BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0349.0014.p
         (77 letters)

Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF 
           2,715,099 sequences; 757,237,578 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|ZP_00060351.1| COG0564: Pseudouridylate synthases, 23S RNA-s...    77   9e-14
ref|ZP_00099063.1| COG0564: Pseudouridylate synthases, 23S RNA-s...    71   7e-12
gb|EAH13683.1| unknown [environmental sequence]                        58   5e-08
gb|EAJ04590.1| unknown [environmental sequence]                        57   2e-07
gb|EAK61481.1| unknown [environmental sequence]                        55   5e-07

>ref|ZP_00060351.1| COG0564: Pseudouridylate synthases, 23S RNA-specific [Clostridium
          thermocellum ATCC 27405]
          Length = 243

 Score = 77.4 bits (189), Expect = 9e-14,   Method: Compositional matrix adjust.
 Identities = 33/53 (62%), Positives = 46/53 (86%)

Query: 19 FEILYEDNHLLGIVKPVNIPVQEDATGDPDLLSLLKEDVKERFHKPGNVYMGL 71
           +I++EDNHLL + KPVNIP Q+D + D D+L+LLKED+K+R++KPGNVY+GL
Sbjct: 21 IDIIFEDNHLLVVKKPVNIPTQKDKSNDSDMLTLLKEDIKKRYNKPGNVYLGL 73


>ref|ZP_00099063.1| COG0564: Pseudouridylate synthases, 23S RNA-specific
          [Desulfitobacterium hafniense]
          Length = 241

 Score = 71.2 bits (173), Expect = 7e-12,   Method: Compositional matrix adjust.
 Identities = 33/51 (64%), Positives = 44/51 (86%)

Query: 21 ILYEDNHLLGIVKPVNIPVQEDATGDPDLLSLLKEDVKERFHKPGNVYMGL 71
          I+YEDNHLL + KP NI  Q+D+TGD D+L+LLK+D+K R++KPGNVY+GL
Sbjct: 14 IVYEDNHLLVVDKPPNILSQKDSTGDMDILTLLKQDIKIRYNKPGNVYLGL 64


>gb|EAH13683.1| unknown [environmental sequence]
          Length = 167

 Score = 58.2 bits (139), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 30/52 (57%), Positives = 38/52 (73%)

Query: 20 EILYEDNHLLGIVKPVNIPVQEDATGDPDLLSLLKEDVKERFHKPGNVYMGL 71
          +I+YEDNHLL I K V   VQ D TGD  LL L+K+ +K+R  KPGNV++GL
Sbjct: 4  QIVYEDNHLLVINKKVGQLVQGDKTGDDSLLELIKDFIKKRDDKPGNVFLGL 55


>gb|EAJ04590.1| unknown [environmental sequence]
          Length = 228

 Score = 56.6 bits (135), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 26/52 (50%), Positives = 39/52 (75%)

Query: 20 EILYEDNHLLGIVKPVNIPVQEDATGDPDLLSLLKEDVKERFHKPGNVYMGL 71
          EILYEDNHL+ I K   + VQ D TGD  L+ ++K+ +K++++K GNV++GL
Sbjct: 7  EILYEDNHLIIINKKTGVLVQGDITGDLSLIEIVKDYLKKKYNKKGNVFLGL 58


>gb|EAK61481.1| unknown [environmental sequence]
          Length = 229

 Score = 55.1 bits (131), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 27/52 (51%), Positives = 37/52 (71%)

Query: 20 EILYEDNHLLGIVKPVNIPVQEDATGDPDLLSLLKEDVKERFHKPGNVYMGL 71
          EIL+EDNHL+ I K   I VQ D TGD  L+ + K+ +K +++K GNVY+GL
Sbjct: 5  EILFEDNHLIIINKKPGILVQGDITGDISLIEVTKDYIKNKYNKKGNVYLGL 56


  Database: All non-redundant GenBank CDS
  translations+PDB+SwissProt+PIR+PRF
    Posted date:  Mar 24, 2004  1:53 AM
  Number of letters in database: 757,237,578
  Number of sequences in database:  2,715,099
  
Lambda     K      H
   0.320    0.145    0.427 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 2715099
Number of Hits to DB: 94,637,628
Number of extensions: 3115396
Number of successful extensions: 6817
Number of sequences better than 1.0e-05: 12
Number of HSP's gapped: 6818
Number of HSP's successfully gapped: 12
Length of query: 77
Length of database: 757,237,578
Length adjustment: 47
Effective length of query: 30
Effective length of database: 629,627,925
Effective search space: 18888837750
Effective search space used: 18888837750
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 120 (50.8 bits)