BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0346.0064.p (208 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF 2,715,099 sequences; 757,237,578 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|NP_830780.1| hypothetical protein [Bacillus cereus ATCC 1457... 208 8e-53 ref|NP_977397.1| conserved hypothetical protein [Bacillus cereus... 206 3e-52 ref|NP_654912.1| hypothetical protein predicted by GeneMark [Bac... 203 2e-51 ref|NP_736422.1| Unknown [Streptococcus agalactiae NEM316] >gi|2... 123 3e-27 ref|NP_689017.1| hypothetical protein [Streptococcus agalactiae ... 122 5e-27 >ref|NP_830780.1| hypothetical protein [Bacillus cereus ATCC 14579] gb|AAP07981.1| hypothetical protein [Bacillus cereus ATCC 14579] Length = 203 Score = 208 bits (529), Expect = 8e-53, Method: Compositional matrix adjust. Identities = 99/200 (49%), Positives = 138/200 (69%) Query: 1 MRKFKFFLNFDQEEKWLNHMARQGWEFVGKSICYHFQKAEPEDAVIKMDYRPFSRKADFE 60 M + KFFL+F++EEKWL MA +G++ + Y F+ EPEDA IK+D+R FSRK+DF Sbjct: 2 MWRLKFFLDFEKEEKWLEEMAWKGYQLESTTFGYTFRYTEPEDATIKIDHRVFSRKSDFI 61 Query: 61 DYRALFEDSGWKHIQGSKSSGYQYFRKVSGQGSEDIFSDADSKAGRYKRLSKMWLSISVA 120 +Y LFEDSGW+HI G++ SG YF+KV+ + +DIFSD S+AG+YKRLSK +L +++ Sbjct: 62 NYCTLFEDSGWEHIAGNRWSGTYYFKKVNEESEDDIFSDPMSRAGKYKRLSKTFLELAIC 121 Query: 121 YFPVCVALGTTGTFKPSALLNPEAFYLTPGLWEKTGSSFWRAFLFETPFALFRGLGIYLL 180 Y P+ + T A +NP+ YLTPGLW+K G SF +FLFETPFAL RGL + + Sbjct: 122 YLPILFLFMYSNTMNLGAFVNPKELYLTPGLWDKQGVSFLWSFLFETPFALMRGLFLTFI 181 Query: 181 PTVIILYLFFFFKANRLYKK 200 P ++ +KANRLY++ Sbjct: 182 PVATCMFFVCSYKANRLYEE 201 >ref|NP_977397.1| conserved hypothetical protein [Bacillus cereus ATCC 10987] gb|AAS40005.1| conserved hypothetical protein [Bacillus cereus ATCC 10987] Length = 202 Score = 206 bits (524), Expect = 3e-52, Method: Compositional matrix adjust. Identities = 99/200 (49%), Positives = 135/200 (67%) Query: 1 MRKFKFFLNFDQEEKWLNHMARQGWEFVGKSICYHFQKAEPEDAVIKMDYRPFSRKADFE 60 M + KFFL+F++EEKWL MA +G++ + Y F+ EPEDA IK+D+R FSRK+DF Sbjct: 1 MWRLKFFLDFEKEEKWLEEMAWKGYQLESNTFGYTFRYTEPEDATIKIDHRVFSRKSDFM 60 Query: 61 DYRALFEDSGWKHIQGSKSSGYQYFRKVSGQGSEDIFSDADSKAGRYKRLSKMWLSISVA 120 +Y LFEDSGW+HI G+ SG YF+KV + +DIFSD S+AG+YKRLSK +L +++ Sbjct: 61 NYCTLFEDSGWEHIAGNWWSGTHYFKKVDEESEDDIFSDQMSRAGKYKRLSKTFLELAIC 120 Query: 121 YFPVCVALGTTGTFKPSALLNPEAFYLTPGLWEKTGSSFWRAFLFETPFALFRGLGIYLL 180 P+ + T AL NP+ Y TPGLW+K G SF +FLFETP AL RG + Sbjct: 121 SIPILILFMFNDTIHLGALANPKELYFTPGLWDKQGVSFLWSFLFETPLALMRGFAWLFI 180 Query: 181 PTVIILYLFFFFKANRLYKK 200 PT I++YL +KA+RLY++ Sbjct: 181 PTAIVMYLICSYKAHRLYEE 200 >ref|NP_654912.1| hypothetical protein predicted by GeneMark [Bacillus anthracis A2012] ref|NP_843484.1| conserved hypothetical protein [Bacillus anthracis str. Ames] gb|AAP24970.1| conserved hypothetical protein [Bacillus anthracis str. Ames] Length = 202 Score = 203 bits (516), Expect = 2e-51, Method: Compositional matrix adjust. Identities = 98/200 (49%), Positives = 136/200 (68%) Query: 1 MRKFKFFLNFDQEEKWLNHMARQGWEFVGKSICYHFQKAEPEDAVIKMDYRPFSRKADFE 60 M + KFFL+F++EEKWL MA +G++ + Y F+ EPEDA I++D+R FSRK++F Sbjct: 1 MWRLKFFLDFEKEEKWLEEMAWKGYQLESNTFGYTFRYTEPEDATIRIDHRVFSRKSEFI 60 Query: 61 DYRALFEDSGWKHIQGSKSSGYQYFRKVSGQGSEDIFSDADSKAGRYKRLSKMWLSISVA 120 +Y LFEDSGW+HI G+ SG YF+KV+ + +DIFSD S+AG+YKRLSK +L +++ Sbjct: 61 NYCTLFEDSGWEHIAGNWWSGTHYFKKVNEESEDDIFSDQMSRAGKYKRLSKTFLELAMC 120 Query: 121 YFPVCVALGTTGTFKPSALLNPEAFYLTPGLWEKTGSSFWRAFLFETPFALFRGLGIYLL 180 P+ + T AL N + Y TPGLW+K G SF +FLFETPFAL RGL + Sbjct: 121 SIPILILFMFNDTIHLGALANSKELYFTPGLWDKQGVSFLWSFLFETPFALMRGLAWLFI 180 Query: 181 PTVIILYLFFFFKANRLYKK 200 P I++YL +KANRLY++ Sbjct: 181 PAAIVMYLVCSYKANRLYEE 200 >ref|NP_736422.1| Unknown [Streptococcus agalactiae NEM316] emb|CAD47648.1| Unknown [Streptococcus agalactiae NEM316] Length = 202 Score = 123 bits (308), Expect = 3e-27, Method: Compositional matrix adjust. Identities = 73/194 (37%), Positives = 111/194 (57%), Gaps = 9/194 (4%) Query: 1 MRKFK-FFLNFDQEEKWLNHMARQGWEFVGKS----ICYHFQKAEPEDAV-IKMDYRPFS 54 M KFK FF + ++EE+W++ + + G+ F G + Y+F++ + +D + IKMD++ + Sbjct: 1 MIKFKLFFKSTEKEEEWIDKVQKSGYAFTGINSFLPAFYYFKRDKEKDKMSIKMDFKKYM 60 Query: 55 RKADFEDYRALFEDSGWKHIQGSKSSGYQYFRKVSGQGSEDIFSDADSKAGRYKRLSKMW 114 K D+ +Y LFEDSGWKHI GS+ G YF+K+ + S +IFSD +SK+ K Sbjct: 61 SKDDYANYITLFEDSGWKHISGSRWGGLHYFQKIKPEASSEIFSDQESKSAMAMSYYKYT 120 Query: 115 LSISVAYFPVCVALGTTGTFKPSALLNPEAFYLTPGLWEKTGSSFWRAFLFETPFALFRG 174 + L T + + +P+++YLT GLWE G FW AFLFETPFAL R Sbjct: 121 CEHAFFSLFYFFLLIRTTSI---TIFDPKSWYLTQGLWEMQGKIFWLAFLFETPFALLRI 177 Query: 175 LGIYLLPTVIILYL 188 L ++ I Y+ Sbjct: 178 LPMFYFLISGIYYI 191 >ref|NP_689017.1| hypothetical protein [Streptococcus agalactiae 2603V/R] gb|AAN00890.1| hypothetical protein [Streptococcus agalactiae 2603V/R] Length = 202 Score = 122 bits (306), Expect = 5e-27, Method: Compositional matrix adjust. Identities = 73/194 (37%), Positives = 111/194 (57%), Gaps = 9/194 (4%) Query: 1 MRKFK-FFLNFDQEEKWLNHMARQGWEFVGKS----ICYHFQKAEPEDAV-IKMDYRPFS 54 M KFK FF + ++EE+W++ + + G+ F G + Y+F++ + +D + IKMD++ + Sbjct: 1 MIKFKLFFKSTEKEEEWIDKVQKSGYAFTGINSFLPAFYYFKRDKEKDKMSIKMDFKKYM 60 Query: 55 RKADFEDYRALFEDSGWKHIQGSKSSGYQYFRKVSGQGSEDIFSDADSKAGRYKRLSKMW 114 K D+ +Y LFEDSGWKHI GS+ G YF+K+ + S +IFSD +SK+ K Sbjct: 61 SKDDYANYITLFEDSGWKHISGSRWGGLHYFQKIKPETSSEIFSDQESKSAMAMSYYKYT 120 Query: 115 LSISVAYFPVCVALGTTGTFKPSALLNPEAFYLTPGLWEKTGSSFWRAFLFETPFALFRG 174 + L T + + +P+++YLT GLWE G FW AFLFETPFAL R Sbjct: 121 CEHAFFSLFYFFLLIRTTSI---TIFDPKSWYLTQGLWEMQGKIFWLAFLFETPFALLRI 177 Query: 175 LGIYLLPTVIILYL 188 L ++ I Y+ Sbjct: 178 LPMFYFLISGIYYI 191 Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF Posted date: Mar 24, 2004 1:53 AM Number of letters in database: 757,237,578 Number of sequences in database: 2,715,099 Lambda K H 0.326 0.141 0.452 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 2715099 Number of Hits to DB: 336,629,700 Number of extensions: 14023896 Number of successful extensions: 40101 Number of sequences better than 1.0e-05: 10 Number of HSP's gapped: 40089 Number of HSP's successfully gapped: 10 Length of query: 208 Length of database: 757,237,578 Length adjustment: 120 Effective length of query: 88 Effective length of database: 431,425,698 Effective search space: 37965461424 Effective search space used: 37965461424 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 15 ( 7.1 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (21.6 bits) S2: 123 (52.0 bits)