/348 (3%) Query: 121 PEIFDLFGSPDSKIYAKEGKLLDLTPILEELGIKDKF-----SNLDPFTYEGKIYGLPIG 175 P +F+ + A GK+L+L +ELGI D+ S L +Y LP+ Sbjct: 4 PFMFNYESGAPLRDLAASGKVLELEQTFKELGIYDRLNPGAVSLLKNLVGGSGLYALPLE 63 Query: 176 GSGEGFFYNKEYYTSKGWKAPTTFAELEKQLADIKADGKVPLAGASKAGWVPLMLANHLW 235 + EGF+YNK+ + PTT+ EL + G P A + W L N Sbjct: 64 LNIEGFWYNKQIFAEHNLAVPTTWDELLAVADKLHQAGIQPFAVSGLQKWPLTRLINGYV 123 Query: 236 SRYAGPDVTAKFATGEAKWSDPNVVKGFAKYKEWEDKGYFKKGELGFEYAEYTTQFTSGE 295 R G DV ++ GE K +D + ++ KGYF +G +YA F G Sbjct: 124 MRVYGYDVMSRVVNGELKVTDAGFIAAAQIVQDMAMKGYFGQGVNTLDYAPAQDLFLQGR 183 Query: 296 AILMYDGTWKSSVFKAGQSGEGLIGKVGFFNIPPVDGGVGDQTALMRDVNNGYGFSASAG 355 A + Y G+W F + + I +GFFNIP V+GGVG T +N G S S Sbjct: 184 AAMYYMGSWALRDFNNPELNKIGIDNIGFFNIPLVEGGVG--TLNDYSINAGLTTSFSQK 241 Query: 356 EDERQLAAVKSFIKNMYNEEMQIRGLVEDGVLPAMKIDQAVLNKNITDDLMSEIVAVLNN 415 E R ++K +++ R + E G++ + Q + N++ L VA ++N Sbjct: 242 EFSRNPQGYGEWMKAVFSAYGD-RAMSELGMITGFTVSQ--IPDNVS-PLTRLTVAEIDN 297 Query: 416 SESSFPAFDSLVQADVTTEISNIQIQKLIGGQTTPEKMGEALQKVQEE 463 ++ P F++ A T ++ +Q L+ G +PE+ LQK +E Sbjct: 298 VKNGAPWFEAYFNAR-TQAVATDNVQLLVTGDMSPEEYMAELQKAIDE 344 >ref|ZP_00056970.1| COG1653: ABC-type sugar transport system, periplasmic component [Thermobifida fusca] Length = 434 Score = 107 bits (267), Expect = 7e-22, Method: Compositional matrix adjust. Identities = 97/371 (26%), Positives = 163/371 (43%), Gaps = 24/371 (6%) Query: 105 VNRKEKLRGEMAAGNP--PEIFDLFGSPDSKIYAKEGKLLDLTPILE-ELGIKDKF--SN 159 VN K R ++A G+P P++F +G + Y K +++DLT +E +D F S Sbjct: 74 VNDAYKQRIQVALGSPESPDVFFNWGGGNLAQYVKANQVVDLTEAMEANPEFRDAFLPSV 133 Query: 160 LDPFTYEGKIYGLPIGGS-GEGFFYNKEYYTSKGWKAPTTFAELEKQLADIKADGKVPLA 218 LD +G YG+P+ G FYNK+ + G + PTT++EL + K +G P+ Sbjct: 134 LDVAKIDGSYYGVPMQGVLPVVLFYNKKVFKEVGVEPPTTYSELLDLVDTFKKEGITPIV 193 Query: 219 GASKAGWVPLMLANHLWSRYAGPDVTAKFATG-EAKWSDPNVVKGFAKYKEWEDKGYFKK 277 W LM +L R G +V A G E W DP ++K ++ ++G F Sbjct: 194 LPGAQAWTELMWLEYLTDRIGGAEVFQAIAEGKEGAWKDPAIIKALEMCQDLVERGAFGD 253 Query: 278 --GELGFEYAEYTTQFTSGEAILMYDGTWKSSVFKAGQSGEGLIGKVGFFNIPPVDGGVG 335 L + +T SG+ + GTW+ S + G +GF P ++ G G Sbjct: 254 NFSSLTSDNGSASTVLASGKGAMYLMGTWEISNQQEHNPDFLADGNLGFIAFPALEDGKG 313 Query: 336 DQTALMRDVNNGYGFSASAGEDERQLAAVKSFIKNMYNEEMQIRGLVEDGVLPAMKIDQA 395 D A++ + +N + S D + F+ + + L+E G +PA+ A Sbjct: 314 DPAAIVGNPSNYF----SVNSDSDNVDEAIDFLVETMASDAYVEDLIEIGHVPAV----A 365 Query: 396 VLNKNITDDLMSEIVAVLNNSESSFPAF-----DSLVQADVTTEISNIQIQKLIGGQTTP 450 + + + SE + P+F ++ A T ++N+Q+ L G TP Sbjct: 366 GIEDKLAETEHSEFTTFTYQLVAEAPSFTQSWDQAIPPAAAETMLTNLQLVFL--GDMTP 423 Query: 451 EKMGEALQKVQ 461 E+ EA++ Q Sbjct: 424 EEFAEAMEATQ 434 >dbj|BAD02386.1| putative sugar-binding lipoprotein [Streptomyces thermoviolaceus] Length = 436 Score = 105 bits (261), Expect = 3e-21, Method: Compositional matrix adjust. Identities = 92/359 (25%), Positives = 162/359 (45%), Gaps = 14/359 (3%) Query: 110 KLRGEMAAGNPPEIFDLFGSPDSKIYAKEGKLLDLTPIL---EELGIKDKFSNLDPFTYE 166 KLR M + N P+IF +G K Y + G+L+DLT ++ E L S + + + Sbjct: 85 KLRTAMGSPNAPDIFFNWGGGSIKAYKEAGQLVDLTDVIKSDEVLSTGFLPSVVAAGSLD 144 Query: 167 GKIYGLPIGGSGEGF-FYNKEYYTSKGWKAPTTFAELEKQLADIKADGKVPLAGASKAGW 225 G YG+P+ G FYNK + PTT+ +L +A +K G P A W Sbjct: 145 GHEYGIPMRGMQPVLLFYNKSVFAEHKLTPPTTWDQLLDNVAKLKKAGVTPFALGGVEIW 204 Query: 226 VPLMLANHLWSRYAGPDVTAKFATGEAK-WSDPNVVKGFAKYKEWEDKGYFKKG--ELGF 282 LM +L R GP V K G+A W DP V+K K+ D+G F KG + + Sbjct: 205 PELMWLEYLVDRIGGPQVFDKIRNGDASGWGDPAVLKAAQTVKQLVDEGAFGKGFSSVSY 264 Query: 283 EYAEYTTQFTSGEAILMYDGTWKSSVFKAGQSGEGLIGKVGFFNIPPVDGGVGDQTALMR 342 G+A + G+W+ S + G+ + +G+ P +GG GD ++ Sbjct: 265 NNGGAPALLAKGKAGMHLMGSWEYST-QLGKFPDFAKKDLGWCAFPSFEGGAGDIRNVVG 323 Query: 343 DVNNGYGFSASAGEDERQLAAVKSFIKNMYNEEMQIRGLVEDGVLPAMKIDQAVLNKNIT 402 + N + +A G + +A ++ Y ++ L+++G +P I + +L+ + Sbjct: 324 NPCNYWSVNARTGNKDGAIAFLRDCASEAYTKD-----LIDNGDVPTTTIAENMLDSSPN 378 Query: 403 DDLMSEIVAVLNNSESSFPAFDSLVQADVTTEISNIQIQKLIGGQTTPEKMGEALQKVQ 461 + ++ + + ++D V D + +I KL G+++PE+ AL+ ++ Sbjct: 379 PEFAKFQYQLVQKAPNFTLSWDQAVDPDWQQPMLT-EINKLFVGKSSPEQFVSALKGLK 436 >ref|NP_624619.1| probable solute-binding protein [Streptomyces coelicolor A3(2)] pir||T36478 probable solute-binding protein - Streptomyces coelicolor emb|CAB54175.1| probable solute-binding protein [Streptomyces coelicolor A3(2)] Length = 436 Score = 99.4 bits (246), Expect = 2e-19, Method: Compositional matrix adjust. Identities = 85/360 (23%), Positives = 155/360 (43%), Gaps = 10/360 (2%) Query: 108 KEKLRGEMAAGNPPEIFDLFGSPDSKIYAKEGKLLDLTPILEELG-IKDKF--SNLDPFT 164 K K++ + AG P I +G + YA+ G++ DLT +E +K S+ T Sbjct: 77 KTKIKTAIGAGRAPTIIWGWGGGTLRTYAEAGQVEDLTSWFDEHAEVKKGLFPSSFGAAT 136 Query: 165 YEGKIYGLPIGGSGEG-FFYNKEYYTSKGWKAPTTFAELEKQLADIKADGKVPLAGASKA 223 +GKIY +P +YNK+ + G + P ++ +L + A G PL+ ++ Sbjct: 137 VDGKIYAMPCETVQPIILYYNKKIFDQVGVEPPESWDDLMALVPRFNAKGIAPLSLGGQS 196 Query: 224 GWVPLMLANHLWSRYAGPDVTAKFATGEA-KWSDPNVVKGFAKYKEWEDKGYFKKGELGF 282 W +M L+ R GP+V GE WS P+ + K +E F KG Sbjct: 197 RWTNMMWLEFLFDRIGGPEVFQAVIEGEKDAWSHPDAITALTKVQELVRADGFIKGFSSI 256 Query: 283 EYAEYTTQ--FTSGEAILMYDGTWKSSVFKAGQSGEGLIGKVGFFNIPPVDGGVGDQTAL 340 Q +G A +M G W + +A G +G+ N PPVDGG GD + Sbjct: 257 TADSNADQALLYTGRAAMMLHGAWSYGIQQADGGDFVSSGGLGYMNFPPVDGGKGDPSNA 316 Query: 341 MRDVNNGYGFSASAGEDERQLAAVKSFIKNMYNEEMQIRGLVEDGVLPAMKIDQAVLNKN 400 + + S+ A ++E+++A K F ++ +++ +++G +P + +L + Sbjct: 317 VGNPAQYLSISSKATDEEKKIA--KDFFATGVLQDAEVKAWIDNGSVPVRLGTEKLLAAS 374 Query: 401 ITDDLMSEIVAVLNNSESSFPAFDSLVQADVTTEISNIQIQKLIGGQTTPEKMGEALQKV 460 + D + + + + + ++D + + + I KL +PE+ L V Sbjct: 375 KSADFLQVNYGIASEARTFVQSWDQALSPTAAETLLD-SIVKLFQLSISPEQFAGNLNAV 433 >ref|NP_694045.1| sugar ABC transporter sugar-binding protein [Oceanobacillus iheyensis HTE831] dbj|BAC15079.1| sugar ABC transporter sugar-binding protein [Oceanobacillus iheyensis HTE831] Length = 435 Score = 90.9 bits (224), Expect = 7e-17, Method: Compositional matrix adjust. Identities = 88/383 (22%), Positives = 161/383 (42%), Gaps = 15/383 (3%) Query: 75 KRLAILEDVVGKVQAEVPGLTFKLDGVDSDVNRKEKLRGEMAAGNPPEIFDLFGSPDSKI 134 + ++ ++ + E G+ +L+ V S+ KEK++ + + P++ + + + Sbjct: 52 QHYKVVNQIIEDFETENEGIDIELE-VLSNEQYKEKIKVQSTSNELPDVGMTWAAGYMEP 110 Query: 135 YAKEGKLLDLTPILEELGIKDKF--SNLDPFTYEGKIYGLPIGGSGEGFFYNKEYYTSKG 192 + L ILEE + ++F D F+ + YGLP+ + +YNK + G Sbjct: 111 FVDGNMFASLDDILEEDNLSEEFVAGTTDAFSIDDTAYGLPLELNISSIYYNKAIFDEYG 170 Query: 193 WKAPTTFAELEKQLADIKADGKVPLAGASKAGWVPLMLANHLWSRYAG-PDVTAKFATGE 251 + PTT E + + + + +P+A ++ W M +L +R G DV Sbjct: 171 LEEPTTLDEFNQVVDTLNENDVIPVALGNRDAWTGSMWYMYLANRLGGDEDVLTSAIDRS 230 Query: 252 AKWSDPNVVKGFAKYKEWEDKGYFKKGELGFEYAEYTTQFTSGEAILMYDGTWKSSVFKA 311 + DP ++K + + F G G E + F +A + TW + Sbjct: 231 GSFEDPALLKAAEHLQGLVNDNSFVSGFNGLADQEAKSMFMESQAAMYLIATWDLPNYTT 290 Query: 312 GQS-GEGLIGKVGFFNIPPVDGGVGDQTALMRDVNNGYGFSASAGEDERQLAAVKSFIKN 370 + + VG+F P VDG GD + + G S ++ E V F+K Sbjct: 291 NEDVPQEFRDSVGYFPFPQVDGS-GDFNSYVGGPGVGLFVSENSEVKEEAKTFVSYFVK- 348 Query: 371 MYNEEMQIRGLVEDGVLPAMKIDQAVLNKNITDDLMSEIVAVLNNSESSFPAFDSLVQAD 430 E R + E G++PA KID L+ +L E++ LNN+ S+ + + + Sbjct: 349 ----EWGERAVTEVGIIPATKIDGEALD---LPELYVEVLDDLNNA-SNITLYADVQMSA 400 Query: 431 VTTEISNIQIQKLIGGQTTPEKM 453 ++ IQ L GG+ TPE+ Sbjct: 401 SAAQVHLDMIQALFGGEITPEEF 423 Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF Posted date: Mar 24, 2004 1:53 AM Number of letters in database: 757,237,578 Number of sequences in database: 2,715,099 Lambda K H 0.313 0.133 0.385 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 2715099 Number of Hits to DB: 676,341,896 Number of extensions: 30032031 Number of successful extensions: 57335 Number of sequences better than 1.0e-05: 120 Number of HSP's gapped: 57298 Number of HSP's successfully gapped: 120 Length of query: 469 Length of database: 757,237,578 Length adjustment: 129 Effective length of query: 340 Effective length of database: 406,989,807 Effective search space: 138376534380 Effective search space used: 138376534380 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.2 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 42 (21.9 bits) S2: 128 (53.9 bits)