BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0346.0075.p (528 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF 2,715,099 sequences; 757,237,578 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|NP_244550.1| xylan beta-1,4-xylosidase [Bacillus halodurans]... 712 0.0 gb|AAF66622.1| xylosidase/arabinofuranosidase [Azospirillum irak... 540 e-152 ref|NP_419805.1| xylan 1,4-beta-xylosidase [Caulobacter crescent... 531 e-149 ref|NP_694047.1| xylan 1,4-beta-xylosidase [Oceanobacillus iheye... 530 e-149 ref|NP_389640.1| xylan beta-1,4-xylosidase [Bacillus subtilis] >... 524 e-147 >ref|NP_244550.1| xylan beta-1,4-xylosidase [Bacillus halodurans] pir||C84110 xylan beta-1,4-xylosidase xynB [imported] - Bacillus halodurans (strain C-125) dbj|BAB07402.1| xylan beta-1,4-xylosidase [Bacillus halodurans] Length = 528 Score = 712 bits (1837), Expect = 0.0, Method: Compositional matrix adjust. Identities = 333/524 (63%), Positives = 403/524 (76%), Gaps = 1/524 (0%) Query: 6 IQNPILRGFHPDPSICRAGEDYYIATSTFEWFPGVRIHHSRDLVHWRMLTHALTRKSQLD 65 IQNPIL GFHPDPSI R G+DYYIATSTFEWFPGVRIHHSRDL HWR ++ LTR SQLD Sbjct: 5 IQNPILPGFHPDPSIVRVGDDYYIATSTFEWFPGVRIHHSRDLKHWRFVSSPLTRTSQLD 64 Query: 66 MEGDLDSGGVWAPCLSYDNGIFYLIYTDVKSRQGAFKDTPNYLVTARNIEGPWSEPVYLN 125 M+G+++SGG+WAPCLSY +G FYLIYTDVK GAFKD NYLVTA+NIEGPWS+P+YLN Sbjct: 65 MKGNMNSGGIWAPCLSYHDGTFYLIYTDVKQWHGAFKDAHNYLVTAQNIEGPWSDPIYLN 124 Query: 126 SSGFDPSLFHDSDGRKWLVNMRWDHRTDKNSFAGIVLQEYSAELERLIGPVFPIYKGTAL 185 SSGFDPSLFHD DGRKWLVNM WD+R + FAGI+LQEYS ++L+GPV IYKGT + Sbjct: 125 SSGFDPSLFHDDDGRKWLVNMIWDYRKGNHPFAGIILQEYSEAEQKLVGPVKNIYKGTDI 184 Query: 186 GLTEGPHLYRKDGWYYLITAEGGTQYNHAVTVARSRNIEGPYETAPHNPLLTSAGNSELE 245 LTEGPHLY+KDG+YYL+ AEGGT+Y HA T+ARS++I+GPYET P PL+TS G EL Sbjct: 185 QLTEGPHLYKKDGYYYLLVAEGGTEYEHAATLARSQSIDGPYETDPSYPLVTSTGQPELA 244 Query: 246 LQKAGHGCLVHTHTDEWYMVHLCGRPVKEKYCNLGRETAIQRCVFTEEAWLALADGTNRP 305 LQKAGHG LV T EWY+ HLCGRP+K KYC LGRETAIQ+ +TE+ WL + DG N P Sbjct: 245 LQKAGHGSLVETQNGEWYLAHLCGRPLKGKYCTLGRETAIQKVNWTEDGWLRIEDGGNHP 304 Query: 306 SVTVEGPDIPAHPFPAVAERDDFDAPELDVRWSTLRVPADESWLSLKERQGFLRLRGRES 365 V PD+P HPF E DDFDAP+L +W+TLR+PAD SW SL+ER G LRLRG ES Sbjct: 305 LREVTAPDLPEHPFEKEPELDDFDAPQLHHQWNTLRIPADPSWCSLEERPGHLRLRGMES 364 Query: 366 MSSLHRQSLVALRQQAFCCSAETELEFEPEHFQQMAGLIVYYDTKDYVYLRITHDEVLGK 425 ++S+H QSLVA RQQ+F C ET+LE++PE FQ MAGL++YYDT+D+VYL +T E GK Sbjct: 365 LTSVHSQSLVARRQQSFHCEVETKLEYQPESFQHMAGLVIYYDTEDHVYLHVTWHEEKGK 424 Query: 426 CLGIVRSVDGVYDDSICAQIPLLPGASCRLKVLIERESAQFYYSV-GSTLWEKIGPSLDI 484 CL I+++ G YD+ + + IPL + LK I RE+ Y+ G W+ +GP++D+ Sbjct: 425 CLQIIQTKGGNYDELLASPIPLAEEKAVYLKGRIHRETMHLYFKQEGEAEWQPVGPTIDV 484 Query: 485 YHLSDDFPAYIRFTGTFIGMCAQDLSGTFHAADFDYFEYKELSR 528 H+SDD +RFTGTF+GM QDLSGT ADFDYF YKEL + Sbjct: 485 THMSDDSAKQVRFTGTFVGMATQDLSGTKKPADFDYFRYKELDQ 528 >gb|AAF66622.1| xylosidase/arabinofuranosidase [Azospirillum irakense] Length = 542 Score = 540 bits (1391), Expect = e-152, Method: Compositional matrix adjust. Identities = 281/537 (52%), Positives = 356/537 (66%), Gaps = 21/537 (3%) Query: 5 LIQNPILRGFHPDPSICRAGEDYYIATSTFEWFPGVRIHHSRDLVHWRMLTHALTRKSQL 64 +I+NPIL GF+PDPSI R G DYYIATSTFEWFPGV+IHHSRDLVHWR+LT L R+SQL Sbjct: 1 MIRNPILPGFNPDPSIVRVGADYYIATSTFEWFPGVQIHHSRDLVHWRLLTRPLRRESQL 60 Query: 65 DMEGDLDSGGVWAPCLSYDNGIFYLIYTDVK---------SRQGAFKDTPNYLVTARNIE 115 +M G DS GVWAPCL++ +G+F+LIYTDVK + + +D NYLVT I+ Sbjct: 61 NMLGAPDSCGVWAPCLTHADGLFHLIYTDVKRYGRTSVGGASGASLRDFHNYLVTCDRID 120 Query: 116 GPWSEPVYLNSSGFDPSLFHDSDGRKWLVNMRWDHRTDKNSFAGIVLQEYSAELERLIGP 175 G WS+PV+LNSSGFDPSLFHD DGRK+L+NM WDHR N FAGIVLQEYS + L+G Sbjct: 121 GEWSDPVFLNSSGFDPSLFHDEDGRKYLLNMLWDHRPGHNRFAGIVLQEYSPQARALVGE 180 Query: 176 VFPIYKGTALGLTEGPHLYRKDGWYYLITAEGGTQYNHAVTVARSRNIEGPYETAPHNPL 235 I+ GTALGLTE PHLY++DGWYYL+TAEGGT +NHAVT+ARSR+I+GPYE P + Sbjct: 181 RRVIFPGTALGLTEAPHLYKRDGWYYLLTAEGGTGWNHAVTMARSRSIDGPYELHPDTHI 240 Query: 236 LTSAGNSELELQKAGHGCLVHTHTDEWYMVHLCGRPVKEK-YCNLGRETAIQRCVFTEEA 294 LTS + LQ+AGH LV T E Y V+LCGRP+ + C LGRETAIQR V+ ++ Sbjct: 241 LTSFNRPDAPLQRAGHADLVETAEGETYAVYLCGRPLPNRGRCVLGRETAIQRMVWGDDG 300 Query: 295 WLALADGTNRPSVTVEGPDIPAHPFPAVAERDDFDAPELDVRWSTLRVPADESWLSLKER 354 WL DG PS+T P +PAHPFP R DFD P L + + L P E SL R Sbjct: 301 WLRTMDGQGLPSLTTPSPGLPAHPFPTAPARSDFDDPSLPLDFQWLPSPHPEELFSLFAR 360 Query: 355 QGFLRLRGRESMSSLHRQSLVALRQQAFCCSAETELEFEPEHFQQMAGLIVYYDTKDYVY 414 G+LRL GRE++ S RQ+LVA RQQAFC S T ++F P HFQQMAGL+ YY + Y Sbjct: 361 PGWLRLYGRETIGSQFRQALVARRQQAFCVSVATFMDFHPRHFQQMAGLVCYYGGSKFHY 420 Query: 415 LRITHDEVLGKCLGIVRSV-DGVYDDSICAQIPLLPGASCRLKVLIERESAQ---FYYSV 470 L ++HDE G+ + ++ ++ D D+ IP+ G ++ + S F + + Sbjct: 421 LYVSHDEARGRHIRVMSALPDSTQADAFTEMIPIPEG-----PIICGQSSTMNGCFAFRL 475 Query: 471 GSTLWEKIGPSLDIYHLSDDF--PAYIRFTGTFIGMCAQDLSGTFHAADFDYFEYKE 525 W + D LSD+ P FTG FIGM QD++G+ +ADFD+F+Y+E Sbjct: 476 PDGDWVWLPRIFDASILSDEATSPGAPNFTGAFIGMACQDMAGSGVSADFDWFDYQE 532 >ref|NP_419805.1| xylan 1,4-beta-xylosidase [Caulobacter crescentus CB15] pir||A87372 xylan 1,4-beta-xylosidase [imported] - Caulobacter crescentus gb|AAK22973.1| xylan 1,4-beta-xylosidase [Caulobacter crescentus CB15] Length = 546 Score = 531 bits (1368), Expect = e-149, Method: Compositional matrix adjust. Identities = 276/538 (51%), Positives = 350/538 (65%), Gaps = 14/538 (2%) Query: 1 MSRSLIQNPILRGFHPDPSICRAGEDYYIATSTFEWFPGVRIHHSRDLVHWRMLTHALTR 60 MS+ LI+NP+LRGF+PDPSI R GEDYYIATSTFEWFPGV+IHHSRDL +WR++ L R Sbjct: 1 MSKDLIRNPVLRGFNPDPSIVRVGEDYYIATSTFEWFPGVQIHHSRDLRNWRLIGRPLRR 60 Query: 61 KSQLDMEGDLDSGGVWAPCLSYDNGIFYLIYTDVK---------SRQGAFKDTPNYLVTA 111 SQL+M GD D GVWAPCL++ +G F+LI+TDVK + + +D NYLVT Sbjct: 61 PSQLNMMGDPDGCGVWAPCLTHADGRFWLIFTDVKRYGRTTVGGASGASLRDFHNYLVTC 120 Query: 112 RNIEGPWSEPVYLNSSGFDPSLFHDSDGRKWLVNMRWDHRTDKNSFAGIVLQEYSAELER 171 I+G WS+P++LNSSGFDPSLFHD DGRKWLVN WDHR +N FAGIVLQ +S +R Sbjct: 121 ETIDGDWSDPIHLNSSGFDPSLFHDDDGRKWLVNQLWDHRPGRNRFAGIVLQAFSVAEQR 180 Query: 172 LIGPVFPIYKGTALGLTEGPHLYRKDGWYYLITAEGGTQYNHAVTVARSRNIEGPYETAP 231 L+G I++GTA+GLTE PHLY++DGWYYL+TAEGGT + HA T+ARSR I+GPYE P Sbjct: 181 LVGERKVIFEGTAIGLTEAPHLYKRDGWYYLLTAEGGTGWGHAATLARSRAIDGPYELHP 240 Query: 232 HNPLLTSAGNSELELQKAGHGCLVHTHTDEWYMVHLCGRPVKEK-YCNLGRETAIQRCVF 290 LLT+ LQ+AGHG L T E Y+ +LCGRP+ + C LGRETAIQ+ + Sbjct: 241 DTYLLTARDRPHAPLQRAGHGDLFETADGETYIAYLCGRPLPGRGRCVLGRETAIQKLTW 300 Query: 291 TEEAWLALADGTNRPSVTVEGPDIPAHPFPAVAERDDFDAPELDVRWSTLRVPADESWLS 350 + W DG+ P++ G + P+P R+DFD L + + LR P E+ S Sbjct: 301 GADGWPRTLDGSGDPTLETPGAGLVDQPWPTTPVREDFDGTTLPIDFQWLRTPYPETIFS 360 Query: 351 LKERQGFLRLRGRESMSSLHRQSLVALRQQAFCCSAETELEFEPEHFQQMAGLIVYYDTK 410 L R GFLRL GRES+ S+ Q+LVA RQQA C SA T L+FEP HFQQ AGL+ YY+ Sbjct: 361 LTARPGFLRLYGRESLGSVFTQALVARRQQAHCYSAATRLDFEPAHFQQAAGLVCYYNGS 420 Query: 411 DYVYLRITHDEVLGKCLGIVRSV-DGVYDDSICAQIPLLPGASCRLKVLIERESAQFYYS 469 YL +THD+ GK L ++ D DS A IPL G L+V ++ E +F + Sbjct: 421 KLHYLHVTHDDEAGKHLRVMTCTPDSPQADSFTAPIPLGAG-PVDLRVEVDFERLRFGFR 479 Query: 470 VGSTLWEKIGPSLDIYHLSDD--FPAYIRFTGTFIGMCAQDLSGTFHAADFDYFEYKE 525 W + D LSD+ P FTG F+GM QD+SG AADFD+F+Y+E Sbjct: 480 QAGGDWRWLPEVFDASILSDEATAPGAPNFTGAFVGMACQDMSGMATAADFDWFDYQE 537 >ref|NP_694047.1| xylan 1,4-beta-xylosidase [Oceanobacillus iheyensis HTE831] dbj|BAC15081.1| xylan 1,4-beta-xylosidase (beta xylosidase) (EC 3.2.1.37) [Oceanobacillus iheyensis HTE831] Length = 536 Score = 530 bits (1364), Expect = e-149, Method: Compositional matrix adjust. Identities = 274/535 (51%), Positives = 362/535 (67%), Gaps = 21/535 (3%) Query: 6 IQNPILRGFHPDPSICRAGEDYYIATSTFEWFPGVRIHHSRDLVHWRMLTHALTRKSQLD 65 I+NPIL GF+PDPSICRAGEDYYIA STFEWFPGV I+HSRDL +W++++ L R SQL+ Sbjct: 4 IKNPILTGFNPDPSICRAGEDYYIAVSTFEWFPGVGIYHSRDLKNWKLVSRPLNRLSQLN 63 Query: 66 MEGDLDSGGVWAPCLSYDNGIFYLIYTDVKSRQGAFKDTPNYLVTARNIEGPWSEPVYLN 125 M G+ +SGGVWAP LSY +G F+LIYTDVK G +KD NYLVT +I+G WSEP+YLN Sbjct: 64 MMGNPNSGGVWAPALSYKDGKFWLIYTDVKVTGGQWKDCHNYLVTCNSIDGEWSEPIYLN 123 Query: 126 SSGFDPSLFHDSDGRKWLVNMRWDHRTDKNSFAGIVLQEYSAELERLIGPVFPIYKGTAL 185 SSGFDPSLFHD DG+K+LVNM WD R + F GIVLQEY + +L+G I+KGT + Sbjct: 124 SSGFDPSLFHDEDGKKYLVNMVWDSRISTHPFYGIVLQEYDSVKGKLVGKKEIIFKGTDV 183 Query: 186 GLTEGPHLYRKDGWYYLITAEGGTQYNHAVTVARSRNIEGPYETAPHNPLLTSAGNSELE 245 LTE PHLY+ + +YYL+TAEGGT+Y+H T+ARS+N+ GPYE P NPL++S + Sbjct: 184 KLTEAPHLYKINDYYYLLTAEGGTRYDHQATIARSKNLHGPYEVHPDNPLISSHSHPRNP 243 Query: 246 LQKAGHGCLVHTHTDEWYMVHLCGRPVKEK---------YCNLGRETAIQRCVFTEEAWL 296 LQKAGH +V THTDEW+MVHL GRP+ ++ YC LGRETAIQR + E W Sbjct: 244 LQKAGHASIVQTHTDEWFMVHLTGRPLPKENQPILDPRGYCPLGRETAIQRLEWKNE-WP 302 Query: 297 ALADGTNRPSVTVEGPDIPAHPFPA-VAERDDFDAPELDVRWSTLRVPADESWLSLKERQ 355 + G N+PS+ +EGP IP ++ DDFD EL++ + TLR+P +E+ +L ER Sbjct: 303 YVVGG-NQPSMEIEGPKIPESSADVQLSGIDDFDENELNLNYQTLRIPLNENIKTLTERP 361 Query: 356 GFLRLRGRESMSSLHRQSLVALRQQAFCCSAETELEFEPEHFQQMAGLIVYYDTKDYVYL 415 G LRL GRES++S Q+ VA R Q F +AET+++F+P FQQ AGL+ YY+T+++ L Sbjct: 362 GHLRLYGRESLTSTFTQAFVARRWQHFAFTAETKVDFQPTSFQQGAGLVNYYNTENWSAL 421 Query: 416 RITHDEVLGKCLGIVRSVDGVYDDSICAQIPLLPG--ASCRLKVLIERESAQFYYSVGST 473 +IT DE GK L + + ++ + ++ +P LKV++ + Q++YS Sbjct: 422 QITWDEQKGKVLSLTTCDNFKFEQPLLSKEIEIPDEQGDVYLKVVVNYNNYQYFYSFNGN 481 Query: 474 LWEKIGPSLDIYHLSDDFPAYIR----FTGTFIGMCAQDLSGTFHAADFDYFEYK 524 W I +L Y LSDD Y++ FTG F+GM QD SG ADFDYF Y+ Sbjct: 482 DWIAIPITLQSYKLSDD---YVKGGGFFTGAFVGMQCQDTSGEGIHADFDYFYYQ 533 >ref|NP_389640.1| xylan beta-1,4-xylosidase [Bacillus subtilis] pir||G69735 xylan 1,4-beta-xylosidase (EC 3.2.1.37) xynB - Bacillus subtilis gb|AAB41091.1| xylan beta-1,4-xylosidase [Bacillus subtilis] emb|CAB13642.1| xylan beta-1,4-xylosidase [Bacillus subtilis subsp. subtilis str. 168] Length = 533 Score = 524 bits (1350), Expect = e-147, Method: Compositional matrix adjust. Identities = 276/536 (51%), Positives = 355/536 (66%), Gaps = 22/536 (4%) Query: 6 IQNPILRGFHPDPSICRAGEDYYIATSTFEWFPGVRIHHSRDLVHWRMLTHALTRKSQLD 65 I NP+L+GF+PDPSICRAGEDYYIA STFEWFPGV+IHHS+DLV+W ++ H L R SQLD Sbjct: 3 ITNPVLKGFNPDPSICRAGEDYYIAVSTFEWFPGVQIHHSKDLVNWHLVAHPLQRVSQLD 62 Query: 66 MEGDLDSGGVWAPCLSYDNGIFYLIYTDVKSRQGAFKDTPNYLVTARNIEGPWSEPVYLN 125 M+G+ +SGGVWAPCLSY +G F+LIYTDVK GA+KD NYLVT I G WSEP+ LN Sbjct: 63 MKGNPNSGGVWAPCLSYSDGKFWLIYTDVKVVDGAWKDCHNYLVTCETINGDWSEPIKLN 122 Query: 126 SSGFDPSLFHDSDGRKWLVNMRWDHRTDKNSFAGIVLQEYSAELERLIGPVFPIYKGTAL 185 SSGFD SLFHD+DG+K+L+NM WDHR D++SF GIV+QEYS + ++LIG I++GT Sbjct: 123 SSGFDASLFHDTDGKKYLLNMLWDHRIDRHSFGGIVIQEYSDKEQKLIGKPKVIFEGTDR 182 Query: 186 GLTEGPHLYRKDGWYYLITAEGGTQYNHAVTVARSRNIEGPYETAPHNPLLTSAGNSELE 245 LTE PHLY +YYL+TAEGGT+Y HA T+ARS NIEGPYE P NP+LTS + Sbjct: 183 KLTEAPHLYHIGNYYYLLTAEGGTRYEHAATIARSANIEGPYEVHPDNPILTSWHDPGNP 242 Query: 246 LQKAGHGCLVHTHTDEWYMVHLCGRPV---------KEKYCNLGRETAIQRCVFTEEAWL 296 LQK GH +V THTDEWY+ HL GRP+ + YC LGRETAIQ+ + +E W Sbjct: 243 LQKCGHASIVQTHTDEWYLAHLTGRPIHPDDDSIFQQRGYCPLGRETAIQKLYWKDE-WP 301 Query: 297 ALADGTNRPSVTVEGPDIPAHPFPAV-AERDDFDAPELDVRWSTLRVPADESWLSLKERQ 355 + G S+ V+ P IP F A E D+F+ L++ + TLR+P SL + Sbjct: 302 YVVGG-KEGSLEVDAPSIPETIFEATYPEVDEFEDSTLNINFQTLRIPFTNELGSLTQAP 360 Query: 356 GFLRLRGRESMSSLHRQSLVALRQQAFCCSAETELEFEPEHFQQMAGLIVYYDTKDYVYL 415 LRL G ES++S Q+ VA R Q+ AET +EF PE+FQQ AGL+ YY+T+++ L Sbjct: 361 NHLRLFGHESLTSTFTQAFVARRWQSLHFEAETAVEFYPENFQQAAGLVNYYNTENWTAL 420 Query: 416 RITHDEVLGKCLGIVRSVDGVYDDSICAQIPLLPG--ASCRLKVLIERESAQFYYSVGST 473 ++THDE LG+ L + + + + +I ++P L+V IE++ ++YS Sbjct: 421 QVTHDEELGRILELTICDNFSFSQPLNNKI-VIPREVKYVYLRVNIEKDKYYYFYSFNKE 479 Query: 474 LWEKIGPSLDIYHLSDDFPAYIR----FTGTFIGMCAQDLSGTFHAADFDYFEYKE 525 W KI +L+ LSDD YIR FTG F+GM QD G ADF YF YKE Sbjct: 480 DWHKIDIALESKKLSDD---YIRGGGFFTGAFVGMQCQDTGGNHIPADFRYFRYKE 532 Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF Posted date: Mar 24, 2004 1:53 AM Number of letters in database: 757,237,578 Number of sequences in database: 2,715,099 Lambda K H 0.321 0.138 0.440 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 2715099 Number of Hits to DB: 861,848,737 Number of extensions: 37815029 Number of successful extensions: 67154 Number of sequences better than 1.0e-05: 98 Number of HSP's gapped: 66833 Number of HSP's successfully gapped: 101 Length of query: 528 Length of database: 757,237,578 Length adjustment: 130 Effective length of query: 398 Effective length of database: 404,274,708 Effective search space: 160901333784 Effective search space used: 160901333784 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 128 (53.9 bits)