BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0346.0060.p
         (139 letters)

Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF 
           2,715,099 sequences; 757,237,578 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|NP_349208.1| Predicted membrane protein [Clostridium acetobu...    93   2e-18

>ref|NP_349208.1| Predicted membrane protein [Clostridium acetobutylicum]
 pir||A97220 probable membrane protein [imported] - Clostridium acetobutylicum
 gb|AAK80548.1| Predicted membrane protein [Clostridium acetobutylicum]
          Length = 418

 Score = 93.2 bits (230), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 49/140 (35%), Positives = 80/140 (57%), Gaps = 1/140 (0%)

Query: 1   VYVELAILALEQDGFGRESIAAVPMEPITRSISLSESICRAEGVSVIDMAAILGTIFAVL 60
           VY+ELAI A+E  G  +E I ++PM+       L +SI  ++G+S+ D+ +IL  I  + 
Sbjct: 277 VYLELAITAIEMKGIKKERIMSIPMDKKGEERMLFDSIQSSDGLSLFDLPSILAVIGGIF 336

Query: 61  GASFGFELRWGPIPWGLIGLALGVCASLILFLIAGKGLK-PTAAGTKAVVMLIILCEQGD 119
           G+ +GF L+WGPI WGLIG+    C   ++ LI  +  +       ++ V+LII C+   
Sbjct: 337 GSIYGFVLKWGPILWGLIGIVSCSCVGFVIKLIVTRKYRDEQKCSERSEVVLIIECDDSK 396

Query: 120 SHKAIEILKQFSAISIGKLD 139
                +IL + +A+ + KLD
Sbjct: 397 VEMVKDILWKNNALGVRKLD 416


  Database: All non-redundant GenBank CDS
  translations+PDB+SwissProt+PIR+PRF
    Posted date:  Mar 24, 2004  1:53 AM
  Number of letters in database: 757,237,578
  Number of sequences in database:  2,715,099
  
Lambda     K      H
   0.324    0.141    0.411 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 2715099
Number of Hits to DB: 179,929,625
Number of extensions: 6468068
Number of successful extensions: 26443
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 26442
Number of HSP's successfully gapped: 1
Length of query: 139
Length of database: 757,237,578
Length adjustment: 100
Effective length of query: 39
Effective length of database: 485,727,678
Effective search space: 18943379442
Effective search space used: 18943379442
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.5 bits)
S2: 120 (50.8 bits)