BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0348.0005.p (207 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF 2,715,099 sequences; 757,237,578 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|NP_242831.1| transcriptional regulator (TetR/AcrR family) [B... 224 1e-57 ref|NP_976540.1| transcription regulator (TetR/AcrR family) BH19... 132 7e-30 ref|NP_622004.1| Transcriptional regulator [Thermoanaerobacter t... 103 4e-21 ref|NP_391400.1| similar to transcriptional regulator (TetR/AcrR... 90 3e-17 ref|NP_953780.1| transcriptional regulator, TetR family [Geobact... 79 8e-14 >ref|NP_242831.1| transcriptional regulator (TetR/AcrR family) [Bacillus halodurans] pir||E83895 transcription regulator (TetR/AcrR family) BH1965 [imported] - Bacillus halodurans (strain C-125) dbj|BAB05684.1| transcriptional regulator (TetR/AcrR family) [Bacillus halodurans] Length = 196 Score = 224 bits (570), Expect = 1e-57, Method: Compositional matrix adjust. Identities = 107/189 (56%), Positives = 143/189 (75%), Gaps = 1/189 (0%) Query: 7 GSTEKLLSAAIDLISEKGYNGVTTQEIAAAAGLSEKTLFRHFGSKQNLLESALERFQYAE 66 G++EKL+ AAIDLISE+GYNGVTT EIAAAAG SEKTLFRHFGSKQNLLE A +RF Y E Sbjct: 7 GTSEKLMIAAIDLISERGYNGVTTLEIAAAAGFSEKTLFRHFGSKQNLLEQAFDRFHYGE 66 Query: 67 EMRVFFSGKLVWELESDLLSISKKYHEIMNRDRKLIQIAIQDEGHIPGFKERRLQHPRQL 126 EM+ F KLVW+L DLL IS+ YH IMNR+RK+IQIAI++ ++PGF+ER +HP+QL Sbjct: 67 EMKGLFKEKLVWDLHEDLLMISQTYHTIMNRNRKMIQIAIKEGKNLPGFRERTHRHPQQL 126 Query: 127 LVFLADYFNKMNEKGKAACSNPTMQAFTFMMAQYGAFINDLEAG-NNYPGISLDQFIQEN 185 FL YF++M +K K +P A +FM+ +GAFIN+L++ + +SL++FI + Sbjct: 127 KEFLTTYFSEMIKKRKMIDVHPEHTAVSFMLLNFGAFINELDSDKKRFTNVSLEEFITNS 186 Query: 186 VKIFVKSLS 194 V++F + L+ Sbjct: 187 VRVFTRGLT 195 >ref|NP_976540.1| transcription regulator (TetR/AcrR family) BH1965 [imported] [Bacillus cereus ATCC 10987] gb|AAS39148.1| transcription regulator (TetR/AcrR family) BH1965 [imported] [Bacillus cereus ATCC 10987] Length = 193 Score = 132 bits (331), Expect = 7e-30, Method: Compositional matrix adjust. Identities = 63/189 (33%), Positives = 112/189 (59%) Query: 5 KQGSTEKLLSAAIDLISEKGYNGVTTQEIAAAAGLSEKTLFRHFGSKQNLLESALERFQY 64 + + EK++ AAI+L+ EKGY TT+EIA AG++E T+FR+F SK+ ++E+A+ F Y Sbjct: 3 RSKTAEKIIQAAIELVKEKGYTAATTKEIAMRAGVNEVTIFRNFKSKKGVIEAAVAEFSY 62 Query: 65 AEEMRVFFSGKLVWELESDLLSISKKYHEIMNRDRKLIQIAIQDEGHIPGFKERRLQHPR 124 ++ F ++VWELE+DL ++++ YH ++ + +I I I++ G P + P+ Sbjct: 63 VPHLKKFLQTEIVWELETDLKNLARHYHNFLDGVKDIIAIGIREAGEFPELDGEIAKIPQ 122 Query: 125 QLLVFLADYFNKMNEKGKAACSNPTMQAFTFMMAQYGAFINDLEAGNNYPGISLDQFIQE 184 L L+ YF KM EKG +N Q F+ +G F++ L + + ++FI+ Sbjct: 123 GLKEELSIYFAKMREKGNIIDTNIEAQVMNFIWINFGYFLSKLRFADRLTEVDDEKFIEN 182 Query: 185 NVKIFVKSL 193 N+ ++ ++L Sbjct: 183 NIVLYARAL 191 >ref|NP_622004.1| Transcriptional regulator [Thermoanaerobacter tengcongensis] gb|AAM23608.1| Transcriptional regulator [Thermoanaerobacter tengcongensis] Length = 194 Score = 103 bits (256), Expect = 4e-21, Method: Compositional matrix adjust. Identities = 58/185 (31%), Positives = 102/185 (55%) Query: 10 EKLLSAAIDLISEKGYNGVTTQEIAAAAGLSEKTLFRHFGSKQNLLESALERFQYAEEMR 69 EK++ + + LISEKGY TT+ IA AG++E T+FR F SK++++ AL+ + + M Sbjct: 7 EKIVVSTLKLISEKGYRSTTTRNIAEEAGVNEVTIFRCFRSKKDIVLYALKELELLKPMD 66 Query: 70 VFFSGKLVWELESDLLSISKKYHEIMNRDRKLIQIAIQDEGHIPGFKERRLQHPRQLLVF 129 K W+L+ DLL ++++YH+ D+ I I ++ KE ++ P+ Sbjct: 67 KKILEKCKWDLKEDLLMLAEEYHKNFTEDKAKIMIGLRSPEIFEEVKEYLIRIPKGFKDV 126 Query: 130 LADYFNKMNEKGKAACSNPTMQAFTFMMAQYGAFINDLEAGNNYPGISLDQFIQENVKIF 189 L +YF M +KG + + AF+F+ +G + G G S D+F++ +++IF Sbjct: 127 LIEYFKIMYQKGMLNNDDFELLAFSFLSLNFGFILMKASYGRKLIGFSNDEFVRRSIEIF 186 Query: 190 VKSLS 194 VK ++ Sbjct: 187 VKGIA 191 >ref|NP_391400.1| similar to transcriptional regulator (TetR/AcrR family) [Bacillus subtilis] pir||H70042 transcription regulator TetR/AcrR family homolog yvkB - Bacillus subtilis gb|AAC67267.1| YvkB [Bacillus subtilis] emb|CAB15537.1| yvkB [Bacillus subtilis subsp. subtilis str. 168] Length = 189 Score = 89.7 bits (221), Expect = 3e-17, Method: Compositional matrix adjust. Identities = 59/194 (30%), Positives = 98/194 (50%), Gaps = 7/194 (3%) Query: 1 MRPTKQGSTEKLLSAAIDLISEKGYNGVTTQEIAAAAGLSEKTLFRHFGSKQNLLESALE 60 MRPT + ++L AA+ L+ +KGY TT+EIA A +SE T+FR+F +KQ L+E+ L Sbjct: 1 MRPTNK----RILDAAMQLLVKKGYRATTTKEIAEKANVSEATIFRNFKNKQGLVEALLS 56 Query: 61 RFQYAEEMRVFFSGKLVWELESDLLSISKKYHEIMNRDRKLIQIAIQDEGHIPGFKERRL 120 Q++ R + +L DLL I E + + +I+I+ ++ Sbjct: 57 --QHSSN-RGSILEQTEGDLYKDLLHIGTCLLEELEHRKDIIKISFREPAMFQDVINHVT 113 Query: 121 QHPRQLLVFLADYFNKMNEKGKAACSNPTMQAFTFMMAQYGAFINDLEAGNNYPGISLDQ 180 ++P+ + L DY M EKG N A FM +G FI+ L G+ + ++ Sbjct: 114 EYPQSMKQLLVDYLKTMGEKGVIQTGNEAEHADVFMSIIFGYFIHRLHLGDRVISMPQEK 173 Query: 181 FIQENVKIFVKSLS 194 ++ + +FVK +S Sbjct: 174 MLEHSTALFVKGIS 187 >ref|NP_953780.1| transcriptional regulator, TetR family [Geobacter sulfurreducens PCA] gb|AAR36107.1| transcriptional regulator, TetR family [Geobacter sulfurreducens PCA] Length = 201 Score = 78.6 bits (192), Expect = 8e-14, Method: Compositional matrix adjust. Identities = 55/188 (29%), Positives = 92/188 (48%), Gaps = 8/188 (4%) Query: 8 STEKLLSAAIDLISEKGYNGVTTQEIAAAAGLSEKTLFRHFGSKQNLLESALERFQYAEE 67 + E++L A+ L S KGY G TT+EIA AG++E TLFRHF SK+ LLE A+ R+ Sbjct: 2 THERILETALGLFSTKGYLGATTREIARQAGIAEVTLFRHFPSKEKLLEEAITRYSILPS 61 Query: 68 MRVFFSGKLVWELESDLLSISKKYHEIMNRDRKLIQIAIQDEGHIP----GFKERRLQHP 123 +R F L E L +++ + + + + ++I + P G L Sbjct: 62 LRAFVPRALAMPYEDALAAMANILLDTLIQLKDWLRIMHAEVQRSPEKLLGVYHTFLD-- 119 Query: 124 RQLLVFLADYFNKMNEKGKAACSNPTMQAFTFMMAQYGAF-INDLEAGNNYPGISLDQFI 182 +L +A YF ++ ++G +P + A F Y F I ++ Y ++ + Sbjct: 120 -ELFEVIASYFRELQQRGSIGSFDPELGARVFHAMFYCFFNIEEVLLRKQYRPTDREKAV 178 Query: 183 QENVKIFV 190 +E V++FV Sbjct: 179 REFVRMFV 186 Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF Posted date: Mar 24, 2004 1:53 AM Number of letters in database: 757,237,578 Number of sequences in database: 2,715,099 Lambda K H 0.318 0.134 0.376 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 2715099 Number of Hits to DB: 289,994,187 Number of extensions: 10986098 Number of successful extensions: 31950 Number of sequences better than 1.0e-05: 27 Number of HSP's gapped: 31993 Number of HSP's successfully gapped: 27 Length of query: 207 Length of database: 757,237,578 Length adjustment: 120 Effective length of query: 87 Effective length of database: 431,425,698 Effective search space: 37534035726 Effective search space used: 37534035726 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 123 (52.0 bits)