BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0348.0009.p (88 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF 2,715,099 sequences; 757,237,578 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gb|AAB67968.1| internalin [Listeria monocytogenes] 62 3e-09 emb|CAC20638.1| internalin G [Listeria monocytogenes] 62 3e-09 ref|NP_463939.1| similar to internalin, peptidoglycan bound prot... 62 3e-09 gb|AAB67970.1| inlD [Listeria monocytogenes] 59 2e-08 ref|NP_662411.1| Rab family protein [Chlorobium tepidum TLS] >gi... 59 4e-08 >gb|AAB67968.1| internalin [Listeria monocytogenes] Length = 821 Score = 62.4 bits (150), Expect = 3e-09, Method: Compositional matrix adjust. Identities = 32/67 (47%), Positives = 44/67 (65%) Query: 1 LNKLTFLAVEGNQITDLSPVSGLSALKKLVIDNNKIKSLVPLKNLNKLTDLLASNNQVED 60 L L FL + GNQITDLSP+S L+ L ++ I +NKI + PL+NL +TDL +N + D Sbjct: 98 LTNLKFLNLNGNQITDLSPLSNLTKLTEIYIGDNKISDISPLQNLTNVTDLYLVDNDISD 157 Query: 61 LSPVQKL 67 L P+ L Sbjct: 158 LRPLANL 164 Score = 55.5 bits (132), Expect = 4e-07, Method: Compositional matrix adjust. Identities = 33/79 (41%), Positives = 49/79 (62%), Gaps = 1/79 (1%) Query: 4 LTFLAVEGNQITDLSPVSGLSALKKLVIDNNKIKSLVPLKNLNKLTDLLASNNQVEDLSP 63 LT L + NQI DLSP++GL+ L + +NKI + P+ NL +L L +N++ DLSP Sbjct: 212 LTRLTLSDNQIEDLSPLAGLTKLDNIAAYSNKITDITPVTNLTRLQYLDLGSNEITDLSP 271 Query: 64 VQKL-KLEWLMLRRSRLSN 81 V L KL L L ++++N Sbjct: 272 VANLQKLTSLHLANNQITN 290 Score = 52.8 bits (125), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 32/82 (39%), Positives = 54/82 (65%), Gaps = 1/82 (1%) Query: 1 LNKLTFLAVEGNQITDLSPVSGLSALKKLVIDNNKIKSLVPLKNLNKLTDLLASNNQVED 60 L KL +A N+ITD++PV+ L+ L+ L + +N+I L P+ NL KLT L +NNQ+ + Sbjct: 231 LTKLDNIAAYSNKITDITPVTNLTRLQYLDLGSNEITDLSPVANLQKLTSLHLANNQITN 290 Query: 61 LSPVQKL-KLEWLMLRRSRLSN 81 +S ++ L L L L+ +++S+ Sbjct: 291 ISMLEDLTNLTSLGLQNNKISD 312 Score = 51.2 bits (121), Expect = 7e-06, Method: Compositional matrix adjust. Identities = 26/82 (31%), Positives = 55/82 (67%), Gaps = 1/82 (1%) Query: 1 LNKLTFLAVEGNQITDLSPVSGLSALKKLVIDNNKIKSLVPLKNLNKLTDLLASNNQVED 60 + +L L V G+ + DL+P++ +++L +L + +N+I+ L PL L KL ++ A +N++ D Sbjct: 187 MTRLNNLEVTGSILKDLTPLADVTSLTRLTLSDNQIEDLSPLAGLTKLDNIAAYSNKITD 246 Query: 61 LSPVQKL-KLEWLMLRRSRLSN 81 ++PV L +L++L L + +++ Sbjct: 247 ITPVTNLTRLQYLDLGSNEITD 268 >emb|CAC20638.1| internalin G [Listeria monocytogenes] Length = 825 Score = 62.4 bits (150), Expect = 3e-09, Method: Compositional matrix adjust. Identities = 32/67 (47%), Positives = 44/67 (65%) Query: 1 LNKLTFLAVEGNQITDLSPVSGLSALKKLVIDNNKIKSLVPLKNLNKLTDLLASNNQVED 60 L L FL + GNQITDLSP+S L+ L ++ I +NKI + PL+NL +TDL +N + D Sbjct: 98 LTNLKFLNLNGNQITDLSPLSNLTKLTEIYIGDNKISDISPLQNLTNVTDLYLVDNDISD 157 Query: 61 LSPVQKL 67 L P+ L Sbjct: 158 LRPLANL 164 Score = 55.5 bits (132), Expect = 4e-07, Method: Compositional matrix adjust. Identities = 33/79 (41%), Positives = 49/79 (62%), Gaps = 1/79 (1%) Query: 4 LTFLAVEGNQITDLSPVSGLSALKKLVIDNNKIKSLVPLKNLNKLTDLLASNNQVEDLSP 63 LT L + NQI DLSP++GL+ L + +NKI + P+ NL +L L +N++ DLSP Sbjct: 212 LTRLTLSDNQIEDLSPLAGLTKLGNIAAYSNKITDITPVTNLTRLQYLDLGSNEITDLSP 271 Query: 64 VQKL-KLEWLMLRRSRLSN 81 V L KL L L ++++N Sbjct: 272 VANLQKLTSLHLANNQITN 290 Score = 52.8 bits (125), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 32/82 (39%), Positives = 54/82 (65%), Gaps = 1/82 (1%) Query: 1 LNKLTFLAVEGNQITDLSPVSGLSALKKLVIDNNKIKSLVPLKNLNKLTDLLASNNQVED 60 L KL +A N+ITD++PV+ L+ L+ L + +N+I L P+ NL KLT L +NNQ+ + Sbjct: 231 LTKLGNIAAYSNKITDITPVTNLTRLQYLDLGSNEITDLSPVANLQKLTSLHLANNQITN 290 Query: 61 LSPVQKL-KLEWLMLRRSRLSN 81 +S ++ L L L L+ +++S+ Sbjct: 291 ISMLEDLTNLTSLGLQNNKISD 312 Score = 51.2 bits (121), Expect = 7e-06, Method: Compositional matrix adjust. Identities = 26/82 (31%), Positives = 55/82 (67%), Gaps = 1/82 (1%) Query: 1 LNKLTFLAVEGNQITDLSPVSGLSALKKLVIDNNKIKSLVPLKNLNKLTDLLASNNQVED 60 + +L L V G+ + DL+P++ +++L +L + +N+I+ L PL L KL ++ A +N++ D Sbjct: 187 MTRLNNLEVTGSILKDLTPLADVTSLTRLTLSDNQIEDLSPLAGLTKLGNIAAYSNKITD 246 Query: 61 LSPVQKL-KLEWLMLRRSRLSN 81 ++PV L +L++L L + +++ Sbjct: 247 ITPVTNLTRLQYLDLGSNEITD 268 >ref|NP_463939.1| similar to internalin, peptidoglycan bound protein (LPxTG motif) [Listeria monocytogenes EGD-e] pir||AB1126 internalin, peptidoglycan bound protein (LPxTG motif) homolog lmo0409 [imported] - Listeria monocytogenes (strain EGD-e) emb|CAC98488.1| lmo0409 [Listeria monocytogenes] Length = 821 Score = 62.4 bits (150), Expect = 3e-09, Method: Compositional matrix adjust. Identities = 32/67 (47%), Positives = 44/67 (65%) Query: 1 LNKLTFLAVEGNQITDLSPVSGLSALKKLVIDNNKIKSLVPLKNLNKLTDLLASNNQVED 60 L L FL + GNQITDLSP+S L+ L ++ I +NKI + PL+NL +TDL +N + D Sbjct: 98 LTNLKFLNLNGNQITDLSPLSNLTKLTEIYIGDNKISDISPLQNLTNVTDLYLVDNDISD 157 Query: 61 LSPVQKL 67 L P+ L Sbjct: 158 LRPLANL 164 Score = 55.5 bits (132), Expect = 4e-07, Method: Compositional matrix adjust. Identities = 33/79 (41%), Positives = 49/79 (62%), Gaps = 1/79 (1%) Query: 4 LTFLAVEGNQITDLSPVSGLSALKKLVIDNNKIKSLVPLKNLNKLTDLLASNNQVEDLSP 63 LT L + NQI DLSP++GL+ L + +NKI + P+ NL +L L +N++ DLSP Sbjct: 212 LTRLTLSDNQIEDLSPLAGLTKLDNIAAYSNKITDITPVTNLTRLQYLDLGSNEITDLSP 271 Query: 64 VQKL-KLEWLMLRRSRLSN 81 V L KL L L ++++N Sbjct: 272 VANLQKLTSLHLANNQITN 290 Score = 52.4 bits (124), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 32/82 (39%), Positives = 54/82 (65%), Gaps = 1/82 (1%) Query: 1 LNKLTFLAVEGNQITDLSPVSGLSALKKLVIDNNKIKSLVPLKNLNKLTDLLASNNQVED 60 L KL +A N+ITD++PV+ L+ L+ L + +N+I L P+ NL KLT L +NNQ+ + Sbjct: 231 LTKLDNIAAYSNKITDITPVTNLTRLQYLDLGSNEITDLSPVANLQKLTSLHLANNQITN 290 Query: 61 LSPVQKL-KLEWLMLRRSRLSN 81 +S ++ L L L L+ +++S+ Sbjct: 291 ISMLEDLTNLTSLGLQNNKISD 312 Score = 51.2 bits (121), Expect = 7e-06, Method: Compositional matrix adjust. Identities = 26/82 (31%), Positives = 55/82 (67%), Gaps = 1/82 (1%) Query: 1 LNKLTFLAVEGNQITDLSPVSGLSALKKLVIDNNKIKSLVPLKNLNKLTDLLASNNQVED 60 + +L L V G+ + DL+P++ +++L +L + +N+I+ L PL L KL ++ A +N++ D Sbjct: 187 MTRLNNLEVTGSILKDLTPLADVTSLTRLTLSDNQIEDLSPLAGLTKLDNIAAYSNKITD 246 Query: 61 LSPVQKL-KLEWLMLRRSRLSN 81 ++PV L +L++L L + +++ Sbjct: 247 ITPVTNLTRLQYLDLGSNEITD 268 >gb|AAB67970.1| inlD [Listeria monocytogenes] Length = 567 Score = 59.3 bits (142), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 34/71 (47%), Positives = 46/71 (64%), Gaps = 1/71 (1%) Query: 12 NQITDLSPVSGLSALKKLVIDNNKIKSLVPLKNLNKLTDLLASNNQVEDLSPVQKL-KLE 70 NQIT +SPVSGL L L IDNNKI L P+ L+KL L A +NQ+ DL P+ L +E Sbjct: 172 NQITAISPVSGLKNLVGLGIDNNKISDLSPISGLSKLNHLTADSNQISDLRPLSNLAAME 231 Query: 71 WLMLRRSRLSN 81 + L +++S+ Sbjct: 232 VMRLDGNQISD 242 Score = 58.9 bits (141), Expect = 4e-08, Method: Compositional matrix adjust. Identities = 31/82 (37%), Positives = 50/82 (60%), Gaps = 1/82 (1%) Query: 1 LNKLTFLAVEGNQITDLSPVSGLSALKKLVIDNNKIKSLVPLKNLNKLTDLLASNNQVED 60 L L L ++ N+I+DLSP+SGLS L L D+N+I L PL NL + + NQ+ D Sbjct: 183 LKNLVGLGIDNNKISDLSPISGLSKLNHLTADSNQISDLRPLSNLAAMEVMRLDGNQISD 242 Query: 61 LSPVQKLK-LEWLMLRRSRLSN 81 ++P+ L L ++ L +++S+ Sbjct: 243 VTPIANLANLNYVFLAENQISD 264 Score = 52.8 bits (125), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 26/67 (38%), Positives = 43/67 (64%) Query: 1 LNKLTFLAVEGNQITDLSPVSGLSALKKLVIDNNKIKSLVPLKNLNKLTDLLASNNQVED 60 L+KL L + NQI+DL P+S L+A++ + +D N+I + P+ NL L + + NQ+ D Sbjct: 205 LSKLNHLTADSNQISDLRPLSNLAAMEVMRLDGNQISDVTPIANLANLNYVFLAENQISD 264 Query: 61 LSPVQKL 67 +S +Q L Sbjct: 265 ISSLQPL 271 >ref|NP_662411.1| Rab family protein [Chlorobium tepidum TLS] gb|AAM72753.1| Rab family protein [Chlorobium tepidum TLS] Length = 1102 Score = 58.5 bits (140), Expect = 4e-08, Method: Compositional matrix adjust. Identities = 32/82 (39%), Positives = 56/82 (68%), Gaps = 1/82 (1%) Query: 1 LNKLTFLAVEGNQITDLSPVSGLSALKKLVIDNNKIKSLVPLKNLNKLTDLLASNNQVED 60 L LT L++ GN I+D++P+ L +L +L + +N+I + PL +L LT+L S+NQ+ D Sbjct: 150 LKSLTELSLSGNNISDIAPLESLKSLTELSLSSNQITDIAPLASLKSLTELSLSSNQISD 209 Query: 61 LSPVQKLK-LEWLMLRRSRLSN 81 ++P++ LK L L L R+++S+ Sbjct: 210 IAPLESLKSLTELQLSRNQISD 231 Score = 57.8 bits (138), Expect = 7e-08, Method: Compositional matrix adjust. Identities = 28/68 (41%), Positives = 48/68 (70%) Query: 1 LNKLTFLAVEGNQITDLSPVSGLSALKKLVIDNNKIKSLVPLKNLNKLTDLLASNNQVED 60 L LT L++ NQITD++P++ L +L +L + +N+I + PL++L LT+L S NQ+ D Sbjct: 172 LKSLTELSLSSNQITDIAPLASLKSLTELSLSSNQISDIAPLESLKSLTELQLSRNQISD 231 Query: 61 LSPVQKLK 68 ++P++ LK Sbjct: 232 IAPLESLK 239 Score = 57.4 bits (137), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 32/82 (39%), Positives = 55/82 (67%), Gaps = 1/82 (1%) Query: 1 LNKLTFLAVEGNQITDLSPVSGLSALKKLVIDNNKIKSLVPLKNLNKLTDLLASNNQVED 60 L LT L++ NQI+D++P+ L +L +L + N+I + PL++L LT+L S+NQ+ D Sbjct: 194 LKSLTELSLSSNQISDIAPLESLKSLTELQLSRNQISDIAPLESLKSLTELQLSSNQITD 253 Query: 61 LSPVQKLK-LEWLMLRRSRLSN 81 ++P+ LK L L L R+++S+ Sbjct: 254 IAPLASLKSLTELQLSRNQISD 275 Score = 55.8 bits (133), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 29/68 (42%), Positives = 47/68 (69%) Query: 1 LNKLTFLAVEGNQITDLSPVSGLSALKKLVIDNNKIKSLVPLKNLNKLTDLLASNNQVED 60 L LT L + NQI+D++P+ L++L KL ++ N+I + PL +LN LT+L S+NQ+ D Sbjct: 260 LKSLTELQLSRNQISDIAPLESLNSLSKLWLNGNQITDIAPLASLNSLTELELSSNQITD 319 Query: 61 LSPVQKLK 68 ++P+ LK Sbjct: 320 IAPLASLK 327 Score = 55.5 bits (132), Expect = 4e-07, Method: Compositional matrix adjust. Identities = 29/68 (42%), Positives = 48/68 (70%) Query: 1 LNKLTFLAVEGNQITDLSPVSGLSALKKLVIDNNKIKSLVPLKNLNKLTDLLASNNQVED 60 LN L+ L ++ NQITD++P++ L++L L + NKI + PL++L LT+L S+NQ+ D Sbjct: 84 LNSLSMLWLDRNQITDIAPLASLNSLSMLWLFGNKISDIAPLESLKSLTELQLSSNQITD 143 Query: 61 LSPVQKLK 68 ++P+ LK Sbjct: 144 IAPLASLK 151 Score = 55.1 bits (131), Expect = 6e-07, Method: Compositional matrix adjust. Identities = 28/68 (41%), Positives = 45/68 (66%) Query: 1 LNKLTFLAVEGNQITDLSPVSGLSALKKLVIDNNKIKSLVPLKNLNKLTDLLASNNQVED 60 L LT L + NQITD++P++ L +L +L + N I + PL++L LT+L S+NQ+ D Sbjct: 128 LKSLTELQLSSNQITDIAPLASLKSLTELSLSGNNISDIAPLESLKSLTELSLSSNQITD 187 Query: 61 LSPVQKLK 68 ++P+ LK Sbjct: 188 IAPLASLK 195 Score = 52.8 bits (125), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 26/68 (38%), Positives = 46/68 (67%) Query: 1 LNKLTFLAVEGNQITDLSPVSGLSALKKLVIDNNKIKSLVPLKNLNKLTDLLASNNQVED 60 LN L+ L + GN+I+D++P+ L +L +L + +N+I + PL +L LT+L S N + D Sbjct: 106 LNSLSMLWLFGNKISDIAPLESLKSLTELQLSSNQITDIAPLASLKSLTELSLSGNNISD 165 Query: 61 LSPVQKLK 68 ++P++ LK Sbjct: 166 IAPLESLK 173 Score = 52.4 bits (124), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 26/64 (40%), Positives = 46/64 (71%) Query: 1 LNKLTFLAVEGNQITDLSPVSGLSALKKLVIDNNKIKSLVPLKNLNKLTDLLASNNQVED 60 LN L+ L + GNQITD++P++ L++L +L + +N+I + PL +L L+ L S+NQ+ D Sbjct: 282 LNSLSKLWLNGNQITDIAPLASLNSLTELELSSNQITDIAPLASLKSLSTLWLSSNQISD 341 Query: 61 LSPV 64 ++P+ Sbjct: 342 IAPL 345 Score = 51.6 bits (122), Expect = 5e-06, Method: Compositional matrix adjust. Identities = 26/67 (38%), Positives = 44/67 (65%) Query: 1 LNKLTFLAVEGNQITDLSPVSGLSALKKLVIDNNKIKSLVPLKNLNKLTDLLASNNQVED 60 L LT L + NQI+D++P+ L +L +L + +N+I + PL +L LT+L S NQ+ D Sbjct: 216 LKSLTELQLSRNQISDIAPLESLKSLTELQLSSNQITDIAPLASLKSLTELQLSRNQISD 275 Query: 61 LSPVQKL 67 ++P++ L Sbjct: 276 IAPLESL 282 Score = 51.6 bits (122), Expect = 5e-06, Method: Compositional matrix adjust. Identities = 26/67 (38%), Positives = 44/67 (65%) Query: 1 LNKLTFLAVEGNQITDLSPVSGLSALKKLVIDNNKIKSLVPLKNLNKLTDLLASNNQVED 60 L LT L + NQITD++P++ L +L +L + N+I + PL++LN L+ L + NQ+ D Sbjct: 238 LKSLTELQLSSNQITDIAPLASLKSLTELQLSRNQISDIAPLESLNSLSKLWLNGNQITD 297 Query: 61 LSPVQKL 67 ++P+ L Sbjct: 298 IAPLASL 304 Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF Posted date: Mar 24, 2004 1:53 AM Number of letters in database: 757,237,578 Number of sequences in database: 2,715,099 Lambda K H 0.314 0.129 0.351 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 2715099 Number of Hits to DB: 123,117,632 Number of extensions: 4142827 Number of successful extensions: 15740 Number of sequences better than 1.0e-05: 96 Number of HSP's gapped: 15723 Number of HSP's successfully gapped: 391 Length of query: 88 Length of database: 757,237,578 Length adjustment: 57 Effective length of query: 31 Effective length of database: 602,476,935 Effective search space: 18676784985 Effective search space used: 18676784985 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.2 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 42 (22.0 bits) S2: 120 (50.8 bits)