BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0346.0050.p (1015 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF 2,715,099 sequences; 757,237,578 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|NP_768727.1| bll2087 [Bradyrhizobium japonicum] >gi|12620786... 242 3e-62 gb|EAA52610.1| hypothetical protein MG05302.4 [Magnaporthe grise... 122 4e-26 ref|NP_695622.1| narrowly conserved hypothetical protein possibl... 73 4e-11 ref|NP_642849.1| conserved hypothetical protein [Xanthomonas axo... 65 9e-09 pir||T17479 hypothetical protein PCZA361.13 - Amycolatopsis orie... 64 2e-08 >ref|NP_768727.1| bll2087 [Bradyrhizobium japonicum] gb|AAG61062.1| ID880 [Bradyrhizobium japonicum] dbj|BAC47352.1| bll2087 [Bradyrhizobium japonicum USDA 110] Length = 936 Score = 242 bits (618), Expect = 3e-62, Method: Compositional matrix adjust. Identities = 218/822 (26%), Positives = 353/822 (42%), Gaps = 95/822 (11%) Query: 31 ISSLKIKGDAFPTEYVMNKTVSPEQDTADHQWLGELLFTYRLDGGEWIKASTNQSGDVRI 90 I+SL+ + DA+ T+YV+ V LG R G EW T Sbjct: 92 ITSLRYRNDAYDTDYVLPGAV-----------LGTAHARVRRAGSEWHTLRTG------- 133 Query: 91 IDKDGSKVTVTYENSANAGGIHHFKLVETYTMEADGSLQWDIHVANISGKSLEFGDIGLP 150 +D + E +A G+ L+ T + L W+I + N S+E GD+ P Sbjct: 134 VDATKPMHSAALELAARDAGV----LLTTRLAVDEAGLTWEIMLRNDGMASVEVGDLYFP 189 Query: 151 LPFNEQWTYGDAIYETRVVTHSFVGGSGSYITAGRPSGIGSYLMLMPDAVTGAGFEYQDR 210 +P N ++ G V+ HSFV G GS+I R + G +LML+P+A T EY D Sbjct: 190 MPMNTEFPAGQPA-SVAVLKHSFVSGHGSHIFWIRGNSTGPFLMLLPEADTS--LEYWDV 246 Query: 211 WRNEEHPGSKWAWNPDNEGKWIEGLNVFYIHSNVIKSTNRGYLPHTSLILAAGESKTYGF 270 ++ + + G W + + + R P SL L+ E + Y Sbjct: 247 HKD----------SAEASGTWCAYILGGAAAGEAVAAGTRWRQPTHSLSLSPAEQRRYRL 296 Query: 271 KLFAVANEQEAKDRLYQEGLIDVTVVPGMIVPINQKAKFDLRTKADIHSVKLDDGTD--V 328 + VAN + A+ + GL+DV V+PGM VP + L + + ++ + D V Sbjct: 297 RFQWVANYESARRAIADAGLVDVEVMPGMTVPNDLHVDIALASSIPVERIEAEFTGDTVV 356 Query: 329 PLLEQKSGDHHIYEFSLGKLGPQHVTVHYGSGLTTVLQFYGIDAVDRALEDHATFMVEQT 388 L ++G ++ +LG +T+H T L+F + V+ ++ ATF+V++ Sbjct: 357 QRLPDRAG-RRLWRVRFSRLGENRLTLHQPGARQTFLEFSATEPVETMMKKRATFIVKR- 414 Query: 389 QWNLPGDIRDKVFDDWMMNTKS--KRNNFSGYWGW------GDDWGLTHGQFLAEKNALS 440 Q P D +F +W M T+ +N+ GW DD GL+ +LA KNA Sbjct: 415 QHRDPSKWYDGLFGEWNMETQVLLGPDNYDRIKGWRIYEVTCDDPGLSKPAYLATKNAEH 474 Query: 441 PVASEITAVDEYLETAIWTNLMNGHHEDYL-----IHDFLMEEPNTTP-------TYRGY 488 P +E+ A+D Y++T +W L E Y I D+ ++ P +R Y Sbjct: 475 PDVAEVAALDRYIDTFVWGGLQRTTQEAYAYGLYGIPDWKQNRESSDPGPKGRLHIWRPY 534 Query: 489 AYPHIYNTYFSMYKIASNYPELVAYKHPKETYLLRAYNILKALYEGPVSY----NWETGL 544 YPHI+ Y +M++IA ++P + + ++ YL+RAY A++ P+ + TG Sbjct: 535 DYPHIFAMYLAMHRIARDHPAIPTRQSARD-YLVRAYGTALAMFTVPMRVVMWSAYRTGF 593 Query: 545 MGELTTPDIIQALEDEGYVDEANDVRAKMLRXXXXXX-XXXXXXGSEYSYDNTGEEAVYT 603 E P+++ AL G EA + A R SEY +D+T E+ Sbjct: 594 YNECVIPELVSALTTAGLTREAATLEAHWARKVRAFVDPKADLFKSEYPFDSTAFESTQA 653 Query: 604 LAKMQKDNS----SEQAKALEMMGKINAKTRASRGQM-PVWYYYADPVTITGENWWNFQY 658 LA+ D+ +A A + A RG + P +YY T + + Y Sbjct: 654 LARSALDDPVAMGVSKAAARAFSERQIAANLFCRGWLEPAYYYLGSDYRHTAGDAYTLTY 713 Query: 659 SVSLAGYAMDDWIRYHAAANREEEQ---RLSYAAKLANLSAINSGQISDDPANYGAAAWT 715 + G+A+ D HA + ++ RL YA++L+ + +NSG PA+ G W Sbjct: 714 MAQMGGWALLD----HALNDADDPHPLLRLGYASQLSAWALLNSG-----PASAGHGYW- 763 Query: 716 YQAEKXXXXXXXXXXXRNVPLLNGWKGM---------TGEADLGLFGALQILSADIAVDP 766 Y E+ P W G + E DLG GA++ + +A DP Sbjct: 764 YPGEENDGAAGGGFE--PAPSGTTWLGQPHHRGTWYYSCEIDLGFCGAVRAAATIVADDP 821 Query: 767 IFGVTGYGADVTVTDSVYYNITPTDGLFKRINLITEKLYAEL 808 IFG +G + T + I P DG+ +R+N+ + L +L Sbjct: 822 IFGQVCHGG-IMETFAHTLRIWPRDGVRRRLNVRLQSLRLDL 862 >gb|EAA52610.1| hypothetical protein MG05302.4 [Magnaporthe grisea 70-15] Length = 638 Score = 122 bits (306), Expect = 4e-26, Method: Compositional matrix adjust. Identities = 153/616 (24%), Positives = 249/616 (40%), Gaps = 76/616 (12%) Query: 31 ISSLKIKGDAF---PTEYVMNKTVSPEQDTADHQWLGELLFTYRLDG-GEWIKASTNQSG 86 ++SLK GDAF P +Y+ + + W G++ F YR +G WI + Sbjct: 51 LASLKANGDAFDFLPFDYIGRRA-----RNGQYHW-GDVTFRYRAEGETAWIDGDSAAQR 104 Query: 87 DVRIIDKDGSKVTVTYENSANAGGIHHFKLVETYTMEADGSLQWDIHVANISGKSLEFGD 146 + + S+ T+ N A + + +E DG L + N +E G Sbjct: 105 RPVVNAESPSQDTLASSNLALTLPNSPLNITRQW-IEVDGDLGLRFIIENSGSSRIELGS 163 Query: 147 IGLPLPFNEQWTYGDAIYETRVVTHS--FVGGSGSYITAGRPSGIGSYLMLMPDAVTGAG 204 +G P FN +T A R+ + S ++G I G SG G+ L+ VT G Sbjct: 164 LGFPAEFNSIFTDRHAADMQRLCSLSDPYIGMDAGQIRVGPVSGSGAALV-----VTALG 218 Query: 205 FEYQDRWRNEEHPGSKWAWNPDNEGKWI--EGLNVFYIHSNVIKS-------TNRGYLPH 255 + +RN + GS EG W + FY + K+ + + P Sbjct: 219 STPMEAYRNLQE-GSY-------EGTWYGSQTFEGFYEWQTLSKAWAENEWRNTKPWNPA 270 Query: 256 TSLILAAGESKTYGFKLFAVANE--QEAKDRLYQEGLIDVTVVPGMIVPINQKAKFDLRT 313 +S L GES +G + F+VA E + + G+ VPG IV A+ L + Sbjct: 271 SSRSLDPGESVQFGLR-FSVAKEGVRGIDATVRAAGIPTAVGVPGFIVSSGGPAQIFLDS 329 Query: 314 KADIHSVKLDDGTDVPLLEQKSGDHHIYEFSLGKLGPQHVTVHYGSGLTTVLQFYGIDAV 373 KA++ S+ D + Q S +I S G + V Y G + +Y + Sbjct: 330 KAEVTSIT-SDPAGMFQAAQDSPRKYIITPSATAWGRVRLEVQYADGKIQTIHYYVTNQS 388 Query: 374 DRALEDHATFMVEQTQWNLPGDI--RDKVFDDWMMNTKSKRNNFSGYW--GWGDDWGLTH 429 + + D F+ + + D R + T+S S W G D+ G Sbjct: 389 TQVVTDLGHFLTTEQYYTDKYDPFGRAPSVMTYDYETRSIVEQDSRAWVAGLSDEAG--A 446 Query: 430 GQFLAE--KNALSPVASEITAVDEYLETAIWTNLMNGHHEDYLIH-DFLMEEPNTTPTY- 485 G +L+ K ++ P A E+T ++ +++ +W +L DY + EP P Y Sbjct: 447 GSYLSAFMKQSIQPNAEEVTKLEAFVDGVLWKSL---QRSDYGVKKSIFFYEPALVPGYT 503 Query: 486 ----------------------RGYAYPHIYNTYFSMYKIASNYPELVAYKHPKETYLLR 523 RGY Y H+ +Y+S Y++A YP+L+ H + YL + Sbjct: 504 YSPSLDWTSWTSWNKAGADDIGRGYNYVHVAASYWSFYRVARGYPDLIK-AHAWDWYLNQ 562 Query: 524 AYNILKALYEGPVSYNWETGLMGELTTPDIIQALEDEGYVDEANDVRAKMLRXXXXXXXX 583 AY + + V Y+ + GLMGE +I+ L EG EA+ + A M + Sbjct: 563 AYQTTIRIMKNDVFYS-DVGLMGETVFGEILTDLRREGRTSEADALSAAMKQRAAHWDTL 621 Query: 584 XXXXGSEYSYDNTGEE 599 GSE ++D+TG+E Sbjct: 622 QVPFGSEMAWDSTGQE 637 >ref|NP_695622.1| narrowly conserved hypothetical protein possibly involved in xylan degradation [Bifidobacterium longum NCC2705] gb|AAN24258.1| narrowly conserved hypothetical protein possibly involved in xylan degradation [Bifidobacterium longum NCC2705] Length = 1941 Score = 72.8 bits (177), Expect = 4e-11, Method: Compositional matrix adjust. Identities = 50/120 (41%), Positives = 62/120 (51%), Gaps = 10/120 (8%) Query: 873 LTIEAGPAV------AYTVELSATEPDENQAPAVDAGADFTYTLQVDDAMLRGKAKDDGL 926 T +AG AV AY + A ENQ P VDA + + A L G KDDGL Sbjct: 1029 FTPQAGMAVGVKEIEAYNTGIKADGTSENQTPQVDA---YVSSSTSSGAKLVGTVKDDGL 1085 Query: 927 P-QGTLNPEWTLVSGPEDGEAVFGNSAALLTSFTATKPGTYVFKLAVSDSELEGSDTVAV 985 P +G + W+ VSGPE G A F +++A T+ T K G YV KL SD E EGS + V Sbjct: 1086 PAEGDVTTTWSQVSGPEGGTAKFVDASAASTTVTFNKEGDYVLKLTASDGEKEGSKEITV 1145 >ref|NP_642849.1| conserved hypothetical protein [Xanthomonas axonopodis pv. citri str. 306] gb|AAM37385.1| conserved hypothetical protein [Xanthomonas axonopodis pv. citri str. 306] Length = 1452 Score = 65.1 bits (157), Expect = 9e-09, Method: Compositional matrix adjust. Identities = 32/72 (44%), Positives = 43/72 (59%) Query: 916 MLRGKAKDDGLPQGTLNPEWTLVSGPEDGEAVFGNSAALLTSFTATKPGTYVFKLAVSDS 975 +++G+ DDGLP GTL W + PE G+AVF ++AAL TS T+ G Y +LA +D Sbjct: 1058 VVQGRVGDDGLPNGTLQVRWRVQQAPEGGDAVFADAAALQTSVRFTRAGQYTLRLAANDG 1117 Query: 976 ELEGSDTVAVTA 987 L G V V A Sbjct: 1118 ALMGHADVQVNA 1129 >pir||T17479 hypothetical protein PCZA361.13 - Amycolatopsis orientalis emb|CAA11770.1| PCZA361.13 [Amycolatopsis orientalis] Length = 1336 Score = 63.9 bits (154), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 44/94 (46%), Positives = 51/94 (54%), Gaps = 7/94 (7%) Query: 895 NQAPAVDAGADFTYTLQVDDAMLRGKAKDDGLPQGTLNPEWTLVSGPEDGEAVFG--NSA 952 N AP V A D + Q A L GK KDD LP GTL W+ V+GP G VFG NSA Sbjct: 946 NTAPYVLARRDPAFN-QPGQARLLGKVKDDTLPSGTLTSTWSKVNGP--GNVVFGTPNSA 1002 Query: 953 ALLTSFTATKPGTYVFKLAVSDSELEGSDTVAVT 986 L SF+AT GTY +L SD + S V +T Sbjct: 1003 TTLASFSAT--GTYTLRLTASDGAVSSSSQVTLT 1034 Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF Posted date: Mar 24, 2004 1:53 AM Number of letters in database: 757,237,578 Number of sequences in database: 2,715,099 Lambda K H 0.314 0.133 0.398 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 2715099 Number of Hits to DB: 1,544,997,896 Number of extensions: 68032178 Number of successful extensions: 113363 Number of sequences better than 1.0e-05: 8 Number of HSP's gapped: 113391 Number of HSP's successfully gapped: 9 Length of query: 1015 Length of database: 757,237,578 Length adjustment: 136 Effective length of query: 879 Effective length of database: 387,984,114 Effective search space: 341038036206 Effective search space used: 341038036206 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 42 (22.0 bits) S2: 131 (55.1 bits)