BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0349.0020.p (126 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF 2,715,099 sequences; 757,237,578 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|NP_390781.1| ytcD [Bacillus subtilis] >gi|6226499|sp|O34533|... 157 6e-38 ref|NP_981501.1| conserved hypothetical protein [Bacillus cereus... 149 2e-35 ref|NP_244752.1| BH3884~unknown conserved protein [Bacillus halo... 149 3e-35 ref|NP_834727.1| Transcriptional regulator, MarR family [Bacillu... 147 7e-35 ref|NP_653530.1| DUF24, Protein of unknown function DUF24 [Bacil... 146 1e-34 >ref|NP_390781.1| ytcD [Bacillus subtilis] sp|O34533|YTCD_BACSU Hypothetical protein ytcD pir||B69989 hypothetical protein ytcD - Bacillus subtilis gb|AAC00354.1| YtcD [Bacillus subtilis] emb|CAB14863.1| ytcD [Bacillus subtilis subsp. subtilis str. 168] Length = 126 Score = 157 bits (397), Expect = 6e-38, Method: Compositional matrix adjust. Identities = 76/113 (67%), Positives = 87/113 (76%) Query: 10 KTYNTAVEATLEVIGGKWKPVILFFLTFGKKRNGEFISLMPVITQKVLTQQLRELEEDGV 69 K YN +VEATLEVIGGKWK VIL LT GKKR E LMP ITQK+LTQQLRELE DGV Sbjct: 4 KKYNISVEATLEVIGGKWKCVILCHLTHGKKRTSELKRLMPNITQKMLTQQLRELEADGV 63 Query: 70 IKRTVYNEVPPRVEYELTDYGWSLKEILHLMCRWGDAHIERVYGDQAAVLAQP 122 I R VYN+VPP+VEYEL++YG SL+ IL ++C WG HI RVYGD +VL + Sbjct: 64 INRIVYNQVPPKVEYELSEYGRSLEGILDMLCAWGANHINRVYGDTFSVLEES 116 >ref|NP_981501.1| conserved hypothetical protein [Bacillus cereus ATCC 10987] gb|AAS44109.1| conserved hypothetical protein [Bacillus cereus ATCC 10987] Length = 114 Score = 149 bits (376), Expect = 2e-35, Method: Compositional matrix adjust. Identities = 72/115 (62%), Positives = 88/115 (76%), Gaps = 1/115 (0%) Query: 9 IKTYNTAVEATLEVIGGKWKPVILFFLTFGKKRNGEFISLMPVITQKVLTQQLRELEEDG 68 +K YN VEATLEVIGGKWK VIL LT G KR E LMP ITQK+LTQQLRELE+DG Sbjct: 1 MKKYNIPVEATLEVIGGKWKVVILCHLTKGTKRTSELKRLMPGITQKMLTQQLRELEDDG 60 Query: 69 VIKRTVYNEVPPRVEYELTDYGWSLKEILHLMCRWGDAHIERVYGDQAAVLAQPQ 123 VI+R VYN+VPP+VEY LTDYGWSL+ IL +C WG+ H+E+ G + ++A+ + Sbjct: 61 VIQRKVYNQVPPKVEYSLTDYGWSLESILDSLCTWGECHLEK-EGKTSMLIAESE 114 >ref|NP_244752.1| BH3884~unknown conserved protein [Bacillus halodurans] pir||D84135 hypothetical protein BH3884 [imported] - Bacillus halodurans (strain C-125) dbj|BAB07603.1| BH3884~unknown conserved protein [Bacillus halodurans] Length = 128 Score = 149 bits (375), Expect = 3e-35, Method: Compositional matrix adjust. Identities = 69/115 (60%), Positives = 86/115 (74%) Query: 10 KTYNTAVEATLEVIGGKWKPVILFFLTFGKKRNGEFISLMPVITQKVLTQQLRELEEDGV 69 K Y VEA LEV+GGKWKP+I++ L G+KR E LMP ITQK+LT QLR LE+D + Sbjct: 11 KKYQVGVEAALEVMGGKWKPLIIYHLMTGRKRTSELRRLMPAITQKMLTTQLRGLEKDEI 70 Query: 70 IKRTVYNEVPPRVEYELTDYGWSLKEILHLMCRWGDAHIERVYGDQAAVLAQPQT 124 I R VYNEVPP+VEYELT YGW LK L L+C WG+ H+E+VYGD++ VL + Q+ Sbjct: 71 ITRKVYNEVPPKVEYELTPYGWGLKPALDLLCYWGEDHLEKVYGDKSKVLEEFQS 125 >ref|NP_834727.1| Transcriptional regulator, MarR family [Bacillus cereus ATCC 14579] gb|AAP11928.1| Transcriptional regulator, MarR family [Bacillus cereus ATCC 14579] Length = 114 Score = 147 bits (371), Expect = 7e-35, Method: Compositional matrix adjust. Identities = 71/113 (62%), Positives = 87/113 (76%), Gaps = 1/113 (0%) Query: 9 IKTYNTAVEATLEVIGGKWKPVILFFLTFGKKRNGEFISLMPVITQKVLTQQLRELEEDG 68 +K YN VEATLEVIGGKWK VIL LT G KR E MP ITQK+LTQQLRELE+DG Sbjct: 1 MKKYNIPVEATLEVIGGKWKVVILCHLTKGTKRTSELKRSMPGITQKMLTQQLRELEDDG 60 Query: 69 VIKRTVYNEVPPRVEYELTDYGWSLKEILHLMCRWGDAHIERVYGDQAAVLAQ 121 VI+R VYN+VPP+VEY LTDYGWSL+ IL +C WG+ H+E+ G+ + ++A+ Sbjct: 61 VIQRKVYNQVPPKVEYSLTDYGWSLESILDSLCSWGECHLEK-EGNTSMLIAE 112 >ref|NP_653530.1| DUF24, Protein of unknown function DUF24 [Bacillus anthracis A2012] ref|NP_847487.1| conserved hypothetical protein [Bacillus anthracis str. Ames] gb|AAP28973.1| conserved hypothetical protein [Bacillus anthracis str. Ames] Length = 114 Score = 146 bits (369), Expect = 1e-34, Method: Compositional matrix adjust. Identities = 69/102 (67%), Positives = 80/102 (78%) Query: 9 IKTYNTAVEATLEVIGGKWKPVILFFLTFGKKRNGEFISLMPVITQKVLTQQLRELEEDG 68 +K YN VEATLEVIGGKWK VIL LT G KR E MP ITQK+LTQQLRELE+DG Sbjct: 1 MKQYNIPVEATLEVIGGKWKVVILCHLTKGTKRTSELKRSMPGITQKMLTQQLRELEDDG 60 Query: 69 VIKRTVYNEVPPRVEYELTDYGWSLKEILHLMCRWGDAHIER 110 VI+R VYN+VPP+VEY LTDYGWSL+ IL +C WG+ H+E+ Sbjct: 61 VIQRKVYNQVPPKVEYSLTDYGWSLESILDSLCSWGECHLEK 102 Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF Posted date: Mar 24, 2004 1:53 AM Number of letters in database: 757,237,578 Number of sequences in database: 2,715,099 Lambda K H 0.320 0.137 0.416 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 2715099 Number of Hits to DB: 191,428,899 Number of extensions: 7094989 Number of successful extensions: 17041 Number of sequences better than 1.0e-05: 284 Number of HSP's gapped: 17007 Number of HSP's successfully gapped: 284 Length of query: 126 Length of database: 757,237,578 Length adjustment: 89 Effective length of query: 37 Effective length of database: 515,593,767 Effective search space: 19076969379 Effective search space used: 19076969379 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 120 (50.8 bits)