BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0346.0033.p
         (74 letters)

Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF 
           2,715,099 sequences; 757,237,578 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|NP_389755.1| similar to transcriptional regulator [Bacillus ...   140   7e-33
ref|NP_831946.1| Transcriptional regulator, Cro/CI family [Bacil...   131   4e-30
ref|NP_349163.1| Predicted transcriptional regulator CRO family ...   131   5e-30
ref|NP_656871.1| HTH_XRE, Helix-turn-helix XRE-family like prote...   131   5e-30
ref|NP_979343.1| DNA-binding protein [Bacillus cereus ATCC 10987...   131   6e-30

>ref|NP_389755.1| similar to transcriptional regulator [Bacillus subtilis]
 pir||C69931 transcription regulator homolog yozG - Bacillus subtilis
 emb|CAB13766.1| yozG [Bacillus subtilis subsp. subtilis str. 168]
          Length = 84

 Score =  140 bits (354), Expect = 7e-33,   Method: Compositional matrix adjust.
 Identities = 69/71 (97%), Positives = 71/71 (100%)

Query: 4  MAIIINIDVMLAKRKMSVTELSERVGITMANLSILKNGKAKAVRLSTLEAICKALECQPG 63
          MAIIINIDVMLAKRKMSVTELSERVGITMANLSILKNGKAKA+RLSTLEAICKALECQPG
Sbjct: 1  MAIIINIDVMLAKRKMSVTELSERVGITMANLSILKNGKAKAIRLSTLEAICKALECQPG 60

Query: 64 DILEYRSDEET 74
          DILEYRSDE+T
Sbjct: 61 DILEYRSDEDT 71


>ref|NP_831946.1| Transcriptional regulator, Cro/CI family [Bacillus cereus ATCC
          14579]
 gb|AAP09147.1| Transcriptional regulator, Cro/CI family [Bacillus cereus ATCC
          14579]
          Length = 75

 Score =  131 bits (330), Expect = 4e-30,   Method: Compositional matrix adjust.
 Identities = 64/71 (90%), Positives = 67/71 (94%)

Query: 4  MAIIINIDVMLAKRKMSVTELSERVGITMANLSILKNGKAKAVRLSTLEAICKALECQPG 63
          M IIINIDVMLAKRKMSVTELSE+VGITMANLSILKN KAKAVR STLEAICKALECQPG
Sbjct: 4  MTIIINIDVMLAKRKMSVTELSEKVGITMANLSILKNAKAKAVRFSTLEAICKALECQPG 63

Query: 64 DILEYRSDEET 74
          DILEY++DE T
Sbjct: 64 DILEYKNDENT 74


>ref|NP_349163.1| Predicted transcriptional regulator CRO family [Clostridium
          acetobutylicum]
 pir||D97214 probable transcription regulator CRO family [imported] -
          Clostridium acetobutylicum
 gb|AAK80503.1| Predicted transcriptional regulator CRO family [Clostridium
          acetobutylicum]
          Length = 71

 Score =  131 bits (329), Expect = 5e-30,   Method: Compositional matrix adjust.
 Identities = 63/71 (88%), Positives = 69/71 (97%)

Query: 4  MAIIINIDVMLAKRKMSVTELSERVGITMANLSILKNGKAKAVRLSTLEAICKALECQPG 63
          MAIIINIDVMLAKRKMSVTEL+++VGITMANLSILKNGKAKA+RLSTLEAICKALECQPG
Sbjct: 1  MAIIINIDVMLAKRKMSVTELTDKVGITMANLSILKNGKAKAIRLSTLEAICKALECQPG 60

Query: 64 DILEYRSDEET 74
          DILEY+ D +T
Sbjct: 61 DILEYKRDSDT 71


>ref|NP_656871.1| HTH_XRE, Helix-turn-helix XRE-family like proteins [Bacillus
          anthracis A2012]
 ref|NP_845335.1| DNA-binding protein [Bacillus anthracis str. Ames]
 gb|AAP26821.1| DNA-binding protein [Bacillus anthracis str. Ames]
          Length = 71

 Score =  131 bits (329), Expect = 5e-30,   Method: Compositional matrix adjust.
 Identities = 64/69 (92%), Positives = 67/69 (97%)

Query: 4  MAIIINIDVMLAKRKMSVTELSERVGITMANLSILKNGKAKAVRLSTLEAICKALECQPG 63
          MAIIINIDVMLAKRKMSVTELSE+VGITMANLSILKNGKAKAVR STLEAICKALECQPG
Sbjct: 1  MAIIINIDVMLAKRKMSVTELSEKVGITMANLSILKNGKAKAVRFSTLEAICKALECQPG 60

Query: 64 DILEYRSDE 72
          DILEY+ +E
Sbjct: 61 DILEYQPEE 69


>ref|NP_979343.1| DNA-binding protein [Bacillus cereus ATCC 10987]
 gb|AAS41951.1| DNA-binding protein [Bacillus cereus ATCC 10987]
          Length = 71

 Score =  131 bits (329), Expect = 6e-30,   Method: Compositional matrix adjust.
 Identities = 64/69 (92%), Positives = 67/69 (97%)

Query: 4  MAIIINIDVMLAKRKMSVTELSERVGITMANLSILKNGKAKAVRLSTLEAICKALECQPG 63
          MAIIINIDVMLAKRKMSVTELSE+VGITMANLSILKNGKAKAVR STLEAICKALECQPG
Sbjct: 1  MAIIINIDVMLAKRKMSVTELSEKVGITMANLSILKNGKAKAVRFSTLEAICKALECQPG 60

Query: 64 DILEYRSDE 72
          DILEYR ++
Sbjct: 61 DILEYRPED 69


  Database: All non-redundant GenBank CDS
  translations+PDB+SwissProt+PIR+PRF
    Posted date:  Mar 24, 2004  1:53 AM
  Number of letters in database: 757,237,578
  Number of sequences in database:  2,715,099
  
Lambda     K      H
   0.317    0.131    0.341 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 2715099
Number of Hits to DB: 83,293,355
Number of extensions: 2135365
Number of successful extensions: 7171
Number of sequences better than 1.0e-05: 38
Number of HSP's gapped: 7184
Number of HSP's successfully gapped: 38
Length of query: 74
Length of database: 757,237,578
Length adjustment: 44
Effective length of query: 30
Effective length of database: 637,773,222
Effective search space: 19133196660
Effective search space used: 19133196660
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 120 (50.8 bits)