BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0346.0042.p (1157 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF 2,715,099 sequences; 757,237,578 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|NP_768727.1| bll2087 [Bradyrhizobium japonicum] >gi|12620786... 243 3e-62 ref|NP_522442.1| PUTATIVE TRANSMEMBRANE PROTEIN [Ralstonia solan... 178 9e-43 gb|EAA56619.1| hypothetical protein MG06590.4 [Magnaporthe grise... 164 1e-38 gb|EAK56253.1| unknown [environmental sequence] 160 2e-37 ref|NP_822319.1| hypothetical protein [Streptomyces avermitilis ... 153 2e-35 >ref|NP_768727.1| bll2087 [Bradyrhizobium japonicum] gb|AAG61062.1| ID880 [Bradyrhizobium japonicum] dbj|BAC47352.1| bll2087 [Bradyrhizobium japonicum USDA 110] Length = 936 Score = 243 bits (619), Expect = 3e-62, Method: Compositional matrix adjust. Identities = 213/827 (25%), Positives = 352/827 (42%), Gaps = 93/827 (11%) Query: 40 NSNFQVSTGSNGDISSLKLTGDNFPTNYVMNASNAPNQNTADHQWLGELMFTYRLNNGSW 99 +S F V +G I+SL+ D + T+YV+ + LG R W Sbjct: 80 DSPFVVGCTQDG-ITSLRYRNDAYDTDYVLPGAV-----------LGTAHARVRRAGSEW 127 Query: 100 TKAWTNKSADARTQSQSGNTVNITYQNSANTEGIRNFRVNESYSLVSDYLLWQIQVTNTS 159 T A T+ + + +++ R V+E+ L W+I + N Sbjct: 128 HTLRTGVDA---TKPMHSAALELAARDAGVLLTTR-LAVDEAG------LTWEIMLRNDG 177 Query: 160 TQTLEIGDFGLPLPFNEFWTGGGNEQIYESRVVTQSFIGNNSSYVTAQRPSGIGPSLLLV 219 ++E+GD P+P N + G Q V+ SF+ + S++ R + GP L+L+ Sbjct: 178 MASVEVGDLYFPMPMNTEFPAG---QPASVAVLKHSFVSGHGSHIFWIRGNSTGPFLMLL 234 Query: 220 PDSTTGAGFEYMDNWRIQQHPGSKWAGDQGGWIEGLSVYYIHSNVIKSTGSGYLPNSSLT 279 P++ T EY D H S A G W + + + P SL+ Sbjct: 235 PEADTS--LEYWD-----VHKDS--AEASGTWCAYILGGAAAGEAVAAGTRWRQPTHSLS 285 Query: 280 LQPGASKTYAFKFFKAASEQAVKDRLYSEGLIDTTVVPGMIVPVNQTAKFDLRTSKTITS 339 L P + Y +F A+ ++ + + GL+D V+PGM VP + L +S + Sbjct: 286 LSPAEQRRYRLRFQWVANYESARRAIADAGLVDVEVMPGMTVPNDLHVDIALASSIPVER 345 Query: 340 VTAQYPSETTVTSLGTTPGDHKLYSLQMNHLGPNNITVNYGSGEKTTLQFYAIEAVDAAL 399 + A++ +T V L G +L+ ++ + LG N +T++ +T L+F A E V+ + Sbjct: 346 IEAEFTGDTVVQRLPDRAG-RRLWRVRFSRLGENRLTLHQPGARQTFLEFSATEPVETMM 404 Query: 400 QRHATFMVNNQQWNVPGDIRDKAFDDWMMQ--------NNAKRNNFAXXXXXXXXXXXTH 451 ++ ATF+V Q + P D F +W M+ N + + + Sbjct: 405 KKRATFIVKRQHRD-PSKWYDGLFGEWNMETQVLLGPDNYDRIKGWRIYEVTCDDPGLSK 463 Query: 452 AQYLAEKNVQKPVASEITALDQYLDTTIWTNLMAGHHTDYL-----VPDFLM-------A 499 YLA KN + P +E+ ALD+Y+DT +W L Y +PD+ Sbjct: 464 PAYLATKNAEHPDVAEVAALDRYIDTFVWGGLQRTTQEAYAYGLYGIPDWKQNRESSDPG 523 Query: 500 PPNDTPTYRGYAYPHIYNTYFSMYKISKLYPGLISYKEPGNTYLLRAYNIMKALYDGPVA 559 P +R Y YPHI+ Y +M++I++ +P I ++ YL+RAY A++ P+ Sbjct: 524 PKGRLHIWRPYDYPHIFAMYLAMHRIARDHPA-IPTRQSARDYLVRAYGTALAMFTVPMR 582 Query: 560 Y----NWNTGLMGELTTPEIIKALQDEGFTAQANDIIAKMNTKYNNFAGTTYP-YGSEYN 614 + TG E PE++ AL G T +A + A K F + SEY Sbjct: 583 VVMWSAYRTGFYNECVIPELVSALTTAGLTREAATLEAHWARKVRAFVDPKADLFKSEYP 642 Query: 615 YDNTGEEAVYMLAKMKNNNAIKSKIN-TKTRA-----------VRGKM-PVWYYYTNPVT 661 +D+T E+ LA+ ++ + ++ RA RG + P +YY + Sbjct: 643 FDSTAFESTQALARSALDDPVAMGVSKAAARAFSERQIAANLFCRGWLEPAYYYLGSDYR 702 Query: 662 INGEPWWQFQYTASLAGTAMDDWVRNNSSTPEVEQRLSYAAKLANINAINSGQISSDPAD 721 + Y A + G A+ D N++ P RL YA++L+ +NSG PA Sbjct: 703 HTAGDAYTLTYMAQMGGWALLDHALNDADDPHPLLRLGYASQLSAWALLNSG-----PAS 757 Query: 722 IGAVSWTYQAMKGNNGAL--GLDGGPLFNGWRGM---------SGEADLGLFGAIKILSS 770 G W Y + N+GA G + P W G S E DLG GA++ ++ Sbjct: 758 AGHGYW-YPG-EENDGAAGGGFEPAPSGTTWLGQPHHRGTWYYSCEIDLGFCGAVRAAAT 815 Query: 771 DVAVDPIFGLYGYGCEVTESGGNYVVVPKDGVFQRLNLITEKWGMNL 817 VA DPIFG +G + + P+DGV +RLN+ + ++L Sbjct: 816 IVADDPIFGQVCHGGIMETFAHTLRIWPRDGVRRRLNVRLQSLRLDL 862 >ref|NP_522442.1| PUTATIVE TRANSMEMBRANE PROTEIN [Ralstonia solanacearum] emb|CAD18032.1| PUTATIVE TRANSMEMBRANE PROTEIN [Ralstonia solanacearum] Length = 767 Score = 178 bits (451), Expect = 9e-43, Method: Compositional matrix adjust. Identities = 106/227 (46%), Positives = 140/227 (61%), Gaps = 9/227 (3%) Query: 889 TAAAYEVKIEQGTVTPVPSIIANYKMNQTSGTAVTDSSTAGNHATVTGTPSWIAGRSGAG 948 +AA+ EVK+ VT + + ++ SGT DSS G+ T+ G +W GRSG Sbjct: 546 SAASNEVKV----VTAI-RLHTELSFSEGSGTVAADSSGNGHAGTLAGGAAWATGRSG-- 598 Query: 949 NALSLGTNAYAALPAGIVSQLNDFTISAWVRITTNNDWARIFDFGSDTTANMFLAPQTGD 1008 +A+SL AY ALPA +++ ++D T+SAWV T RIFDFGS T + L P+ G Sbjct: 599 HAVSLSVGAYVALPADLLADVSDCTLSAWVFWTAAQTNTRIFDFGSGTGHYLMLTPRHGS 658 Query: 1009 GGG-LRFAITNSGNSAEQRLTASAPLATGQWKHVAVTLSGTTGRLYVDGVQVATNTGMTL 1067 G G +R AIT +G EQ + +A L GQW HVAVTLSG+TG LYV+G V TNT M L Sbjct: 659 GAGAVRCAITVNGRFGEQSIDGTAALPAGQWVHVAVTLSGSTGTLYVNGTAVGTNTAMFL 718 Query: 1068 KPSSLGNTTQNYIGKSQY-GDPNLEGAVDDFIIYSRALSASEITSLF 1113 P LG+TTQN++G+SQY DP G +DDF I+ ALSA++I L Sbjct: 719 APFRLGSTTQNWLGRSQYSADPGFNGLIDDFRIHRGALSATQIAELM 765 >gb|EAA56619.1| hypothetical protein MG06590.4 [Magnaporthe grisea 70-15] Length = 1055 Score = 164 bits (415), Expect = 1e-38, Method: Compositional matrix adjust. Identities = 84/170 (49%), Positives = 106/170 (62%), Gaps = 4/170 (2%) Query: 948 GNALSLGTN---AYAALPAGIVSQLNDFTISAWVRITTNNDWARIFDFGSDTTANMFLAP 1004 G AL LG Y LP ++QL DFTI+ WV + W+R+FDFG D+T NMFL P Sbjct: 201 GKALRLGDTRQAGYVTLPQETINQLRDFTIATWVNLPVAQGWSRLFDFGHDSTVNMFLTP 260 Query: 1005 QTGDGG-GLRFAITNSGNSAEQRLTASAPLATGQWKHVAVTLSGTTGRLYVDGVQVATNT 1063 GD G RFAIT G+ EQR+ +A + TG+W H+AV +G TG LYV+G TN Sbjct: 261 HAGDSSSGPRFAITTGGSGQEQRINGNATIPTGEWVHIAVAQAGNTGTLYVNGEVSGTNA 320 Query: 1064 GMTLKPSSLGNTTQNYIGKSQYGDPNLEGAVDDFIIYSRALSASEITSLF 1113 MTL P L N +IG+SQYGDP L +D+F I+SRAL+A+EI SL Sbjct: 321 AMTLGPVDLDNPGNRWIGRSQYGDPLLNATLDEFHIFSRALNATEIQSLL 370 >gb|EAK56253.1| unknown [environmental sequence] Length = 757 Score = 160 bits (404), Expect = 2e-37, Method: Compositional matrix adjust. Identities = 103/233 (44%), Positives = 139/233 (59%), Gaps = 16/233 (6%) Query: 889 TAAAYEVKIEQGTVTPVPSIIANYKMNQTSGTAVTDSSTAGNHATVTGTPSWIAGRSGAG 948 +A + EVK V ++A+ ++ SG DSS G + T+ G +W AGRSG Sbjct: 531 SAPSNEVK-----VITAQQLLAHLTFDEGSGVTAADSSGNGRNGTLNGA-TWAAGRSG-- 582 Query: 949 NALSL-GTNAYAALPAGIVSQLNDFTISAWVRITTNNDWARIFDFGSDTTANMFLAP--Q 1005 NA+SL G+ AY ALP +++ ++DFTI++WV WAR+FDFG+ M P Q Sbjct: 583 NAVSLNGSGAYVALPGDLLADVSDFTIASWVFWNGAQTWARLFDFGTGFHRYMMFTPRAQ 642 Query: 1006 TGDG-GGLRFAITNSG---NSAEQRLTASAPLATGQWKHVAVTLSGTTGRLYVDGVQVAT 1061 +G G+RFA+T +G EQ + A L + +W HVAVTLSG+TG +YVDG V+T Sbjct: 643 LRNGWAGMRFAMTANGPGDGPPEQIIDAPTELPSKRWVHVAVTLSGSTGTIYVDGTPVST 702 Query: 1062 NTGMTLKPSSLGNTTQNYIGKSQY-GDPNLEGAVDDFIIYSRALSASEITSLF 1113 NT M P LG TTQN++GKSQY D G +DDF IY ALSA++I SL Sbjct: 703 NTAMFQAPFRLGPTTQNWLGKSQYSADATFHGLIDDFRIYRGALSAAQIASLM 755 >ref|NP_822319.1| hypothetical protein [Streptomyces avermitilis MA-4680] dbj|BAC68854.1| hypothetical protein [Streptomyces avermitilis MA-4680] Length = 854 Score = 153 bits (387), Expect = 2e-35, Method: Compositional matrix adjust. Identities = 91/214 (42%), Positives = 131/214 (61%), Gaps = 8/214 (3%) Query: 903 TPVPSIIANYKMNQTSGTAVTDSSTAGNHATVTGTPSWIAGRSGA-GNALSL-GTNAYAA 960 +P P A ++ ++T+G+ D++ G A ++G SW A SG G A+SL G + + A Sbjct: 643 SPPPEFAAWHRFDETTGSTAADATGNGRTARLSGGTSWSA--SGHDGGAVSLDGADGHVA 700 Query: 961 LPAGIVSQLNDFTISAWVRITTN-NDWARIFDFGSDTTANMFLAPQTGDGGGLRFAITNS 1019 L +++ +++ WVR+ N W+RIFD G+ TANMFL P +G G LR+AIT Sbjct: 701 LADDLLAGAAAHSLATWVRLDGNPGTWSRIFDIGTGVTANMFLTPLSGSGT-LRYAITAG 759 Query: 1020 GNSAEQRLTASAPLATGQWKHVAVTLSGTTGRLYVDGVQVATNTGMTLKPSSLGNTTQ-N 1078 G EQR+ A PL TG+W HVAVT T LYVDG + N +T++P GN + Sbjct: 760 GAGGEQRIDAE-PLPTGRWVHVAVTYGSGTAVLYVDGTEAGRNVNVTVEPRHFGNHLRAG 818 Query: 1079 YIGKSQYGDPNLEGAVDDFIIYSRALSASEITSL 1112 Y+G+SQY DP L+GA+DDF +Y R L+A+E+ SL Sbjct: 819 YLGRSQYADPYLKGALDDFRVYGRTLTATEVASL 852 Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF Posted date: Mar 24, 2004 1:53 AM Number of letters in database: 757,237,578 Number of sequences in database: 2,715,099 Lambda K H 0.313 0.129 0.384 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 2715099 Number of Hits to DB: 1,759,309,118 Number of extensions: 76862358 Number of successful extensions: 156641 Number of sequences better than 1.0e-05: 40 Number of HSP's gapped: 156691 Number of HSP's successfully gapped: 48 Length of query: 1157 Length of database: 757,237,578 Length adjustment: 137 Effective length of query: 1020 Effective length of database: 385,269,015 Effective search space: 392974395300 Effective search space used: 392974395300 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.2 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 42 (21.9 bits) S2: 132 (55.5 bits)