BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0346.0052.p (285 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF 2,715,099 sequences; 757,237,578 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value emb|CAA61936.1| putative integral protein [Bacillus subtilis] 313 3e-84 ref|NP_390751.1| integral membrane protein [Bacillus subtilis] >... 309 4e-83 ref|NP_241769.1| L-arabinose transport system (permease) [Bacill... 297 2e-79 ref|NP_637560.1| ABC transporter sugar permease [Xanthomonas cam... 174 3e-42 ref|NP_622454.1| Sugar permeases [Thermoanaerobacter tengcongens... 173 5e-42 >emb|CAA61936.1| putative integral protein [Bacillus subtilis] Length = 281 Score = 313 bits (801), Expect = 3e-84, Method: Compositional matrix adjust. Identities = 145/254 (57%), Positives = 197/254 (77%), Gaps = 3/254 (1%) Query: 32 YALFLASLKPATELFRYGLNVRLDFNLMSLDNYKSIFSGLGAAGNYFGWYKNXXXXXXXX 91 + L L SLKP++EL R GLN+ +D +MS DNY +F+G YF W+ N Sbjct: 31 FCLLLGSLKPSSELLRVGLNLDIDPKVMSFDNYTFLFNG---GSIYFKWFFNSLVLGLFT 87 Query: 92 XXXXXXXXXMVGYGLGMYRFRGRNLIFTLVLVVMMIPVEIILLPLYKLMISLKLINTIWG 151 M+GYGL +Y F+GRN+IF LVL++MM+P+E+++LPL+KL + L LI++ G Sbjct: 88 TVLTLFFSSMIGYGLAVYDFKGRNIIFVLVLIIMMVPLEVMMLPLFKLTVGLHLIDSYTG 147 Query: 152 VILPFIVAPLPIFFFRQFALGLPKDFMDAGRIDGCSEYGIFFKIMVPLMAPAFGAITILQ 211 VILPFIV+P+ +FFFRQ+ALGLP+D +D+ R+DGC+E+GIFF+IM PLM PAFGA+ ILQ Sbjct: 148 VILPFIVSPVAVFFFRQYALGLPRDLLDSARMDGCTEFGIFFRIMAPLMKPAFGAMIILQ 207 Query: 212 AMNSWNNFLWPLIVLRTTEQFTLPIGLASFVSPLGNNYEALIAGAVLAILPILVLFLFFQ 271 ++NSWNNFLWPLIVLR+ E FTLPIGL+S +SP GNNY+ LI+G+V AILP++++FLFFQ Sbjct: 208 SLNSWNNFLWPLIVLRSKEMFTLPIGLSSLLSPYGNNYDMLISGSVFAILPVIIIFLFFQ 267 Query: 272 RFFMEGLTVGGIKG 285 ++F+ GLTVGG+KG Sbjct: 268 KYFISGLTVGGVKG 281 >ref|NP_390751.1| integral membrane protein [Bacillus subtilis] sp|P94530|ARAQ_BACSU L-arabinose transport system permease protein araQ pir||C69588 L-arabinose transport (integral membrane protein) araQ - Bacillus subtilis emb|CAA99594.1| hypothetical protein [Bacillus subtilis] emb|CAB14833.1| integral membrane protein [Bacillus subtilis subsp. subtilis str. 168] Length = 281 Score = 309 bits (792), Expect = 4e-83, Method: Compositional matrix adjust. Identities = 143/254 (56%), Positives = 195/254 (76%), Gaps = 3/254 (1%) Query: 32 YALFLASLKPATELFRYGLNVRLDFNLMSLDNYKSIFSGLGAAGNYFGWYKNXXXXXXXX 91 + L L SLKP++EL R GLN+ +D +MS DNY +F+G YF W+ N Sbjct: 31 FCLLLGSLKPSSELLRVGLNLDIDPKVMSFDNYTFLFNG---GSIYFKWFFNSLVLGLFT 87 Query: 92 XXXXXXXXXMVGYGLGMYRFRGRNLIFTLVLVVMMIPVEIILLPLYKLMISLKLINTIWG 151 M+GYGL +Y F+GRN+IF LVL++MM+P+E+++LPL+KL + L LI++ G Sbjct: 88 TVLTLFFSSMIGYGLAVYDFKGRNIIFVLVLIIMMVPLEVMMLPLFKLTVGLHLIDSYTG 147 Query: 152 VILPFIVAPLPIFFFRQFALGLPKDFMDAGRIDGCSEYGIFFKIMVPLMAPAFGAITILQ 211 VILP I +P+ +FFFRQ+ALGLP+D +D+ R+DGC+E+GIFF+IM PLM PAFGA+ ILQ Sbjct: 148 VILPLIASPVAVFFFRQYALGLPRDLLDSARMDGCTEFGIFFRIMAPLMKPAFGAMIILQ 207 Query: 212 AMNSWNNFLWPLIVLRTTEQFTLPIGLASFVSPLGNNYEALIAGAVLAILPILVLFLFFQ 271 ++NSWNNFLWPLIVLR+ E FTLPIGL+S +SP GNNY+ LI+G+V AILP++++FLFFQ Sbjct: 208 SLNSWNNFLWPLIVLRSKEMFTLPIGLSSLLSPYGNNYDMLISGSVFAILPVIIIFLFFQ 267 Query: 272 RFFMEGLTVGGIKG 285 ++F+ GLTVGG+KG Sbjct: 268 KYFISGLTVGGVKG 281 >ref|NP_241769.1| L-arabinose transport system (permease) [Bacillus halodurans] sp|Q9KEE9|ARAQ_BACHD L-arabinose transport system permease protein araQ pir||G83762 L-arabinose transport system (permease) araQ [imported] - Bacillus halodurans (strain C-125) dbj|BAB04622.1| L-arabinose transport system (permease) [Bacillus halodurans] Length = 279 Score = 297 bits (760), Expect = 2e-79, Method: Compositional matrix adjust. Identities = 142/252 (56%), Positives = 190/252 (75%), Gaps = 3/252 (1%) Query: 34 LFLASLKPATELFRYGLNVRLDFNLMSLDNYKSIFSGLGAAGNYFGWYKNXXXXXXXXXX 93 L LAS +P+TEL R G+ + D + ++LDN+ IF+ AG Y+ W+ N Sbjct: 31 LILASFRPSTELMRNGITLIFDPSTLTLDNFIYIFT---EAGLYWTWFGNSVWISIVIVV 87 Query: 94 XXXXXXXMVGYGLGMYRFRGRNLIFTLVLVVMMIPVEIILLPLYKLMISLKLINTIWGVI 153 MVGY L +Y F+GRN F LVL+++MIP EI++LPL++LMI L+L+NT VI Sbjct: 88 LSLLFSSMVGYALAVYDFKGRNFFFLLVLIILMIPFEILMLPLFQLMIKLQLVNTYTAVI 147 Query: 154 LPFIVAPLPIFFFRQFALGLPKDFMDAGRIDGCSEYGIFFKIMVPLMAPAFGAITILQAM 213 LP IVAP+ +FFFRQ+ALGLPK+ MDA RIDGC+EYGIFFKIM+PLM P+ A+ ILQ + Sbjct: 148 LPAIVAPIAVFFFRQYALGLPKELMDAARIDGCTEYGIFFKIMLPLMGPSLAAMAILQGL 207 Query: 214 NSWNNFLWPLIVLRTTEQFTLPIGLASFVSPLGNNYEALIAGAVLAILPILVLFLFFQRF 273 NSWNNFLWPL+VLR+ + FTLPIGLA+ ++P GNNY+ L+AG+V+ I+PI++LF+FFQR+ Sbjct: 208 NSWNNFLWPLVVLRSNDMFTLPIGLATLLTPYGNNYDILLAGSVMTIVPIVILFIFFQRY 267 Query: 274 FMEGLTVGGIKG 285 F+ GLTVGG+KG Sbjct: 268 FIAGLTVGGVKG 279 >ref|NP_637560.1| ABC transporter sugar permease [Xanthomonas campestris pv. campestris str. ATCC 33913] gb|AAM41484.1| ABC transporter sugar permease [Xanthomonas campestris pv. campestris str. ATCC 33913] Length = 278 Score = 174 bits (440), Expect = 3e-42, Method: Compositional matrix adjust. Identities = 86/226 (38%), Positives = 134/226 (59%), Gaps = 4/226 (1%) Query: 60 SLDNYKSIFSGLGAAGNYFGWYKNXXXXXXXXXXXXXXXXXMVGYGLGMYRFRGRNLIFT 119 +L NY +F+ G A N+ N M GY +F GR IF Sbjct: 57 TLANYHELFARTGMARNF----ANSLMVSGLITLGSLLINTMAGYAFAKLQFIGRERIFK 112 Query: 120 LVLVVMMIPVEIILLPLYKLMISLKLINTIWGVILPFIVAPLPIFFFRQFALGLPKDFMD 179 +++ ++IP ++ +LPL+ LM L L+N I GV++P + IF RQ+A +P + ++ Sbjct: 113 ILMAALVIPAQVAMLPLFLLMKQLHLVNNIGGVVVPALATVFGIFLVRQYARSIPDELIE 172 Query: 180 AGRIDGCSEYGIFFKIMVPLMAPAFGAITILQAMNSWNNFLWPLIVLRTTEQFTLPIGLA 239 A RIDG SE IFF+I++P++ P +TI M SWN+F+WPLIVL EQ+TLP+ LA Sbjct: 173 AARIDGASEMRIFFQIVLPMLKPVLVTLTIFTFMGSWNDFMWPLIVLTDQEQYTLPVALA 232 Query: 240 SFVSPLGNNYEALIAGAVLAILPILVLFLFFQRFFMEGLTVGGIKG 285 + + E ++AGAV+ ++P+L+LFL QR++++GL +G +KG Sbjct: 233 ALSREHIMDVELMMAGAVVTVIPVLLLFLALQRYYIQGLLLGSVKG 278 >ref|NP_622454.1| Sugar permeases [Thermoanaerobacter tengcongensis] gb|AAM24058.1| Sugar permeases [Thermoanaerobacter tengcongensis] Length = 269 Score = 173 bits (438), Expect = 5e-42, Method: Compositional matrix adjust. Identities = 92/249 (36%), Positives = 141/249 (56%), Gaps = 8/249 (3%) Query: 36 LASLKPATELFRYGLNVRLDFNLMSLDNYKSIFSGLGAAGNYFGWYKNXXXXXXXXXXXX 95 + SLKP +EL + +N++ ++LDNYK I + + W+ N Sbjct: 29 ITSLKPTSELNTFAVNIKH----LTLDNYKMIITKFP----FLRWFINSAIVAAIVTFGN 80 Query: 96 XXXXXMVGYGLGMYRFRGRNLIFTLVLVVMMIPVEIILLPLYKLMISLKLINTIWGVILP 155 M GY L F GRN +F LVL +MMIP +++++P Y L+ L +NT G+ +P Sbjct: 81 MLFNSMAGYALARINFPGRNFLFLLVLALMMIPGQVVMVPTYILLSKLGWVNTYMGLTIP 140 Query: 156 FIVAPLPIFFFRQFALGLPKDFMDAGRIDGCSEYGIFFKIMVPLMAPAFGAITILQAMNS 215 F+ + IF RQF L +P++ +A IDG S +GIFFKI++PL PA I + Sbjct: 141 FLTSNFGIFLMRQFFLTIPRELEEAATIDGMSRFGIFFKIVLPLAKPALATQFIFMFTGN 200 Query: 216 WNNFLWPLIVLRTTEQFTLPIGLASFVSPLGNNYEALIAGAVLAILPILVLFLFFQRFFM 275 WN+FLWP ++ + + +TLP+GL SF + ++AGA+L LP +V+FL FQR+F+ Sbjct: 201 WNSFLWPSLLTSSDDMYTLPVGLNSFYGQYYQFWNQVMAGAILLTLPTIVIFLIFQRYFV 260 Query: 276 EGLTVGGIK 284 G+ G+K Sbjct: 261 RGIATTGLK 269 Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF Posted date: Mar 24, 2004 1:53 AM Number of letters in database: 757,237,578 Number of sequences in database: 2,715,099 Lambda K H 0.332 0.148 0.459 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 2715099 Number of Hits to DB: 345,756,480 Number of extensions: 13413360 Number of successful extensions: 46165 Number of sequences better than 1.0e-05: 1321 Number of HSP's gapped: 44747 Number of HSP's successfully gapped: 1321 Length of query: 285 Length of database: 757,237,578 Length adjustment: 124 Effective length of query: 161 Effective length of database: 420,565,302 Effective search space: 67711013622 Effective search space used: 67711013622 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 15 ( 7.2 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (21.9 bits) S2: 125 (52.8 bits)