BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0346.0046.p (321 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF 2,715,099 sequences; 757,237,578 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|ZP_00035411.1| COG1175: ABC-type sugar transport systems, pe... 210 4e-53 ref|NP_464293.1| similar to putative sugar ABC transporter, perm... 206 8e-52 ref|NP_357485.1| AGR_L_3390p [Agrobacterium tumefaciens] >gi|252... 206 8e-52 ref|NP_384222.1| PUTATIVE TRANSPORT SYSTEM PERMEASE ABC TRANSPOR... 206 8e-52 ref|NP_470102.1| similar to putative sugar ABC transporter, perm... 205 1e-51 >ref|ZP_00035411.1| COG1175: ABC-type sugar transport systems, permease components [Enterococcus faecium] Length = 295 Score = 210 bits (534), Expect = 4e-53, Method: Compositional matrix adjust. Identities = 116/296 (39%), Positives = 176/296 (59%), Gaps = 4/296 (1%) Query: 18 VRRSRRRPHAAKELRYGLLFASPVLAGYLLFVLVPIATSIYLSFTNYSVGMVPEWIGIGN 77 +++ + + ++ G +FASP + G+LL ++P+ S+Y SFT+Y +G WIG+ N Sbjct: 1 MKKEKLKRFLDQDNVVGYVFASPFILGFLLITVIPMILSLYYSFTDYRLGNPVSWIGLDN 60 Query: 78 YKTLFTGADPFFYPAVKATFYYVFASVPLGIIISFFAAVLLNQKIVGRAFFRGIFYLPVI 137 Y + + D F +++ TF YVFASVP+ +I A LL + I G FFR ++Y+P + Sbjct: 61 YIKMLS--DARFLNSIRVTFLYVFASVPVKLIFGLLIAYLLTRNIKGTTFFRSLYYVPSL 118 Query: 138 IPLAAS-SMVWMWLLQPDFGIVNYMLEQLHLPTSQWLGDTGSVVPTLILFSFWTLGNTIV 196 I + S ++VW L + G+VN LE+L P W D V+ L+L S W G+ ++ Sbjct: 119 IGGSISIALVWRELFSKN-GLVNIFLERLGAPALSWFSDQKLVMIPLVLMSAWQFGSAMI 177 Query: 197 IFLAGLQGIPSQLYEAIEIDGGNRLHKLFYITIPMTSSIIFFNTVIAFINGFQAFVQPSV 256 IF AG++ IP YEA EIDG N+ + IT+P+ S II +N V+ I F F Q + Sbjct: 178 IFAAGIKEIPGSYYEAAEIDGANKWQTFYKITLPLLSPIILYNLVMQTIAAFMTFTQAFI 237 Query: 257 MTQGGPNNKSLFYVLYLFNEGFKSSRMGSASAISVLLFLVIALFTALIFFFSKSLV 312 +TQGGPN+ + FY LY++N+ F + MG ASAIS ++ L++ T LIF SK V Sbjct: 238 ITQGGPNDATNFYALYVYNQAFSFNSMGYASAISWIMLLIMGDVTFLIFKSSKKWV 293 >ref|NP_464293.1| similar to putative sugar ABC transporter, permease protein [Listeria monocytogenes EGD-e] pir||AF1170 probable sugar ABC transporter, permease protein homolog lmo0766 [imported] - Listeria monocytogenes (strain EGD-e) emb|CAC98844.1| lmo0766 [Listeria monocytogenes] Length = 296 Score = 206 bits (523), Expect = 8e-52, Method: Compositional matrix adjust. Identities = 113/282 (40%), Positives = 167/282 (59%), Gaps = 5/282 (1%) Query: 22 RRRPHAAKELRYGLLF-ASPVLAGYLLFVLVPIATSIYLSFTNYSVGMVPEWIGIGNYKT 80 R + + R LF A PVL +F+++PI ++++SFT+Y + P WIG NY Sbjct: 5 RNKSAQIHQQRMAYLFIALPVLL-LAIFMILPIGMALFVSFTDYDIVNSPNWIGFDNYIK 63 Query: 81 LFTGADPFFYPAVKATFYYVFASVPLGIIISFFAAVLLNQKIVGRAFFRGIFYLPVIIPL 140 +F DP+F ++K T Y VPLG++ S AA+L+N G FR FY+PV+ Sbjct: 64 MFR--DPYFLISLKNTIIYTALFVPLGLVASLGAAILINMNKKGAGLFRTFFYVPVLCST 121 Query: 141 AASSMVWMWLLQPDFGIVNYMLEQLHLPTSQWLGDTGSVVPTLILFSFW-TLGNTIVIFL 199 A++ +W WLL P +G++N +L + WL D+ + +++ S W T G ++IFL Sbjct: 122 VATATIWYWLLNPQYGLINRVLGWFGINGPAWLYDSNWAMFAIVMMSVWMTFGTNMMIFL 181 Query: 200 AGLQGIPSQLYEAIEIDGGNRLHKLFYITIPMTSSIIFFNTVIAFINGFQAFVQPSVMTQ 259 AGLQGIP+ LYEA +I+G +R Y+T P S F T + IN FQ F Q V+T+ Sbjct: 182 AGLQGIPANLYEASKIEGASRWKTFRYVTWPSLSRTTFLVTTMLIINAFQVFDQAYVLTK 241 Query: 260 GGPNNKSLFYVLYLFNEGFKSSRMGSASAISVLLFLVIALFT 301 GGP N ++ V Y++NEGF +MG ASAIS +LFL+I +F+ Sbjct: 242 GGPGNSTITLVYYIYNEGFGGLKMGYASAISFVLFLIILVFS 283 >ref|NP_357485.1| AGR_L_3390p [Agrobacterium tumefaciens] pir||D98343 lactose transport system (permease) (AP001511) [imported] - Agrobacterium tumefaciens (strain C58, Cereon) gb|AAK90270.1| AGR_L_3390p [Agrobacterium tumefaciens str. C58 (Cereon)] Length = 309 Score = 206 bits (523), Expect = 8e-52, Method: Compositional matrix adjust. Identities = 124/314 (39%), Positives = 182/314 (57%), Gaps = 13/314 (4%) Query: 6 DRAAGVPQTLKPVRRSRRRPHAAKELRYGLLFASPVLAGYLLFVLVPIATSIYLSFTNYS 65 R A +P+ R R HA LF P L G+ L P S+YLSFTNY Sbjct: 4 SRGAALPKRGGMRRMFDRNIHA-------YLFLLPWLIGFFGLTLGPALASLYLSFTNYD 56 Query: 66 VGMVPEWIGIGNYKTLFTGADPFFYPAVKATFYYVFASVPLGIIISFFAAVLLNQKIVGR 125 + P+W+G NY + T ADP F A++ TF YV SVPL +I + A+ N+ I G Sbjct: 57 LLQSPDWVGAANYVRIAT-ADPKFAAAMQVTFTYVLLSVPLKLIFALLVALAFNRGIRGL 115 Query: 126 AFFRGIFYLPVIIPLA-ASSMVWMWLLQPDFGIVNYMLEQ-LHLPTSQWLGDTGSVVPTL 183 +R IFYLP ++ + A +++W L D G+VN +L Q W+ + + TL Sbjct: 116 TLYRAIFYLPSLLGSSVAIAVLWRQLFASD-GLVNMILWQAFGYEGPSWISNPDYSIYTL 174 Query: 184 ILFSFWTLGNTIVIFLAGLQGIPSQLYEAIEIDGGNRLHKLFYITIPMTSSIIFFNTVIA 243 ++ S W G+ ++IFLAGL+ IP +YEA EIDG +++ + F IT+P+ + +IFFN VI Sbjct: 175 VILSVWQFGSPMIIFLAGLRQIPQDMYEAAEIDGASKVRQFFRITLPLLTPVIFFNAVIQ 234 Query: 244 FINGFQAFVQPSVMTQ--GGPNNKSLFYVLYLFNEGFKSSRMGSASAISVLLFLVIALFT 301 I+ F+AF ++++ GGP N +LFY LYL+ E F RMG ASA++ +L ++I+LFT Sbjct: 235 TIDAFKAFTPAFIISEGTGGPINSTLFYTLYLYQEAFGFFRMGYASALAWILVIIISLFT 294 Query: 302 ALIFFFSKSLVYYE 315 A F +K V+Y+ Sbjct: 295 AFSFLSAKYWVHYD 308 >ref|NP_384222.1| PUTATIVE TRANSPORT SYSTEM PERMEASE ABC TRANSPORTER PROTEIN [Sinorhizobium meliloti] emb|CAC41503.1| PUTATIVE TRANSPORT SYSTEM PERMEASE ABC TRANSPORTER PROTEIN [Sinorhizobium meliloti] Length = 315 Score = 206 bits (523), Expect = 8e-52, Method: Compositional matrix adjust. Identities = 119/311 (38%), Positives = 180/311 (57%), Gaps = 6/311 (1%) Query: 8 AAGVPQTLKPVRRSRRRPHAAKELRYGLLFASPVLAGYLLFVLVPIATSIYLSFTNYSVG 67 A G + +P + R A G +F P L G+ L P S+YLSFTN+ + Sbjct: 7 AVGTGASSRPAAQGRLARIWASH-GAGYMFLLPWLIGFFGLTLGPAIASLYLSFTNFDLI 65 Query: 68 MVPEWIGIGNYKTLFTGADPFFYPAVKATFYYVFASVPLGIIISFFAAVLLNQKIVGRAF 127 PEWIG NY + T ADP F AVK TF YV SVP + + A+LL++ + G Sbjct: 66 RAPEWIGTANYARIAT-ADPKFAAAVKVTFLYVVLSVPFKLAFALLVAILLDRGVRGLTV 124 Query: 128 FRGIFYLPVIIPLA-ASSMVWMWLLQPDFGIVNYMLEQLHLPTSQWLGDTGSVVPTLILF 186 +R IFYLP ++ + A +++W L D G++N +L Q + W+ + TL++ Sbjct: 125 YRAIFYLPSLLGGSVAIAVLWRQLFAGD-GLINSLLAQFGIEGPSWISHPDYSIWTLVVL 183 Query: 187 SFWTLGNTIVIFLAGLQGIPSQLYEAIEIDGGNRLHKLFYITIPMTSSIIFFNTVIAFIN 246 S W G+ ++IFLAGL+ IP+ +YEA +DG ++ + + IT+P+ + +IFFN V+ I+ Sbjct: 184 SVWQFGSPMIIFLAGLRQIPTDMYEAASLDGASKFRQFYKITLPLLTPVIFFNAVVQTID 243 Query: 247 GFQAFVQPSVMT--QGGPNNKSLFYVLYLFNEGFKSSRMGSASAISVLLFLVIALFTALI 304 F+AF +++ GGP N +LFY LYL+ E F + RMG ASA++ +L L+I LFTA Sbjct: 244 AFKAFTPAFIISGGTGGPINSTLFYTLYLYQEAFGNFRMGYASALAWILVLIIGLFTAFS 303 Query: 305 FFFSKSLVYYE 315 F S+ V+Y+ Sbjct: 304 FLTSRYWVHYD 314 >ref|NP_470102.1| similar to putative sugar ABC transporter, permease protein [Listeria innocua] pir||AH1527 probable sugar ABC transporter, permease protein homolog lin0760 [imported] - Listeria innocua (strain Clip11262) emb|CAC95992.1| lin0760 [Listeria innocua] Length = 296 Score = 205 bits (521), Expect = 1e-51, Method: Compositional matrix adjust. Identities = 113/282 (40%), Positives = 167/282 (59%), Gaps = 5/282 (1%) Query: 22 RRRPHAAKELRYGLLF-ASPVLAGYLLFVLVPIATSIYLSFTNYSVGMVPEWIGIGNYKT 80 R + + R LF A PVL +F+++PI ++++SFT+Y + P WIG NY Sbjct: 5 RNKSVQIHQQRMAYLFIALPVLL-LAIFMILPIGMALFVSFTDYDIVNSPNWIGFDNYIK 63 Query: 81 LFTGADPFFYPAVKATFYYVFASVPLGIIISFFAAVLLNQKIVGRAFFRGIFYLPVIIPL 140 +F DP+F ++K T Y VPLG++ S AA+L+N G FR FY+PV+ Sbjct: 64 MFR--DPYFLISLKNTIIYTALFVPLGLVASLGAAILINMNKKGAGLFRTFFYVPVLCST 121 Query: 141 AASSMVWMWLLQPDFGIVNYMLEQLHLPTSQWLGDTGSVVPTLILFSFW-TLGNTIVIFL 199 A++ +W WLL P +G++N +L + WL D+ + +++ S W T G ++IFL Sbjct: 122 VATATIWYWLLNPQYGLINRVLGWFGINGPAWLYDSNWAMFAIVMMSVWMTFGTNMMIFL 181 Query: 200 AGLQGIPSQLYEAIEIDGGNRLHKLFYITIPMTSSIIFFNTVIAFINGFQAFVQPSVMTQ 259 AGLQGIP+ LYEA +I+G +R Y+T P S F T + IN FQ F Q V+T+ Sbjct: 182 AGLQGIPANLYEASKIEGASRWKTFRYVTWPSLSRTTFLVTTMLIINAFQVFDQAYVLTK 241 Query: 260 GGPNNKSLFYVLYLFNEGFKSSRMGSASAISVLLFLVIALFT 301 GGP N ++ V Y++NEGF +MG ASAIS +LFL+I +F+ Sbjct: 242 GGPGNSTITLVYYIYNEGFGGLKMGYASAISFVLFLIILVFS 283 Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF Posted date: Mar 24, 2004 1:53 AM Number of letters in database: 757,237,578 Number of sequences in database: 2,715,099 Lambda K H 0.329 0.144 0.439 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 2715099 Number of Hits to DB: 495,366,345 Number of extensions: 21775650 Number of successful extensions: 73505 Number of sequences better than 1.0e-05: 1345 Number of HSP's gapped: 71685 Number of HSP's successfully gapped: 1356 Length of query: 321 Length of database: 757,237,578 Length adjustment: 126 Effective length of query: 195 Effective length of database: 415,135,104 Effective search space: 80951345280 Effective search space used: 80951345280 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 15 ( 7.1 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (21.8 bits) S2: 126 (53.1 bits)