BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0350.0009.p (204 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF 2,715,099 sequences; 757,237,578 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|NP_243159.1| BH2293~unknown conserved protein [Bacillus halo... 91 2e-17 ref|NP_390449.1| similar to hypothetical proteins [Bacillus subt... 70 4e-11 ref|NP_627662.1| putative integral membrane protein [Streptomyce... 60 3e-08 ref|NP_798400.1| conserved hypothetical protein [Vibrio parahaem... 55 9e-07 ref|NP_561495.1| conserved hypothetical protein [Clostridium per... 53 4e-06 >ref|NP_243159.1| BH2293~unknown conserved protein [Bacillus halodurans] pir||E83936 hypothetical protein BH2293 [imported] - Bacillus halodurans (strain C-125) dbj|BAB06012.1| BH2293~unknown conserved protein [Bacillus halodurans] Length = 212 Score = 90.5 bits (223), Expect = 2e-17, Method: Compositional matrix adjust. Identities = 49/168 (29%), Positives = 87/168 (51%), Gaps = 4/168 (2%) Query: 13 GIFLAFIYRYD--ILAWLRQD--HNXXXXXXXXXXXXXFPVVPYKLIIGIYGYAYGSLTA 68 G+ A IY Y +L W++Q FP++PY +I G+ G AYG Sbjct: 12 GVIAALIYLYGEWLLEWIQQGGARFIFLTVIIATLLALFPIIPYPIIGGVLGAAYGPFLG 71 Query: 69 ALICWSASTLAGAVIYAVVKYMFKEKAGKYLTSVSALGKFTSAVQRRPFAAVVLARLVPV 128 + + W S+LA +++ V+Y +++ + + K T+ ++ F A+ + RL+P+ Sbjct: 72 SAVTWIGSSLASIIMFMFVRYGYQDWGLSLIRRSDLVTKVTAMFEKNAFMAIFITRLIPI 131 Query: 129 IPQMGVNIYAGAAGLPFWSYLAASGLGKIPGIALYAFLGGQLFDHPRN 176 IP + VNIY+ + + F +Y AS LGK+P + L+A +G + +P Sbjct: 132 IPSIIVNIYSALSRVSFINYSIASSLGKVPSMILFAVVGNSIATNPSQ 179 >ref|NP_390449.1| similar to hypothetical proteins [Bacillus subtilis] sp|P54449|YQED_BACSU Hypothetical protein yqeD pir||H69950 conserved hypothetical protein yqeD - Bacillus subtilis dbj|BAA12440.1| YqeD [Bacillus subtilis] emb|CAB14513.1| yqeD [Bacillus subtilis subsp. subtilis str. 168] Length = 208 Score = 69.7 bits (169), Expect = 4e-11, Method: Compositional matrix adjust. Identities = 36/123 (29%), Positives = 67/123 (54%) Query: 47 FPVVPYKLIIGIYGYAYGSLTAALICWSASTLAGAVIYAVVKYMFKEKAGKYLTSVSALG 106 FP+VP+ LI + G +G+ I + S L +++ + +Y F++ A K + + A+ Sbjct: 50 FPIVPFALIAALNGAVFGTANGIWITLTGSMLGTILLFFLARYSFRDWARKKVQAYPAIQ 109 Query: 107 KFTSAVQRRPFAAVVLARLVPVIPQMGVNIYAGAAGLPFWSYLAASGLGKIPGIALYAFL 166 + ++ + F AV+L RL+PVIP + +N+ G + + + + AS +GKIP I + Sbjct: 110 SYEASFNKNAFTAVLLGRLIPVIPSLVMNVICGLSQVRWHVFFFASLIGKIPNIVVVTIA 169 Query: 167 GGQ 169 G Sbjct: 170 GAN 172 >ref|NP_627662.1| putative integral membrane protein [Streptomyces coelicolor A3(2)] emb|CAB61866.1| putative integral membrane protein [Streptomyces coelicolor A3(2)] Length = 249 Score = 60.1 bits (144), Expect = 3e-08, Method: Compositional matrix adjust. Identities = 41/124 (33%), Positives = 65/124 (52%), Gaps = 1/124 (0%) Query: 49 VVPYKLIIGIYGYAYGSLTAALICWSASTLAGAVIYAVVKYMFKEKAGKYLTSVSALGKF 108 ++P ++ G +G A +T A+ + + +++ + +Y S L + Sbjct: 86 LLPGSVLTASAGALFGLAVGAGAVLVGATAGAALSFGLARWLGRPVVARYAGS-GRLARL 144 Query: 109 TSAVQRRPFAAVVLARLVPVIPQMGVNIYAGAAGLPFWSYLAASGLGKIPGIALYAFLGG 168 + + RR F AV+L RLVP+ P +N AG AG+ F SY+AA+ LG IPG +Y LGG Sbjct: 145 DAFLTRRGFVAVLLVRLVPLFPFSVINYGAGVAGVRFSSYVAATALGIIPGTLVYTGLGG 204 Query: 169 QLFD 172 L D Sbjct: 205 SLGD 208 >ref|NP_798400.1| conserved hypothetical protein [Vibrio parahaemolyticus RIMD 2210633] dbj|BAC60284.1| conserved hypothetical protein [Vibrio parahaemolyticus] Length = 222 Score = 55.1 bits (131), Expect = 9e-07, Method: Compositional matrix adjust. Identities = 33/120 (27%), Positives = 60/120 (50%), Gaps = 6/120 (5%) Query: 51 PYKLIIGIYGYAYGSLTAALICWSASTLAGAVIYAVVKYMFKEKAGKYLTSV--SALGKF 108 P + I ++GY Y LI A YA +++ G +L + +F Sbjct: 62 PKQAIALVFGYLYHVQLGVLITLFACVFGATFNYACARFLI----GNWLYRRFPKKMTRF 117 Query: 109 TSAVQRRPFAAVVLARLVPVIPQMGVNIYAGAAGLPFWSYLAASGLGKIPGIALYAFLGG 168 S R+PF ++L RL P+ + N+ +G+ +PF+++++AS LG +P I ++A +G Sbjct: 118 NSFASRKPFYKILLLRLFPIGNNVVTNVLSGSVRVPFFAFISASLLGYLPQIIIFALMGA 177 >ref|NP_561495.1| conserved hypothetical protein [Clostridium perfringens] dbj|BAB80285.1| conserved hypothetical protein [Clostridium perfringens str. 13] Length = 231 Score = 53.1 bits (126), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 30/108 (27%), Positives = 60/108 (55%), Gaps = 1/108 (0%) Query: 63 YGSLTAALICWSASTLAGAVIYAVVKYMFKEKAGKYLTSVSALGKFTSAVQRRPFAAVVL 122 +G + A++ WS++ A+ + + + + ++ K LTS AL ++ +++ Sbjct: 88 FGWVKGAILSWSSAMAGAALCFYIARGLGRDAVEK-LTSKFALKDIDGFFEKYGKHTILI 146 Query: 123 ARLVPVIPQMGVNIYAGAAGLPFWSYLAASGLGKIPGIALYAFLGGQL 170 ARL+P I V+ AG + FWS+ A+G+G++P +Y+++GG L Sbjct: 147 ARLLPFISFDLVSYAAGLTSMNFWSFFIATGIGQLPATIVYSYVGGML 194 Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF Posted date: Mar 24, 2004 1:53 AM Number of letters in database: 757,237,578 Number of sequences in database: 2,715,099 Lambda K H 0.327 0.142 0.451 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 2715099 Number of Hits to DB: 254,455,181 Number of extensions: 8746215 Number of successful extensions: 26775 Number of sequences better than 1.0e-05: 26 Number of HSP's gapped: 26818 Number of HSP's successfully gapped: 26 Length of query: 204 Length of database: 757,237,578 Length adjustment: 120 Effective length of query: 84 Effective length of database: 431,425,698 Effective search space: 36239758632 Effective search space used: 36239758632 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 15 ( 7.1 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (21.7 bits) S2: 123 (52.0 bits)