BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0350.0028.p (533 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF 2,715,099 sequences; 757,237,578 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|NP_623881.1| predicted ATPase [Thermoanaerobacter tengcongen... 128 4e-28 ref|NP_691698.1| hypothetical protein OB0777 [Oceanobacillus ihe... 116 2e-24 ref|NP_244545.1| two-component sensor histidine kinase [Bacillus... 111 5e-23 ref|NP_241988.1| BH1122~unknown conserved protein [Bacillus halo... 110 9e-23 ref|NP_782429.1| two-component sensor kinase yesM [Clostridium t... 105 2e-21 >ref|NP_623881.1| predicted ATPase [Thermoanaerobacter tengcongensis] gb|AAM25485.1| predicted ATPase [Thermoanaerobacter tengcongensis] Length = 593 Score = 128 bits (321), Expect = 4e-28, Method: Compositional matrix adjust. Identities = 75/223 (33%), Positives = 116/223 (52%), Gaps = 1/223 (0%) Query: 312 ITVAYALFGLIIITYFWRSLMTPLQKLAFFVRKYEPGNRVPETP-QRGTNDEVSVLIAST 370 I V LF ++ YF R+L PL++LA ++K GN + + + DE++++I Sbjct: 305 ILVFCLLFAFLVSMYFSRALTHPLERLANSMKKVRQGNLEEKVEFEYHSKDEIAIVIKEY 364 Query: 371 YDMARRLNSLIMYKYXXXXXXXXXXXXXXXXXINPHLLYNTLESIYWKSSLEGNVESAEM 430 M R+N LI INPH LYNTL++I+WK+ + E +EM Sbjct: 365 NRMVERINDLINRILKLEINKREAELKALEAQINPHFLYNTLDTIFWKAEKAKDRELSEM 424 Query: 431 IKELSKLMKISLSRGRELITLEEELEHASAYIKLQQHRYDYVFTVIWNIAPETKTNLIPK 490 I LS+L +++L+RG E I + E E Y+ LQ RY F I+ E IPK Sbjct: 425 IYSLSRLFRLTLNRGEEFIQVRGEKELIERYLFLQSKRYKNKFKYSVKISDEILDYYIPK 484 Query: 491 ITLQPLIENAIIHGVKNMAEDGEILITSVLQEDTILITIADNG 533 + LQP +ENAI+HG++N +E+ + + + + + I DNG Sbjct: 485 LILQPFVENAIVHGLENNSEESFVEVIGEKEGENLKFIIKDNG 527 >ref|NP_691698.1| hypothetical protein OB0777 [Oceanobacillus iheyensis HTE831] dbj|BAC12733.1| hypothetical conserved protein [Oceanobacillus iheyensis HTE831] Length = 577 Score = 116 bits (290), Expect = 2e-24, Method: Compositional matrix adjust. Identities = 70/230 (30%), Positives = 119/230 (51%), Gaps = 1/230 (0%) Query: 304 EMKRVIQYITVAYALFGLIIITYFWRSLMTPLQKLAFFVRKYEPGNRVPETPQRGTNDEV 363 E++ +I ++ L GL+ T+F+ S + + +L ++ E GN + + +NDE+ Sbjct: 286 EVRALIGFLIGILFLAGLLFFTFFYHSNIKRILELTKQTKQVETGN-LTASVHVDSNDEI 344 Query: 364 SVLIASTYDMARRLNSLIMYKYXXXXXXXXXXXXXXXXXINPHLLYNTLESIYWKSSLEG 423 L M + + I +Y INPH LYNTL+ I W + LE Sbjct: 345 GKLGYRFNKMVKTIQKHIDTEYRLKIKQKESELKVLQNQINPHFLYNTLDMIRWNARLEN 404 Query: 424 NVESAEMIKELSKLMKISLSRGRELITLEEELEHASAYIKLQQHRYDYVFTVIWNIAPET 483 E++++I+ LSK+ +++L+ G+ L+ EEE+E++ AY++LQ+ R + + Sbjct: 405 APETSQLIERLSKIFRMNLNNGKSLVKFEEEVEYSQAYLELQKKRLGEKLDYQLVMEEQL 464 Query: 484 KTNLIPKITLQPLIENAIIHGVKNMAEDGEILITSVLQEDTILITIADNG 533 K + K +QPLIEN+I HG KN+ G I I E+ +I + DNG Sbjct: 465 KGYYVMKQMIQPLIENSIQHGFKNLPRQGIIRIHCYRDENQAVIDVIDNG 514 >ref|NP_244545.1| two-component sensor histidine kinase [Bacillus halodurans] pir||F84109 two-component sensor histidine kinase BH3678 [imported] - Bacillus halodurans (strain C-125) dbj|BAB07397.1| two-component sensor histidine kinase [Bacillus halodurans] Length = 605 Score = 111 bits (277), Expect = 5e-23, Method: Compositional matrix adjust. Identities = 88/309 (28%), Positives = 152/309 (49%), Gaps = 15/309 (4%) Query: 236 DMNNQVLASTTNATGEVIELPEGAETGD---PEGTEDIIT---DDFIYVVNNNHAFAQKL 289 DM+NQ +A + G+ I E D P+ + ++T D++ V ++ L Sbjct: 219 DMDNQYVA-LFDQQGQFITTNMPEEWHDQIAPKTDKQVVTMDGTDYVRVEAASNKTGWSL 277 Query: 290 VYKVPVKALLQQQKEMKRVIQYITVAYALFGLIIITYFWRSLMT-PLQKLAFFVRKYEPG 348 + PV +L Q + I + L I TYF SL+T P+Q+L +R G Sbjct: 278 LIYTPVHSLAQGITGIGTAI-LVAGGIGLLIFTISTYFLSSLITNPIQRLTHAMRFGTLG 336 Query: 349 NRVPETPQRGTNDEVSVLIASTYDMARRLNSLIMYKYXXXXXXXXXXXXXXXXXINPHLL 408 + E+P + E++ L + M N LI Y INPH L Sbjct: 337 -ALKESPSIASTVELNELNDTYNRMVETTNYLIKVVYEQELTQSRAELKALQSQINPHFL 395 Query: 409 YNTLESIYWKSSLEGNVESAEMIKELSKLMKISLS--RGRELITLEEELEHASAYIKLQQ 466 +NTLE++YW S E + E AE++ L++L + ++S +G + + L EE +H Y+ + + Sbjct: 396 FNTLEALYW-SLEEKDEEQAEVVIALAELFRYTISDVKGDDWVALHEEFDHIERYLHIMK 454 Query: 467 HRYDYVFTVIWNIAPETKTNLIPKITLQPLIENAIIHGVKNMAEDGEILIT--SVLQEDT 524 RYD+ + P + IPK+ +QP++ENAIIHG+ N + G++ ++ + +++ Sbjct: 455 LRYDHRLAWEIELDPSLREVQIPKLLIQPVVENAIIHGIGNKVDGGKVQVSAYTSVKQGY 514 Query: 525 ILITIADNG 533 + IT+ D+G Sbjct: 515 VNITVRDDG 523 >ref|NP_241988.1| BH1122~unknown conserved protein [Bacillus halodurans] pir||B83790 hypothetical protein BH1122 [imported] - Bacillus halodurans (strain C-125) dbj|BAB04841.1| BH1122~unknown conserved protein [Bacillus halodurans] Length = 586 Score = 110 bits (275), Expect = 9e-23, Method: Compositional matrix adjust. Identities = 95/376 (25%), Positives = 169/376 (44%), Gaps = 23/376 (6%) Query: 169 GRGYLMFAEKLS-PQAENLKTLTYVRAVNSIYRGAGTI-GVLVVTKMESKIGESLKSIXX 226 G+ + E++S A + L+ R ++++ G I GVLV+ S I LK Sbjct: 151 GKNSVWIGERVSYTMAGEERVLSLAR---NVFQARGEIEGVLVLNVHASTIETWLKQ--K 205 Query: 227 XXEGEIYLTDMNNQVLASTTNATGEVIELP---------EGAETGDPEGTEDIITDDFIY 277 E + + D + +A++ V+ P +TG+ + ED + + Sbjct: 206 SQESNLMIIDKQGRFVATSDPQHESVLYSPYFDQYLPYQPTMQTGENDKDEDALE---VS 262 Query: 278 VVNNNHAFAQKLVYKVPVKALLQQQKEMKRVIQYITVAYALFGLIIITYFWRSLMTPLQK 337 + N + K V P L + + M ++ I + L++ + TP+ + Sbjct: 263 MPIPNTEWTLKQV--TPYSELTEGSRRMAAILVIIGAIMIVVALLVTYSLTKKFTTPIYE 320 Query: 338 LAFFVRKYEPGNRVPETPQRGTNDEVSVLIASTYDMARRLNSLIMYKYXXXXXXXXXXXX 397 L + KY + E P N E L + RR N L + Sbjct: 321 LKNVLSKYPDQDLSGELPSDYRN-EFGELFEGYKGLIRRNNELYRSLHRQYKRQREAEIK 379 Query: 398 XXXXXINPHLLYNTLESIYWKSSLEGNVESAEMIKELSKLMKISLSRGRELITLEEELEH 457 INPH LYNTL+ + W + +G+ + M++ L ++++I LS G ++ LE+E+E+ Sbjct: 380 ALQANINPHFLYNTLDQLNWMAIEKGDRTMSHMLENLGQMLRIGLSNGESILPLEKEVEY 439 Query: 458 ASAYIKLQQHRYDYVFTVIWNIAPETKTNLIPKITLQPLIENAIIHGVKNMAEDGEILIT 517 Y+K+Q+ + T ++ LIPK+TLQP +EN IHG ++ DGE++I Sbjct: 440 LKYYLKIQKLKMGERLTYTVDVPVMLYRYLIPKLTLQPFVENCFIHGFQD-GRDGEVVIR 498 Query: 518 SVLQEDTILITIADNG 533 ++ ++ I++TI DNG Sbjct: 499 AMEDQNHIVMTIQDNG 514 >ref|NP_782429.1| two-component sensor kinase yesM [Clostridium tetani E88] gb|AAO36366.1| two-component sensor kinase yesM [Clostridium tetani E88] Length = 577 Score = 105 bits (263), Expect = 2e-21, Method: Compositional matrix adjust. Identities = 65/204 (31%), Positives = 102/204 (50%), Gaps = 1/204 (0%) Query: 330 SLMTPLQKLAFFVRKYEPGNRVPETPQRGTNDEVSVLIASTYDMARRLNSLIMYKYXXXX 389 S++ P+ +L + + GN + NDE+S+L M + LI Y Sbjct: 305 SIVKPIHRLKSNMLEISKGN-FDSYYEIKNNDEISILGQVFNQMLTDIKRLINKVYQVEK 363 Query: 390 XXXXXXXXXXXXXINPHLLYNTLESIYWKSSLEGNVESAEMIKELSKLMKISLSRGRELI 449 INPH LYNTL++I WK+ E +MI LS +ISLS G+E I Sbjct: 364 QKRSAELRVLQSQINPHFLYNTLDTIQWKALEYNAFEVVDMINYLSNFFRISLSDGKEFI 423 Query: 450 TLEEELEHASAYIKLQQHRYDYVFTVIWNIAPETKTNLIPKITLQPLIENAIIHGVKNMA 509 T+ +E+ H S Y+++Q+ RY + ++ LIPK+ +QPL+EN+I HG+K Sbjct: 424 TISDEVAHVSNYLEIQKIRYKDKISYSMDVDSSLDQYLIPKLIVQPLVENSIYHGLKLQK 483 Query: 510 EDGEILITSVLQEDTILITIADNG 533 G I ++ ++ + I + DNG Sbjct: 484 HKGIINVSISSKDGFLFIKVIDNG 507 Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF Posted date: Mar 24, 2004 1:53 AM Number of letters in database: 757,237,578 Number of sequences in database: 2,715,099 Lambda K H 0.318 0.136 0.382 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 2715099 Number of Hits to DB: 725,067,635 Number of extensions: 29916459 Number of successful extensions: 80425 Number of sequences better than 1.0e-05: 165 Number of HSP's gapped: 80293 Number of HSP's successfully gapped: 165 Length of query: 533 Length of database: 757,237,578 Length adjustment: 130 Effective length of query: 403 Effective length of database: 404,274,708 Effective search space: 162922707324 Effective search space used: 162922707324 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 128 (53.9 bits)