BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0350.0006.p (369 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF 2,715,099 sequences; 757,237,578 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|ZP_00018971.1| hypothetical protein [Chloroflexus aurantiacus] 106 9e-22 ref|NP_242450.1| BH1584~unknown conserved protein in others [Bac... 103 8e-21 gb|EAI21795.1| unknown [environmental sequence] 94 5e-18 ref|NP_823400.1| putative lipoprotein [Streptomyces avermitilis ... 86 1e-15 ref|NP_973277.1| conserved hypothetical protein [Treponema denti... 80 7e-14 >ref|ZP_00018971.1| hypothetical protein [Chloroflexus aurantiacus] Length = 303 Score = 106 bits (264), Expect = 9e-22, Method: Compositional matrix adjust. Identities = 69/225 (30%), Positives = 108/225 (48%), Gaps = 23/225 (10%) Query: 66 SMASKAEAPAAEGTK--AGG---GNSAVGSTDAAQTSKGTAGFTGSDVVAGLNKKLIYHA 120 M S A PA T AGG G SA+GS A Q + +I +A Sbjct: 48 PMLSGAPVPAQRDTASFAGGVSSGESAIGSEVAVQ------------------RLIIKNA 89 Query: 121 NLTMEVKDYAAAQTEVRNMVTLANGYIIEFSESTSGYERGGTFILKVPASGFSSFLSSLE 180 ++ +EV D AA+ +R G++ SG + T +L+VP F + L E Sbjct: 90 SIALEVADVLAAEQALRQKAEALGGFVASVETYGSGEDLRATIVLRVPVEHFEAVLRDAE 149 Query: 181 KIKNEKLQRQIQGQDVSEEYVDLESRLKAKQLMESQYIEFMKKATKSADLVAFANQLGAI 240 + + L+R + G DV+EEYVDLE+RL+ + ++ ++ + +A D + L I Sbjct: 150 GLASNVLRRSVSGSDVTEEYVDLEARLRNLEATNARLLDLLSRAQNVNDALMVNQALTEI 209 Query: 241 QEEIETIKGRMRYIDQNVSFSTVELRLYQTDESLNITKAKEQGPL 285 QE+IE IKGRM+Y++Q+ + ST+ + L I + PL Sbjct: 210 QEQIERIKGRMQYLEQSAAMSTITVELLPVPPPTPIIEEDAWQPL 254 >ref|NP_242450.1| BH1584~unknown conserved protein in others [Bacillus halodurans] pir||H83847 hypothetical protein BH1584 [imported] - Bacillus halodurans (strain C-125) dbj|BAB05303.1| BH1584~unknown conserved protein in others [Bacillus halodurans] Length = 318 Score = 103 bits (256), Expect = 8e-21, Method: Compositional matrix adjust. Identities = 55/169 (32%), Positives = 101/169 (59%), Gaps = 11/169 (6%) Query: 105 GSDVVAGLNKKLIYHANLTMEVKDYAAAQTEVRNMVTLANGYIIEFSES------TSGYE 158 GS V G+ + +IY ++ +EV+ Y A+ ++ + G+I+E S++ TSGY Sbjct: 76 GSAVPEGMERMIIYTGDMEVEVESYDEAEQQLTSTAQSLGGFIVESSKNEHEDGHTSGY- 134 Query: 159 RGGTFILKVPASGFSSFLSSLEKIKNEKLQRQIQGQDVSEEYVDLESRLKAKQLMESQYI 218 + +VP F+ +++ +Q+ G DV+EEYVDLE+RLK+K++ME + I Sbjct: 135 ----LVARVPQERLDDFVQEVKETSLSIHYQQLSGSDVTEEYVDLEARLKSKRVMEERLI 190 Query: 219 EFMKKATKSADLVAFANQLGAIQEEIETIKGRMRYIDQNVSFSTVELRL 267 F+++A + +L+ +N LG +QEEIE + GRM Y++ V ++++ + + Sbjct: 191 TFLEEADSTENLLKVSNDLGKVQEEIEQLVGRMNYLEDRVRYASMTISI 239 >gb|EAI21795.1| unknown [environmental sequence] Length = 282 Score = 94.0 bits (232), Expect = 5e-18, Method: Compositional matrix adjust. Identities = 49/155 (31%), Positives = 88/155 (56%), Gaps = 1/155 (0%) Query: 113 NKKLIYHANLTMEVKDYAAAQTEVRNMVTLANGYIIEFSESTSGYERGGTFILKVPASGF 172 N IY ++T+EV A E+++++TL GYI + + Y + ++VP F Sbjct: 78 NSTEIYTGSITIEVNSVEARLNEIKDLITLKQGYIEYLNSYGTDYNQNANLTVRVPQDRF 137 Query: 173 SSFLSSLEKIKNEKLQRQIQGQDVSEEYVDLESRLKAKQLMESQYIEFMKKATKSADLVA 232 S +S LE + L + I +DVSE+ +DL +RLK+ E+ ++ + K+ +D+VA Sbjct: 138 ESVMSDLELL-GIVLNKSIGSEDVSEQLIDLNARLKSYIREETNLLKLLDKSQTISDIVA 196 Query: 233 FANQLGAIQEEIETIKGRMRYIDQNVSFSTVELRL 267 +L I+ EIE+++GR++Y D ++ ST+ + L Sbjct: 197 IERELSRIRSEIESLQGRLKYYDGKITMSTININL 231 >ref|NP_823400.1| putative lipoprotein [Streptomyces avermitilis MA-4680] dbj|BAC69935.1| putative lipoprotein [Streptomyces avermitilis MA-4680] Length = 324 Score = 86.3 bits (212), Expect = 1e-15, Method: Compositional matrix adjust. Identities = 70/263 (26%), Positives = 123/263 (46%), Gaps = 37/263 (14%) Query: 48 ASVDGGAAQNASADVAEQSMASKAEAPAAEGTKAGGGNSAVGSTDAAQTSKGTAGFTGSD 107 A+ DGG + + + A + A++ +A G KA G S Sbjct: 29 AADDGGGSSSDAKAAAPGAQKGAADSGSASGAKASGAPKLTASA---------------- 72 Query: 108 VVAGLNKKLIYHANLTMEVKDYAAAQTEVRNMVTLANGYIIEFSESTS----GYERGGTF 163 +I A+LT++VKD A + R V A G+I +ESTS G+ER Sbjct: 73 --------IIRTASLTVQVKDVPKALDDARTTVETAGGFI--GNESTSRDARGHER-TRV 121 Query: 164 ILKVPASGFSSFLSSLEKIKNEKLQRQIQGQDVSEEYVDLESRLKAKQLMESQYIEFMKK 223 +L+VP+ + L LE + + R + +DV+++ VD+ESR+K+++ ++ E M K Sbjct: 122 VLRVPSEKYDQVLGDLEGT-GKLIDRSRKAEDVTDQVVDVESRIKSQRASVARVRELMDK 180 Query: 224 ATKSADLVAFANQLGAIQEEIETIKGRMRYIDQNVSFSTVELRLYQTDESLNITKAKEQG 283 ATK +D+V+ +L + + ++E + + + S +T+ L L +T K ++ G Sbjct: 181 ATKLSDVVSLEGELSSREADLEALLAQQASLKDRTSLATITLSLSETPVKKAAAKDEDPG 240 Query: 284 PLMNRASEALQGSLHALSVMFQW 306 L +AL G H + +W Sbjct: 241 FL-----DALAGGWHVFVTLLRW 258 >ref|NP_973277.1| conserved hypothetical protein [Treponema denticola ATCC 35405] gb|AAS13196.1| conserved hypothetical protein [Treponema denticola ATCC 35405] Length = 294 Score = 80.1 bits (196), Expect = 7e-14, Method: Compositional matrix adjust. Identities = 47/163 (28%), Positives = 88/163 (53%), Gaps = 8/163 (4%) Query: 111 GLNKKLIYHANLTMEVKDYAAAQTEVRNMVTLANGYIIEFSESTSGYERGGTFILKVPAS 170 + +KLI + E +D + + N+VT YI + E T +++P Sbjct: 71 NIERKLIKTGFIEFETEDIKKTRETIENLVTKYQAYISQEDEQHFQSNIRQTISIRIPKE 130 Query: 171 GFSSFLSSL----EKIKNEKLQRQIQGQDVSEEYVDLESRLKAKQLMESQYIEFMKKATK 226 F + L+ L +K+ N + I +DV+EE+VD +RLK K+ E Y++ + +A Sbjct: 131 NFDNLLNELTIGIKKLDN----KNITVEDVTEEFVDGLARLKVKKETEQTYLKILSQAKT 186 Query: 227 SADLVAFANQLGAIQEEIETIKGRMRYIDQNVSFSTVELRLYQ 269 D++ NQ+ ++ +IE I+GR+RY+ ++V++ST+ + +YQ Sbjct: 187 VKDILEVQNQIQDLRSDIEAIEGRLRYLQKSVNYSTLNISMYQ 229 Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF Posted date: Mar 24, 2004 1:53 AM Number of letters in database: 757,237,578 Number of sequences in database: 2,715,099 Lambda K H 0.312 0.125 0.331 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 2715099 Number of Hits to DB: 358,370,842 Number of extensions: 12743767 Number of successful extensions: 55300 Number of sequences better than 1.0e-05: 14 Number of HSP's gapped: 55311 Number of HSP's successfully gapped: 14 Length of query: 369 Length of database: 757,237,578 Length adjustment: 127 Effective length of query: 242 Effective length of database: 412,420,005 Effective search space: 99805641210 Effective search space used: 99805641210 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.2 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 42 (21.9 bits) S2: 127 (53.5 bits)