BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0350.0008.p (334 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF 2,715,099 sequences; 757,237,578 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|NP_835097.1| Peptide methionine sulfoxide reductase [Bacillu... 476 e-133 ref|NP_981861.1| peptide methionine sulfoxide reductase [Bacillu... 475 e-133 gb|AAN87501.1| Peptide methionine sulfoxide reductase [Heliobaci... 474 e-132 ref|NP_653905.1| DUF25, Domain of unknown function DUF25 [Bacill... 473 e-132 ref|NP_692655.1| peptide methionine sulfoxide reductase [Oceanob... 447 e-124 >ref|NP_835097.1| Peptide methionine sulfoxide reductase [Bacillus cereus ATCC 14579] gb|AAP12298.1| Peptide methionine sulfoxide reductase [Bacillus cereus ATCC 14579] Length = 321 Score = 476 bits (1224), Expect = e-133, Method: Compositional matrix adjust. Identities = 224/317 (70%), Positives = 257/317 (81%), Gaps = 2/317 (0%) Query: 15 ISGKTEKATFAGGCFWCMVSPFEELPGIVEVVSGYTGGHTVNPTYEEVCSETTGHVEAVQ 74 ++ K E ATFAGGCFWCMVSPFEE+ GI++VVSGYTGGH NPTY+EVCSETTGH EAVQ Sbjct: 3 VNEKVELATFAGGCFWCMVSPFEEMEGIIKVVSGYTGGHKENPTYKEVCSETTGHYEAVQ 62 Query: 75 ITFQPDIFPYTKLLELFWQQIDPTDAGGQFYDRGTSYGTAIFTHSEEQRQQAEASKAALQ 134 ITF + PY +LL ++W+QIDPTD GGQF+DRG SY T IF H+EEQ ++AEASK L+ Sbjct: 63 ITFDANKMPYEELLNIYWRQIDPTDIGGQFHDRGQSYETVIFYHNEEQHKKAEASKEELE 122 Query: 135 ASGRFSAPIVTPILPAKPFYRAEEYHQGYHHKNPGHYKRYRQGSGRDAFIESHWKHKEDK 194 SGRFS PI T ILPA FY AEEYHQGYH KN Y+ YR+GSGRDAFI+ HW +D Sbjct: 123 QSGRFSKPIATKILPAATFYPAEEYHQGYHKKNTFRYELYRKGSGRDAFIKQHW--PKDN 180 Query: 195 ASLKERLTPLQYEVTQNNATESPFRNEFWDHHGEGIYVDIVSGEPLFSSQDKFDSGCGWP 254 A LKE+L +QY VTQ N TE PFRNE+W+H EG+YVDIVSGEPLF+S DKFDSGCGWP Sbjct: 181 AHLKEKLNEMQYYVTQENGTEPPFRNEYWNHKEEGLYVDIVSGEPLFTSLDKFDSGCGWP 240 Query: 255 SFTRPIRDYSVKEKTDLSHLMIRTEVRSKTADSHLGHVFNDGPGPNGLRYCINSAALRFV 314 SFT+P+ SVKEK D+SH M RTEVRSK DSHLGHVF DGPGPNGLRYCINSAALRF+ Sbjct: 241 SFTKPVMSASVKEKMDVSHNMTRTEVRSKEGDSHLGHVFPDGPGPNGLRYCINSAALRFI 300 Query: 315 PKEDLEKEGYGEYRALF 331 PKE+LEKEGY ++ LF Sbjct: 301 PKEELEKEGYSDFLILF 317 >ref|NP_981861.1| peptide methionine sulfoxide reductase [Bacillus cereus ATCC 10987] gb|AAS44469.1| peptide methionine sulfoxide reductase [Bacillus cereus ATCC 10987] Length = 321 Score = 475 bits (1223), Expect = e-133, Method: Compositional matrix adjust. Identities = 224/317 (70%), Positives = 257/317 (81%), Gaps = 2/317 (0%) Query: 15 ISGKTEKATFAGGCFWCMVSPFEELPGIVEVVSGYTGGHTVNPTYEEVCSETTGHVEAVQ 74 ++ K E ATFAGGCFWCMVSPFEE+ GI++VVSGYTGGH NPTY+EVCSETTGH EAVQ Sbjct: 3 VNEKVELATFAGGCFWCMVSPFEEMEGIIKVVSGYTGGHKENPTYKEVCSETTGHYEAVQ 62 Query: 75 ITFQPDIFPYTKLLELFWQQIDPTDAGGQFYDRGTSYGTAIFTHSEEQRQQAEASKAALQ 134 ITF + PY +LL ++W+QIDPTD GGQF+DRG SY T IF H+EEQ ++AEASK L Sbjct: 63 ITFDANKMPYEELLNIYWRQIDPTDVGGQFHDRGQSYETVIFYHNEEQHKKAEASKEGLA 122 Query: 135 ASGRFSAPIVTPILPAKPFYRAEEYHQGYHHKNPGHYKRYRQGSGRDAFIESHWKHKEDK 194 SGRFS PI T ILPA FY AEEYHQGYH KN Y+ YR+GSGRDAFI+ HW +D Sbjct: 123 RSGRFSKPIATKILPAATFYPAEEYHQGYHKKNEFRYELYRKGSGRDAFIKQHW--PKDN 180 Query: 195 ASLKERLTPLQYEVTQNNATESPFRNEFWDHHGEGIYVDIVSGEPLFSSQDKFDSGCGWP 254 A LKE+L +Q+ VTQ N TE PFRNE+W+H EG+YVDIVSGEPLF+S DKFDSGCGWP Sbjct: 181 AHLKEKLNEMQFYVTQENGTEPPFRNEYWNHKEEGLYVDIVSGEPLFTSLDKFDSGCGWP 240 Query: 255 SFTRPIRDYSVKEKTDLSHLMIRTEVRSKTADSHLGHVFNDGPGPNGLRYCINSAALRFV 314 SFT+P+ SVKEK D+SH M RTEVRSK DSHLGHVF DGPGPNGLRYCINSAALRF+ Sbjct: 241 SFTKPVMSASVKEKMDVSHNMTRTEVRSKEGDSHLGHVFPDGPGPNGLRYCINSAALRFI 300 Query: 315 PKEDLEKEGYGEYRALF 331 PKE+LEKEGYG++ LF Sbjct: 301 PKEELEKEGYGDFLILF 317 >gb|AAN87501.1| Peptide methionine sulfoxide reductase [Heliobacillus mobilis] Length = 337 Score = 474 bits (1220), Expect = e-132, Method: Compositional matrix adjust. Identities = 224/320 (70%), Positives = 260/320 (81%), Gaps = 1/320 (0%) Query: 13 DNISGKTEKATFAGGCFWCMVSPFEELPGIVEVVSGYTGGHTVNPTYEEVCSETTGHVEA 72 D +G+T ATFAGGCFWCMV PFEEL GI +++SGYTGGH NPTY EVCS+ TGH EA Sbjct: 15 DGGNGQTALATFAGGCFWCMVGPFEELDGIHQILSGYTGGHKENPTYHEVCSDETGHFEA 74 Query: 73 VQITFQPDIFPYTKLLELFWQQIDPTDAGGQFYDRGTSYGTAIFTHSEEQRQQAEASKAA 132 +QIT+ P Y LL+ FW+QIDPTD GGQF+DRG+SY TAIF H E QR++AEASK Sbjct: 75 IQITYDPAAVAYETLLDRFWRQIDPTDPGGQFHDRGSSYRTAIFYHDEGQREKAEASKKE 134 Query: 133 LQASGRFSAPIVTPILPAKPFYRAEEYHQGYHHKNPGHYKRYRQGSGRDAFIESHWKHKE 192 L+ S RF PIVT ILPA FY AE YHQ YH K+P Y YR GSGRDAF+E +W+ K Sbjct: 135 LEESRRFDKPIVTQILPASTFYPAEAYHQDYHKKSPFRYGLYRMGSGRDAFLEQYWR-KP 193 Query: 193 DKASLKERLTPLQYEVTQNNATESPFRNEFWDHHGEGIYVDIVSGEPLFSSQDKFDSGCG 252 +KA LK++L+P+QYEVTQNN TE PFRNE+WD+H EGIYVDIVSGEPLFSS DKFDSGCG Sbjct: 194 EKAQLKQKLSPVQYEVTQNNGTEPPFRNEYWDNHREGIYVDIVSGEPLFSSIDKFDSGCG 253 Query: 253 WPSFTRPIRDYSVKEKTDLSHLMIRTEVRSKTADSHLGHVFNDGPGPNGLRYCINSAALR 312 WPSF+RP+ + VKEK DLSH M RTEVRS+ ADSHLGHVF+DGP P GLRYCINSAALR Sbjct: 254 WPSFSRPLHEEKVKEKMDLSHGMTRTEVRSQGADSHLGHVFDDGPAPGGLRYCINSAALR 313 Query: 313 FVPKEDLEKEGYGEYRALFQ 332 F+PKEDLEKEGYG+Y++LF+ Sbjct: 314 FIPKEDLEKEGYGQYKSLFE 333 >ref|NP_653905.1| DUF25, Domain of unknown function DUF25 [Bacillus anthracis A2012] ref|NP_847833.1| peptide methionine sulfoxide reductase [Bacillus anthracis str. Ames] gb|AAP29319.1| peptide methionine sulfoxide reductase [Bacillus anthracis str. Ames] Length = 321 Score = 473 bits (1217), Expect = e-132, Method: Compositional matrix adjust. Identities = 223/317 (70%), Positives = 256/317 (80%), Gaps = 2/317 (0%) Query: 15 ISGKTEKATFAGGCFWCMVSPFEELPGIVEVVSGYTGGHTVNPTYEEVCSETTGHVEAVQ 74 ++ K E ATFAGGCFWCMVSPFEE+ GI++VVSGYTGGH NPTY+EVCSETTGH EAVQ Sbjct: 3 VNEKVELATFAGGCFWCMVSPFEEMVGIIKVVSGYTGGHKENPTYKEVCSETTGHYEAVQ 62 Query: 75 ITFQPDIFPYTKLLELFWQQIDPTDAGGQFYDRGTSYGTAIFTHSEEQRQQAEASKAALQ 134 ITF + PY +LL ++W+QIDPTD GGQF+DRG SY T IF H+EEQ ++AEASK L Sbjct: 63 ITFDANKMPYEELLNIYWRQIDPTDVGGQFHDRGQSYETVIFYHNEEQHKKAEASKEELA 122 Query: 135 ASGRFSAPIVTPILPAKPFYRAEEYHQGYHHKNPGHYKRYRQGSGRDAFIESHWKHKEDK 194 GRFS PI T ILPA FY AEEYHQGYH KN Y+ YR+GSGRDAFI+ HW +D Sbjct: 123 KCGRFSKPIATKILPAATFYPAEEYHQGYHKKNTFRYELYRKGSGRDAFIKQHW--PKDN 180 Query: 195 ASLKERLTPLQYEVTQNNATESPFRNEFWDHHGEGIYVDIVSGEPLFSSQDKFDSGCGWP 254 A LKE+L +Q+ VTQ N TE PFRNE+W+H EG+YVDIVSGEPLF+S DKFDSGCGWP Sbjct: 181 AHLKEKLNDMQFYVTQENGTEPPFRNEYWNHKEEGLYVDIVSGEPLFTSIDKFDSGCGWP 240 Query: 255 SFTRPIRDYSVKEKTDLSHLMIRTEVRSKTADSHLGHVFNDGPGPNGLRYCINSAALRFV 314 SFT+P+ SVKEK D+SH M RTEVRSK DSHLGHVF DGPGPNGLRYCINSAALRF+ Sbjct: 241 SFTKPVMSASVKEKMDVSHNMTRTEVRSKEGDSHLGHVFPDGPGPNGLRYCINSAALRFI 300 Query: 315 PKEDLEKEGYGEYRALF 331 PKE+LEKEGYG++ LF Sbjct: 301 PKEELEKEGYGDFLMLF 317 >ref|NP_692655.1| peptide methionine sulfoxide reductase [Oceanobacillus iheyensis HTE831] dbj|BAC13690.1| peptide methionine sulfoxide reductase [Oceanobacillus iheyensis HTE831] Length = 319 Score = 447 bits (1149), Expect = e-124, Method: Compositional matrix adjust. Identities = 202/318 (63%), Positives = 254/318 (79%), Gaps = 1/318 (0%) Query: 15 ISGKTEKATFAGGCFWCMVSPFEELPGIVEVVSGYTGGHTVNPTYEEVCSETTGHVEAVQ 74 +S +TE ATFAGGCFWCMV PF++ PG++++ SGYTGGH NPTYE+VC+ TTGHVEAVQ Sbjct: 1 MSKQTEIATFAGGCFWCMVEPFDQRPGVIDIRSGYTGGHVENPTYEQVCTNTTGHVEAVQ 60 Query: 75 ITFQPDIFPYTKLLELFWQQIDPTDAGGQFYDRGTSYGTAIFTHSEEQRQQAEASKAALQ 134 ITF P+I PY +L+E FWQQIDPTDAGGQF DRG SY TAIF H+EEQ++ AE SK AL Sbjct: 61 ITFDPEIMPYKELVETFWQQIDPTDAGGQFNDRGESYQTAIFYHTEEQKKIAEDSKKALD 120 Query: 135 ASGRFSAPIVTPILPAKPFYRAEEYHQGYHHKNPGHYKRYRQGSGRDAFIESHWKHKEDK 194 S RF PIVTP+LPAKPFY AEE HQ Y+ K HY+ Y++GSGR FI+++W++ DK Sbjct: 121 ESNRFKMPIVTPVLPAKPFYEAEEGHQDYYKKRSFHYRMYKKGSGRQDFIKNNWQNTIDK 180 Query: 195 ASLKERLTPLQYEVTQNNATESPFRNEFWDHHGEGIYVDIVSGEPLFSSQDKFDSGCGWP 254 LKE+LTP+QY VTQ N TE PF NE+W++ EGIYVDI+ G LFSS++++D+GCGWP Sbjct: 181 NELKEKLTPIQYHVTQENGTERPFDNEYWNNTQEGIYVDIIKGNVLFSSKEQYDAGCGWP 240 Query: 255 SFTRPIRDYSVKEKTDLSHLMIRTEVRSKTADSHLGHVFNDGP-GPNGLRYCINSAALRF 313 SFT+P+ Y +++K D +H M+RTE+RSK +DSHLGHVF DGP GLRYC+NSAA+RF Sbjct: 241 SFTKPVDPYQIEDKVDKTHGMVRTEIRSKQSDSHLGHVFEDGPQDKGGLRYCMNSAAMRF 300 Query: 314 VPKEDLEKEGYGEYRALF 331 +PKE +E+EGY +Y LF Sbjct: 301 IPKEKMEEEGYSKYLYLF 318 Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF Posted date: Mar 24, 2004 1:53 AM Number of letters in database: 757,237,578 Number of sequences in database: 2,715,099 Lambda K H 0.317 0.135 0.420 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 2715099 Number of Hits to DB: 555,679,287 Number of extensions: 24492052 Number of successful extensions: 55339 Number of sequences better than 1.0e-05: 1647 Number of HSP's gapped: 53928 Number of HSP's successfully gapped: 1673 Length of query: 334 Length of database: 757,237,578 Length adjustment: 126 Effective length of query: 208 Effective length of database: 415,135,104 Effective search space: 86348101632 Effective search space used: 86348101632 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.6 bits) S2: 126 (53.1 bits)