BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0349.0004.p
         (64 letters)

Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF 
           2,715,099 sequences; 757,237,578 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|NP_977728.1| conserved hypothetical protein [Bacillus cereus...    95   5e-19
ref|NP_655193.1| hypothetical protein predicted by GeneMark [Bac...    95   6e-19
ref|NP_831077.1| hypothetical protein [Bacillus cereus ATCC 1457...    95   6e-19
emb|CAA10860.1| YkwD protein [Bacillus subtilis]                       94   1e-18
ref|NP_389280.1| similar to hypothetical proteins from B. subtil...    90   1e-17

>ref|NP_977728.1| conserved hypothetical protein [Bacillus cereus ATCC 10987]
 gb|AAS40336.1| conserved hypothetical protein [Bacillus cereus ATCC 10987]
          Length = 275

 Score = 94.7 bits (234), Expect = 5e-19,   Method: Compositional matrix adjust.
 Identities = 43/66 (65%), Positives = 51/66 (77%), Gaps = 2/66 (3%)

Query: 1   MMSAFGVTYQYAGENIAMGQRTPQEVMTAWMNSAGHRANILSANFNYIGVGF--DNNYWV 58
           MM  FG++Y  AGENIA GQRTP+EV+ AWMNSAGHRANIL+  F +IGVG+    NYW 
Sbjct: 210 MMKKFGISYTSAGENIAQGQRTPEEVVQAWMNSAGHRANILNNGFTHIGVGYVESGNYWT 269

Query: 59  QEFIGK 64
           Q+FI K
Sbjct: 270 QQFITK 275


>ref|NP_655193.1| hypothetical protein predicted by GeneMark [Bacillus anthracis
           A2012]
 ref|NP_843773.1| conserved hypothetical protein [Bacillus anthracis str. Ames]
 gb|AAP25259.1| conserved hypothetical protein [Bacillus anthracis str. Ames]
          Length = 275

 Score = 94.7 bits (234), Expect = 6e-19,   Method: Compositional matrix adjust.
 Identities = 43/66 (65%), Positives = 51/66 (77%), Gaps = 2/66 (3%)

Query: 1   MMSAFGVTYQYAGENIAMGQRTPQEVMTAWMNSAGHRANILSANFNYIGVGF--DNNYWV 58
           MM  FG++Y  AGENIA GQRTP+EV+ AWMNSAGHRANIL+  F +IGVG+    NYW 
Sbjct: 210 MMKKFGISYTSAGENIAQGQRTPEEVVQAWMNSAGHRANILNNGFTHIGVGYVESGNYWT 269

Query: 59  QEFIGK 64
           Q+FI K
Sbjct: 270 QQFITK 275


>ref|NP_831077.1| hypothetical protein [Bacillus cereus ATCC 14579]
 gb|AAP08278.1| hypothetical protein [Bacillus cereus ATCC 14579]
          Length = 275

 Score = 94.7 bits (234), Expect = 6e-19,   Method: Compositional matrix adjust.
 Identities = 43/66 (65%), Positives = 51/66 (77%), Gaps = 2/66 (3%)

Query: 1   MMSAFGVTYQYAGENIAMGQRTPQEVMTAWMNSAGHRANILSANFNYIGVGF--DNNYWV 58
           MM  FG++Y  AGENIA GQRTP+EV+ AWMNSAGHRANIL+  F +IGVG+    NYW 
Sbjct: 210 MMKKFGISYTSAGENIAQGQRTPEEVVQAWMNSAGHRANILNNGFTHIGVGYVESGNYWT 269

Query: 59  QEFIGK 64
           Q+FI K
Sbjct: 270 QQFITK 275


>emb|CAA10860.1| YkwD protein [Bacillus subtilis]
          Length = 257

 Score = 94.0 bits (232), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 40/66 (60%), Positives = 52/66 (78%), Gaps = 2/66 (3%)

Query: 1   MMSAFGVTYQYAGENIAMGQRTPQEVMTAWMNSAGHRANILSANFNYIGVGF--DNNYWV 58
           MM +FG++Y+ AGENIA GQ+TP+EV+ AWMNS GHR NIL+ NF +IGVG+    + W 
Sbjct: 192 MMKSFGISYKTAGENIAKGQKTPEEVVKAWMNSEGHRKNILNPNFTHIGVGYVESGSIWT 251

Query: 59  QEFIGK 64
           Q+FIGK
Sbjct: 252 QQFIGK 257


>ref|NP_389280.1| similar to hypothetical proteins from B. subtilis [Bacillus
           subtilis]
 pir||C69870 conserved hypothetical protein ykwD - Bacillus subtilis
 emb|CAB13270.1| ykwD [Bacillus subtilis subsp. subtilis str. 168]
          Length = 257

 Score = 90.1 bits (222), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 40/66 (60%), Positives = 52/66 (78%), Gaps = 2/66 (3%)

Query: 1   MMSAFGVTYQYAGENIAMGQRTPQEVMTAWMNSAGHRANILSANFNYIGVGF--DNNYWV 58
           MM +FG++Y+ AGENIA GQ+TP+EV+ AWMNS GHR NIL+ NF +IGVG+    + W 
Sbjct: 192 MMKSFGISYKTAGENIAKGQKTPEEVVKAWMNSEGHRKNILNPNFTHIGVGYVESGSIWT 251

Query: 59  QEFIGK 64
           Q+FIGK
Sbjct: 252 QQFIGK 257


  Database: All non-redundant GenBank CDS
  translations+PDB+SwissProt+PIR+PRF
    Posted date:  Mar 24, 2004  1:53 AM
  Number of letters in database: 757,237,578
  Number of sequences in database:  2,715,099
  
Lambda     K      H
   0.321    0.132    0.415 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 2715099
Number of Hits to DB: 99,122,754
Number of extensions: 3018712
Number of successful extensions: 5642
Number of sequences better than 1.0e-05: 33
Number of HSP's gapped: 5639
Number of HSP's successfully gapped: 33
Length of query: 64
Length of database: 757,237,578
Length adjustment: 35
Effective length of query: 29
Effective length of database: 662,209,113
Effective search space: 19204064277
Effective search space used: 19204064277
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 120 (50.8 bits)