BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0349.0010.p (805 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF 2,715,099 sequences; 757,237,578 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|NP_243005.1| DNA topoisomerase IV subunit A [Bacillus halodu... 777 0.0 ref|NP_389692.1| DNA gyrase-like protein (subunit A) [Bacillus s... 776 0.0 ref|NP_657505.1| DNA_topoisoIV, DNA gyrase/topoisomerase IV, sub... 776 0.0 ref|NP_833328.1| Topoisomerase IV subunit A [Bacillus cereus ATC... 776 0.0 gb|AAB81615.1| ParC [Bacillus subtilis] 776 0.0 >ref|NP_243005.1| DNA topoisomerase IV subunit A [Bacillus halodurans] pir||C83917 DNA topoisomerase IV subunit A BH2139 [imported] - Bacillus halodurans (strain C-125) dbj|BAB05858.1| DNA topoisomerase IV subunit A [Bacillus halodurans] Length = 816 Score = 777 bits (2006), Expect = 0.0, Method: Compositional matrix adjust. Identities = 393/807 (48%), Positives = 571/807 (70%), Gaps = 19/807 (2%) Query: 5 LEEVVGDRFGRYSKYIIQDRAIPDVRDGLKPVQRRILYAMYDSGNTPDKPYRKSAKTVGD 64 LEEV+GDRFGRYSKYIIQ+RA+PD RDGLKPVQRRILYAMY GNT DKP+RKSAKTVG+ Sbjct: 12 LEEVIGDRFGRYSKYIIQERALPDARDGLKPVQRRILYAMYRDGNTADKPFRKSAKTVGN 71 Query: 65 VMGNYHPHGDSSIYEGMVRMAQPWKMGHVLIDGHGNWGSMDDDPAAAMRYTEARLSPIAM 124 V+GNYHPHGDSS+Y+ M+RM+Q WK+ ++L+D HGN GS+D DP AAMRYTEARLS IA Sbjct: 72 VIGNYHPHGDSSVYDAMIRMSQEWKVRNILVDMHGNNGSIDGDPPAAMRYTEARLSKIAA 131 Query: 125 EMMRDIEKRTVLFKDNFDNTAKEPVVVPSRYPNLLVNGTSGISAGFATEIPPHNLREVID 184 E++RDI+K TV + NFD++ +EPVV+P+++PNLLVNG++GIS+G+AT+IPPH+L EVID Sbjct: 132 ELLRDIDKETVDYIPNFDDSEQEPVVLPAKFPNLLVNGSTGISSGYATDIPPHHLGEVID 191 Query: 185 ACIAVMQKPDIALEDIMTFIKGPDFPXXXXXXXXXXXXDAYRTGKGRIYLRSKTEIENLR 244 I M+ P++ L+++M IKGPDFP AY TGKG++ +R K EIE+LR Sbjct: 192 GVIMQMENPNVTLDELMQVIKGPDFPTGGIVQGIEGIRQAYSTGKGKVVVRGKAEIEDLR 251 Query: 245 GGKQQIVITEVPFQIVKSRLVTSMENIRLEKKIEGIAEVRDESGRDGLRIVVELKKEADA 304 GGKQQIVITE+P+++VK+ LV M+ IR +KK++GIAEVRD++ R GLRIVVELKK+ADA Sbjct: 252 GGKQQIVITEIPYEVVKANLVKKMDEIRFDKKVDGIAEVRDDTDRTGLRIVVELKKDADA 311 Query: 305 QGILAYLLKKTDLQVTYNFNMVAIVNKSPQQLGLKAILEAYIAHQREVVTHRTQFDLEKA 364 GIL YL K TDLQ+TYNFNMVAI NK+P+ +GLK++++AYI HQ++V+ R +DL+KA Sbjct: 312 NGILQYLFKNTDLQITYNFNMVAIHNKTPRLMGLKSLIQAYIDHQKDVIIRRATYDLQKA 371 Query: 365 EDRAHVLEGLVKALNILDEVIAAIKASKNRQDAQNNLVWMFGFSERQADSILTLQLYRLT 424 +DR H+++GL+KA++ILD+VI I+ASK++++A++NL+ F F+E QA++I+TLQLYRLT Sbjct: 372 KDRQHIVQGLMKAISILDDVIQTIRASKDKKNAKDNLIAQFDFTEAQAEAIVTLQLYRLT 431 Query: 425 NLEIHSLQKELDEMNARIAVLKGILESDKKLIAVIRKELIEIRDKYGIDRRSLIQGXXXX 484 N +I +L++E E+ RI L+ IL S+KKLI V++KEL+ I+ ++ +RR++I+ Sbjct: 432 NTDITTLEEEAAELERRIHELEAILASEKKLIGVVKKELLAIKKQFTDERRTIIKKEIEE 491 Query: 485 XXXXXXXXXNAEDVLVALSADGYIKRTGMLSFTRSGGERNASGVKEGDHIVRLMDLNTRD 544 +EDV+V ++ +GY+KRT + S+ S GE G+KEGD+++ ++NT+D Sbjct: 492 IKITMDVLVASEDVMVTVTKEGYVKRTSLRSYAASNGE--LPGMKEGDYLLGRYEMNTQD 549 Query: 545 SLLVFTRKGQYFLLPVHQIPEFKWKEPGTAIVNVIGLAKGDGIASILPVGNMDDPGASLV 604 +LL+FT+KG Y LPVHQ+P+ +WK+ G + N++ + K D I + L V + SL+ Sbjct: 550 TLLLFTKKGNYLYLPVHQLPDIRWKDNGQHVANLVTVDKDDDILTTLAVKEFSEE-ESLL 608 Query: 605 FVTRKGQVKRTELKEYSTSR-SGAVAACKVAEGDEVLTVALSSGDKEIVLVTREGMSIRF 663 F+TR+G KR++L Y R S + A K+ + DEV++V +SG++E+ + T G + F Sbjct: 609 FITRQGMAKRSQLSLYKAQRFSKPLMALKLKDDDEVVSVMRTSGNEEVFIATSFGYGLWF 668 Query: 664 RENEVNPMGRVASGVRGIQLREGDEVV--SCFWVNEDEGEILAVTEIGYAKRTLLLDYPA 721 ENE++ +G+ A+GV+GI L+ D VV + F +N D E L VT G KR + ++ Sbjct: 669 SENEISQVGQRAAGVKGINLKNDDAVVDATTFTLN-DRVEFLVVTHRGGVKRISITEFDK 727 Query: 722 QSRGGKGMPTF-EFKEGKRVRPNGSRI---SGAFYCREPLELVAITREGATHSFSSESAP 777 +R +G+ E K+ RI S F+ + T +G + + S Sbjct: 728 STRAKRGLVMLRELKKNPHHIVACKRISDGSDTFFIK--------TEDGTIVTVAPSSFR 779 Query: 778 LSERRSIGKQLVSVEKKDEIISLFPAI 804 S+R S G ++ +K + +++ + Sbjct: 780 RSDRYSNGSFVLDQDKTGVVTNVWKEV 806 >ref|NP_389692.1| DNA gyrase-like protein (subunit A) [Bacillus subtilis] sp|Q45066|PARC_BACSU Topoisomerase IV subunit A pir||B69637 DNA gyrase-like protein (subunit A) grlA - Bacillus subtilis emb|CAA97607.1| GrlA [Bacillus subtilis] emb|CAB13693.1| subunit of DNA topoisomerase IV [Bacillus subtilis subsp. subtilis str. 168] Length = 806 Score = 776 bits (2005), Expect = 0.0, Method: Compositional matrix adjust. Identities = 392/798 (49%), Positives = 552/798 (69%), Gaps = 10/798 (1%) Query: 5 LEEVVGDRFGRYSKYIIQDRAIPDVRDGLKPVQRRILYAMYDSGNTPDKPYRKSAKTVGD 64 LEEV+GDRFGRYSKYIIQDRA+PD RDGLKPVQRRILYAM+ GNT DK +RK+AKTVG+ Sbjct: 12 LEEVIGDRFGRYSKYIIQDRALPDARDGLKPVQRRILYAMHTDGNTFDKNFRKAAKTVGN 71 Query: 65 VMGNYHPHGDSSIYEGMVRMAQPWKMGHVLIDGHGNWGSMDDDPAAAMRYTEARLSPIAM 124 V+GNYHPHGDSS+YE MVRM+Q WK+ +VLI+ HGN GS+D DP AAMRYTEARLSPIA Sbjct: 72 VIGNYHPHGDSSVYEAMVRMSQDWKVRNVLIEMHGNNGSIDGDPPAAMRYTEARLSPIAS 131 Query: 125 EMMRDIEKRTVLFKDNFDNTAKEPVVVPSRYPNLLVNGTSGISAGFATEIPPHNLREVID 184 E++RDI+K TV F NFD+T+KEPVV+P+ +PNLLVNG++GISAG+AT+IPPH+L EVID Sbjct: 132 ELLRDIDKNTVEFVPNFDDTSKEPVVLPAMFPNLLVNGSTGISAGYATDIPPHHLGEVID 191 Query: 185 ACIAVMQKPDIALEDIMTFIKGPDFPXXXXXXXXXXXXDAYRTGKGRIYLRSKTEIENLR 244 A I +Q P +++++M IKGPDFP AY TGKG+I +R K EIE +R Sbjct: 192 AVIKRIQMPSCSVDELMELIKGPDFPTGGIIQGVDGIRKAYETGKGKIIIRGKAEIETIR 251 Query: 245 GGKQQIVITEVPFQIVKSRLVTSMENIRLEKKIEGIAEVRDESGRDGLRIVVELKKEADA 304 GG++QIVITE+PF++ K+ LV M+ R++KK+EGI+EVRDE+ R GLR+V+ELKKEADA Sbjct: 252 GGREQIVITEIPFEVNKANLVKKMDEFRIDKKVEGISEVRDETDRTGLRVVIELKKEADA 311 Query: 305 QGILAYLLKKTDLQVTYNFNMVAIVNKSPQQLGLKAILEAYIAHQREVVTHRTQFDLEKA 364 +GIL +L K TDLQ+TYNFNMVAI N+ P + L +IL+AYI HQ+EVVT+R+ ++L+KA Sbjct: 312 KGILNFLYKNTDLQITYNFNMVAIHNRRPMLMSLPSILDAYIGHQKEVVTNRSVYELQKA 371 Query: 365 EDRAHVLEGLVKALNILDEVIAAIKASKNRQDAQNNLVWMFGFSERQADSILTLQLYRLT 424 +DR H++EGL+KAL+ILDEVIA I++S +++DA+NNL+ + F+E QA++I++LQLYRLT Sbjct: 372 KDRHHIVEGLMKALSILDEVIATIRSSSDKRDAKNNLIAKYEFTEPQAEAIVSLQLYRLT 431 Query: 425 NLEIHSLQKELDEMNARIAVLKGILESDKKLIAVIRKELIEIRDKYGIDRRSLIQGXXXX 484 N +I +L++E +E+ +I L+ IL +DKKL+ VI L ++ KY RRS+I+ Sbjct: 432 NTDITALKEEAEELGKKIEELESILSNDKKLLKVITNSLKALKKKYADTRRSVIEEKIEE 491 Query: 485 XXXXXXXXXNAEDVLVALSADGYIKRTGMLSFTRSGGERNASGVKEGDHIVRLMDLNTRD 544 +EDV V ++ DGY+KRT SF S G+ G+K+ D ++ ++NT D Sbjct: 492 IKINLEVMVASEDVYVTVTKDGYLKRTSQRSFAASNGQ--DFGMKDTDRMLHQFEMNTTD 549 Query: 545 SLLVFTRKGQYFLLPVHQIPEFKWKEPGTAIVNVIGLAKGDGIASILPVGNMDDPGASLV 604 LL+FT KG Y PVHQ+P+ +WK+ G N+I + + + I +P+ DP A L+ Sbjct: 550 VLLLFTNKGSYIYCPVHQLPDIRWKDMGQHFSNLITIDRDETIVKAIPIKEF-DPSAYLL 608 Query: 605 FVTRKGQVKRTELKEYSTSR-SGAVAACKVAEGDEVLTVALSSGDKEIVLVTREGMSIRF 663 F T+ G VK+TEL Y R S A+ A + DE++ V +++G+ +I + T G + F Sbjct: 609 FFTKNGMVKKTELTHYKAQRYSKALVALNLKGEDELIDVHVTNGESQIFMATHLGYGLWF 668 Query: 664 RENEVNPMGRVASGVRGIQLREGDEVVSCFWVNEDEGEILAVTEIGYAKRTLLLDYPAQS 723 E+EVN +G A+GV+GI L+E D VVS + + + I+ T+ G KR L ++ S Sbjct: 669 GEDEVNVVGARAAGVKGINLKEDDFVVSGEILQQSDS-IVLFTQRGAVKRMSLSEFEKTS 727 Query: 724 RGGKGMPTFEFKEGKRVRPNGSRISGAFYCREPLELVAITREGATHSFSSESAPLSERRS 783 R +G+ + ++ N R+ F C L+A T +G ++ ++R S Sbjct: 728 RAKRGVVML-----RELKKNPHRVVALFACGLEQRLMAETEKGDRKELQTKELRTNDRYS 782 Query: 784 IGKQLVSVEKKDEIISLF 801 G E+ ++ +++ Sbjct: 783 NGSFFFDEEESGKVTAVW 800 >ref|NP_657505.1| DNA_topoisoIV, DNA gyrase/topoisomerase IV, subunit A [Bacillus anthracis A2012] ref|NP_845921.1| DNA topoisomerase IV, A subunit [Bacillus anthracis str. Ames] gb|AAP27407.1| DNA topoisomerase IV, A subunit [Bacillus anthracis str. Ames] Length = 807 Score = 776 bits (2005), Expect = 0.0, Method: Compositional matrix adjust. Identities = 391/798 (48%), Positives = 553/798 (69%), Gaps = 8/798 (1%) Query: 5 LEEVVGDRFGRYSKYIIQDRAIPDVRDGLKPVQRRILYAMYDSGNTPDKPYRKSAKTVGD 64 LE+V+GDRF RYSKYIIQDRA+PD RDGLKPVQRRILY+MY GN DK +RKSAKTVG+ Sbjct: 11 LEDVLGDRFARYSKYIIQDRALPDARDGLKPVQRRILYSMYVEGNVHDKAFRKSAKTVGN 70 Query: 65 VMGNYHPHGDSSIYEGMVRMAQPWKMGHVLIDGHGNWGSMDDDPAAAMRYTEARLSPIAM 124 V+GNYHPHGDSS+YE MVR++Q WK+ +VL++ HGN GS+D DPAAAMRYTEARLSPIA Sbjct: 71 VIGNYHPHGDSSVYEAMVRLSQTWKVRNVLVEMHGNNGSVDGDPAAAMRYTEARLSPIAS 130 Query: 125 EMMRDIEKRTVLFKDNFDNTAKEPVVVPSRYPNLLVNGTSGISAGFATEIPPHNLREVID 184 E++RD++K TV F NFD+T++EPVV+P+ +PNLLVNG++GISAG+ATEIPPH+L EVID Sbjct: 131 ELLRDLDKETVEFVSNFDDTSEEPVVLPAAFPNLLVNGSTGISAGYATEIPPHHLGEVID 190 Query: 185 ACIAVMQKPDIALEDIMTFIKGPDFPXXXXXXXXXXXXDAYRTGKGRIYLRSKTEIENLR 244 A + + KP+ ++D++T +KGPDFP AY TGKG+I +R K E+E +R Sbjct: 191 ATMMRIDKPNSTVDDLLTVMKGPDFPTGGIIQGIDGIKKAYETGKGKIIIRGKAEVETVR 250 Query: 245 GGKQQIVITEVPFQIVKSRLVTSMENIRLEKKIEGIAEVRDESGRDGLRIVVELKKEADA 304 GGKQQIVITE+P+++ K+ LV M+ +RL+KK++GIAEVRDE+ R GLRIVVELKKEA++ Sbjct: 251 GGKQQIVITEIPYEVNKANLVKKMDELRLDKKLDGIAEVRDETDRTGLRIVVELKKEANS 310 Query: 305 QGILAYLLKKTDLQVTYNFNMVAIVNKSPQQLGLKAILEAYIAHQREVVTHRTQFDLEKA 364 +GIL YL K TDLQ+ YNFNMVAI N+ P + L IL+AYI HQ+EVVT R+Q++L KA Sbjct: 311 EGILNYLYKNTDLQIPYNFNMVAINNRRPTLMTLPKILDAYIGHQKEVVTRRSQYELRKA 370 Query: 365 EDRAHVLEGLVKALNILDEVIAAIKASKNRQDAQNNLVWMFGFSERQADSILTLQLYRLT 424 E+R H++EGL KAL+ILD+VI I+ASK++++A++NL FGF+E QA++I++LQLYRLT Sbjct: 371 ENRQHIVEGLKKALSILDQVIETIRASKDKRNAKDNLSAKFGFTEAQAEAIVSLQLYRLT 430 Query: 425 NLEIHSLQKELDEMNARIAVLKGILESDKKLIAVIRKELIEIRDKYGIDRRSLIQGXXXX 484 N +I +LQ+E DE+N +I L+ IL+S+K+L+ VI+ +L ++ Y DRR++I+ Sbjct: 431 NTDITALQQEADELNKKIIELQAILQSEKRLLQVIKTDLKRVKKTYSDDRRAIIEDQIEE 490 Query: 485 XXXXXXXXXNAEDVLVALSADGYIKRTGMLSFTRSGGERNASGVKEGDHIVRLMDLNTRD 544 EDV+V ++ +GY+KRTG S S G+ G+KEGD ++ D NT + Sbjct: 491 IKIDVEVMIPQEDVIVTVTKEGYVKRTGWRSHNASNGK--DFGMKEGDILLERFDTNTTE 548 Query: 545 SLLVFTRKGQYFLLPVHQIPEFKWKEPGTAIVNVIGLAKGDGIASILPVGNMDDPGASLV 604 ++L+FT KG Y LPV+++P+ +WK+ G + N++ L + + I V N ++ +V Sbjct: 549 TVLLFTNKGNYIYLPVYEMPDIRWKDLGQHVANIVSLDRDETIIWATVVPNFEEEKRFIV 608 Query: 605 FVTRKGQVKRTELKEYSTSR-SGAVAACKVAEGDEVLTVALSSGDKEIVLVTREGMSIRF 663 FVT+ G +K+TEL +Y R S A A + + DEV+ + + G +IVL T ++ F Sbjct: 609 FVTKNGMIKKTELNQYKVQRYSRAFVAVNLKKDDEVVDIFATDGTSDIVLATHGAYALIF 668 Query: 664 RENEVNPMGRVASGVRGIQLREGDEVVSCFWVNEDEGEILAVTEIGYAKRTLLLDYPAQS 723 E+EV+P+G A+GV+ I L+E D V S +N D+ +++ VT+ G KR + + Sbjct: 669 HEDEVSPVGVRAAGVKAINLKEDDYVASGKPLNADKDQLILVTQRGAVKRLKASEIEKST 728 Query: 724 RGGKGMPTFEFKEGKRVRPNGSRISGAFYCREPLELVAITREGATHSFSSESAPLSERRS 783 R +G+ FKE KR N RI G R+ + T + ++ +R S Sbjct: 729 RAKRGLVI--FKELKR---NPYRIVGIEIVRDDELVYMKTEKHIVEEIDPKAYRNKDRYS 783 Query: 784 IGKQLVSVEKKDEIISLF 801 G ++ V E+I + Sbjct: 784 NGSLVLDVNDTGEVIETW 801 >ref|NP_833328.1| Topoisomerase IV subunit A [Bacillus cereus ATCC 14579] gb|AAP10529.1| Topoisomerase IV subunit A [Bacillus cereus ATCC 14579] Length = 807 Score = 776 bits (2004), Expect = 0.0, Method: Compositional matrix adjust. Identities = 390/798 (48%), Positives = 552/798 (69%), Gaps = 8/798 (1%) Query: 5 LEEVVGDRFGRYSKYIIQDRAIPDVRDGLKPVQRRILYAMYDSGNTPDKPYRKSAKTVGD 64 LE+V+GDRF RYSKYIIQDRA+PD RDGLKPVQRRILY+MY GN DK +RKSAKTVG+ Sbjct: 11 LEDVLGDRFARYSKYIIQDRALPDARDGLKPVQRRILYSMYVEGNVHDKAFRKSAKTVGN 70 Query: 65 VMGNYHPHGDSSIYEGMVRMAQPWKMGHVLIDGHGNWGSMDDDPAAAMRYTEARLSPIAM 124 V+GNYHPHGDSS+YE MVR++Q WK+ +VL++ HGN GS+D DPAAAMRYTEARLSPIA Sbjct: 71 VIGNYHPHGDSSVYEAMVRLSQTWKVRNVLVEMHGNNGSVDGDPAAAMRYTEARLSPIAS 130 Query: 125 EMMRDIEKRTVLFKDNFDNTAKEPVVVPSRYPNLLVNGTSGISAGFATEIPPHNLREVID 184 E++RD++K TV F NFD+T++EPVV+P+ +PNLLVNG++GISAG+ATEIPPH+L EVID Sbjct: 131 ELLRDLDKETVEFVSNFDDTSEEPVVLPAAFPNLLVNGSTGISAGYATEIPPHHLGEVID 190 Query: 185 ACIAVMQKPDIALEDIMTFIKGPDFPXXXXXXXXXXXXDAYRTGKGRIYLRSKTEIENLR 244 A + + KP+ ++D++T +KGPDFP AY TGKG+I +R K E+E +R Sbjct: 191 ATMMRIDKPNSTVDDLLTVMKGPDFPTGGIIQGIDGIKKAYETGKGKIIIRGKAEVETVR 250 Query: 245 GGKQQIVITEVPFQIVKSRLVTSMENIRLEKKIEGIAEVRDESGRDGLRIVVELKKEADA 304 GGKQQIVITE+P+++ K+ LV M+ +RL+KK++GIAEVRDE+ R GLRIVVELKKEA+A Sbjct: 251 GGKQQIVITEIPYEVNKANLVKKMDELRLDKKLDGIAEVRDETDRTGLRIVVELKKEANA 310 Query: 305 QGILAYLLKKTDLQVTYNFNMVAIVNKSPQQLGLKAILEAYIAHQREVVTHRTQFDLEKA 364 +GIL YL K TDLQ+ YNFNMVAI N+ P + L IL+AYI HQ+EV+T R+Q++L KA Sbjct: 311 EGILNYLYKNTDLQIPYNFNMVAINNRRPTLMTLPKILDAYIGHQKEVITRRSQYELRKA 370 Query: 365 EDRAHVLEGLVKALNILDEVIAAIKASKNRQDAQNNLVWMFGFSERQADSILTLQLYRLT 424 E+R H++EGL KAL+ILD+VI I+ASK++++A++NL FGF+E QA++I++LQLYRLT Sbjct: 371 ENRQHIVEGLKKALSILDQVIETIRASKDKRNAKDNLSAKFGFTEAQAEAIVSLQLYRLT 430 Query: 425 NLEIHSLQKELDEMNARIAVLKGILESDKKLIAVIRKELIEIRDKYGIDRRSLIQGXXXX 484 N +I +LQ+E DE+N +I L+ +L+S+K+L+ VI+ +L ++ Y DRR++I+ Sbjct: 431 NTDITALQEEADELNKKIIELQAVLQSEKRLLQVIKTDLKRVKKTYSDDRRAIIEDQIEE 490 Query: 485 XXXXXXXXXNAEDVLVALSADGYIKRTGMLSFTRSGGERNASGVKEGDHIVRLMDLNTRD 544 EDV+V ++ +GY+KRTG S S G+ G+KEGD ++ D NT + Sbjct: 491 IKIDVEVMIPQEDVIVTVTKEGYVKRTGWRSHNASNGK--DFGMKEGDILLERFDTNTTE 548 Query: 545 SLLVFTRKGQYFLLPVHQIPEFKWKEPGTAIVNVIGLAKGDGIASILPVGNMDDPGASLV 604 ++L+FT KG Y LPV+++P+ +WK+ G + N++ L + + I V N ++ +V Sbjct: 549 TVLLFTNKGNYIYLPVYEMPDIRWKDLGQHVANIVSLDRDETIIWATVVPNFEEEKRFIV 608 Query: 605 FVTRKGQVKRTELKEYSTSR-SGAVAACKVAEGDEVLTVALSSGDKEIVLVTREGMSIRF 663 FVTR G +K+TEL +Y R S A A + + DEV+ + + G +IVL T ++ F Sbjct: 609 FVTRNGMIKKTELNQYKVQRYSRAFVAVNLKKDDEVVDIFATDGTSDIVLATHGAYALIF 668 Query: 664 RENEVNPMGRVASGVRGIQLREGDEVVSCFWVNEDEGEILAVTEIGYAKRTLLLDYPAQS 723 E EV+P+G A+GV+ I L+E D V S +N D+ +++ VT+ G KR + + Sbjct: 669 HEEEVSPVGVRAAGVKAINLKEDDYVASGKPLNGDKDQLILVTQRGAVKRLKASEIEKST 728 Query: 724 RGGKGMPTFEFKEGKRVRPNGSRISGAFYCREPLELVAITREGATHSFSSESAPLSERRS 783 R +G+ FKE KR N RI G R+ + T + ++ +R S Sbjct: 729 RAKRGLVI--FKELKR---NPYRIVGIEIVRDDELVYMKTEKNIVEEIDPKAYRNKDRYS 783 Query: 784 IGKQLVSVEKKDEIISLF 801 G ++ V E++ + Sbjct: 784 NGSLVLDVNDTGEVVETW 801 >gb|AAB81615.1| ParC [Bacillus subtilis] Length = 806 Score = 776 bits (2004), Expect = 0.0, Method: Compositional matrix adjust. Identities = 392/798 (49%), Positives = 552/798 (69%), Gaps = 10/798 (1%) Query: 5 LEEVVGDRFGRYSKYIIQDRAIPDVRDGLKPVQRRILYAMYDSGNTPDKPYRKSAKTVGD 64 LEEV+GDRFGRYSKYIIQDRA+PD RDGLKPVQRRILYAM+ GNT DK +RK+AKTVG+ Sbjct: 12 LEEVIGDRFGRYSKYIIQDRALPDARDGLKPVQRRILYAMHTDGNTFDKNFRKAAKTVGN 71 Query: 65 VMGNYHPHGDSSIYEGMVRMAQPWKMGHVLIDGHGNWGSMDDDPAAAMRYTEARLSPIAM 124 V+GNYHPHGDSS+YE MVRM+Q WK+ +VLI+ HGN GS+D DP AAMRYTEARLSPIA Sbjct: 72 VIGNYHPHGDSSVYEAMVRMSQDWKVRNVLIEMHGNNGSIDGDPPAAMRYTEARLSPIAS 131 Query: 125 EMMRDIEKRTVLFKDNFDNTAKEPVVVPSRYPNLLVNGTSGISAGFATEIPPHNLREVID 184 E++RDI+K TV F NFD+T+KEPVV+P+ +PNLLVNG++GISAG+AT+IPPH+L EVID Sbjct: 132 ELLRDIDKNTVEFVPNFDDTSKEPVVLPAMFPNLLVNGSTGISAGYATDIPPHHLGEVID 191 Query: 185 ACIAVMQKPDIALEDIMTFIKGPDFPXXXXXXXXXXXXDAYRTGKGRIYLRSKTEIENLR 244 A I +Q P +++++M IKGPDFP AY TGKG+I +R K EIE +R Sbjct: 192 AVIKRIQMPSCSVDELMEVIKGPDFPTGGIIQGVDGIRKAYETGKGKIIIRGKAEIETIR 251 Query: 245 GGKQQIVITEVPFQIVKSRLVTSMENIRLEKKIEGIAEVRDESGRDGLRIVVELKKEADA 304 GG++QIVITE+PF++ K+ LV M+ R++KK+EGI+EVRDE+ R GLR+V+ELKKEADA Sbjct: 252 GGREQIVITEIPFEVNKANLVKKMDEFRIDKKVEGISEVRDETDRTGLRVVIELKKEADA 311 Query: 305 QGILAYLLKKTDLQVTYNFNMVAIVNKSPQQLGLKAILEAYIAHQREVVTHRTQFDLEKA 364 +GIL +L K TDLQ+TYNFNMVAI N+ P + L +IL+AYI HQ+EVVT+R+ ++L+KA Sbjct: 312 KGILNFLYKNTDLQITYNFNMVAIHNRRPMLMSLPSILDAYIGHQKEVVTNRSVYELQKA 371 Query: 365 EDRAHVLEGLVKALNILDEVIAAIKASKNRQDAQNNLVWMFGFSERQADSILTLQLYRLT 424 +DR H++EGL+KAL+ILDEVIA I++S +++DA+NNL+ + F+E QA++I++LQLYRLT Sbjct: 372 KDRHHIVEGLMKALSILDEVIATIRSSSDKRDAKNNLIAKYEFTEPQAEAIVSLQLYRLT 431 Query: 425 NLEIHSLQKELDEMNARIAVLKGILESDKKLIAVIRKELIEIRDKYGIDRRSLIQGXXXX 484 N +I +L++E +E+ +I L+ IL +DKKL+ VI L ++ KY RRS+I+ Sbjct: 432 NTDITALKEEAEELGKKIEELESILSNDKKLLKVITNSLKALKKKYADTRRSVIEEKIEE 491 Query: 485 XXXXXXXXXNAEDVLVALSADGYIKRTGMLSFTRSGGERNASGVKEGDHIVRLMDLNTRD 544 +EDV V ++ DGY+KRT SF S G+ G+K+ D ++ ++NT D Sbjct: 492 IKINLEVMVASEDVYVTVTKDGYLKRTSQRSFAASNGQ--DFGMKDTDRMLHQFEMNTTD 549 Query: 545 SLLVFTRKGQYFLLPVHQIPEFKWKEPGTAIVNVIGLAKGDGIASILPVGNMDDPGASLV 604 LL+FT KG Y PVHQ+P+ +WK+ G N+I + + + I +P+ DP A L+ Sbjct: 550 VLLLFTNKGSYIYCPVHQLPDIRWKDMGQHFSNLITIDRDETIVKAIPIKEF-DPSAYLL 608 Query: 605 FVTRKGQVKRTELKEYSTSR-SGAVAACKVAEGDEVLTVALSSGDKEIVLVTREGMSIRF 663 F T+ G VK+TEL Y R S A+ A + DE++ V +++G+ +I + T G + F Sbjct: 609 FFTKNGMVKKTELTHYKAQRYSKALVALNLKGEDELIDVHVTNGESQIFMATHLGYGLWF 668 Query: 664 RENEVNPMGRVASGVRGIQLREGDEVVSCFWVNEDEGEILAVTEIGYAKRTLLLDYPAQS 723 E+EVN +G A+GV+GI L+E D VVS + + + I+ T+ G KR L ++ S Sbjct: 669 GEDEVNVVGARAAGVKGINLKEDDFVVSGEILQQSDS-IVLFTQRGAVKRMSLSEFEKTS 727 Query: 724 RGGKGMPTFEFKEGKRVRPNGSRISGAFYCREPLELVAITREGATHSFSSESAPLSERRS 783 R +G+ + ++ N R+ F C L+A T +G ++ ++R S Sbjct: 728 RAKRGVVML-----RELKKNPHRVVALFACGLEQRLMAETEKGDRKELQTKELRTNDRYS 782 Query: 784 IGKQLVSVEKKDEIISLF 801 G E+ ++ +++ Sbjct: 783 NGSFFFDEEESGKVTAVW 800 Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF Posted date: Mar 24, 2004 1:53 AM Number of letters in database: 757,237,578 Number of sequences in database: 2,715,099 Lambda K H 0.318 0.136 0.385 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 2715099 Number of Hits to DB: 1,115,531,766 Number of extensions: 46300178 Number of successful extensions: 125548 Number of sequences better than 1.0e-05: 2298 Number of HSP's gapped: 120524 Number of HSP's successfully gapped: 2437 Length of query: 805 Length of database: 757,237,578 Length adjustment: 134 Effective length of query: 671 Effective length of database: 393,414,312 Effective search space: 263981003352 Effective search space used: 263981003352 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 130 (54.7 bits)