BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0348.0008.p
         (109 letters)

Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF 
           2,715,099 sequences; 757,237,578 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|ZP_00181933.1| hypothetical protein Exigu279001 [Exiguobacte...    54   1e-06

>ref|ZP_00181933.1| hypothetical protein Exigu279001 [Exiguobacterium sp. 255-15]
          Length = 167

 Score = 53.5 bits (127), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 25/98 (25%), Positives = 51/98 (52%), Gaps = 1/98 (1%)

Query: 7   HISHNTSFYYAMLIEENRIYQFRTKMENIIKDKLNEGWNPAAGNSPLAISKELLLEYLVS 66
           HI  +  FY  ML+    +  F ++  + +K+     +          + ++LLL Y++ 
Sbjct: 65  HIEQHEQFYRTMLLN-GPVKTFISRFLDTLKENYQRVFEAHTVTETQLVDRDLLLNYVIG 123

Query: 67  SFMGIIIWWVKNDLPLPAGEVSSQFSRIVVYGHLKAAG 104
             +G++I W++N  P  A  ++ Q SR++V+G +K+ G
Sbjct: 124 GQLGLLISWLRNGRPYSAAYMADQLSRMIVFGTVKSIG 161


  Database: All non-redundant GenBank CDS
  translations+PDB+SwissProt+PIR+PRF
    Posted date:  Mar 24, 2004  1:53 AM
  Number of letters in database: 757,237,578
  Number of sequences in database:  2,715,099
  
Lambda     K      H
   0.320    0.136    0.405 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 2715099
Number of Hits to DB: 162,482,737
Number of extensions: 6189446
Number of successful extensions: 17468
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 17475
Number of HSP's successfully gapped: 1
Length of query: 109
Length of database: 757,237,578
Length adjustment: 75
Effective length of query: 34
Effective length of database: 553,605,153
Effective search space: 18822575202
Effective search space used: 18822575202
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 120 (50.8 bits)