BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0346.0032.p (163 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF 2,715,099 sequences; 757,237,578 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|NP_656870.1| hypothetical protein predicted by GeneMark [Bac... 206 2e-52 ref|NP_979342.1| conserved hypothetical protein [Bacillus cereus... 205 3e-52 ref|NP_832733.1| hypothetical Membrane Spanning Protein [Bacillu... 199 2e-50 ref|NP_389754.1| yoaS [Bacillus subtilis] >gi|7475213|pir||D6989... 194 9e-49 ref|NP_831945.1| hypothetical protein [Bacillus cereus ATCC 1457... 181 6e-45 >ref|NP_656870.1| hypothetical protein predicted by GeneMark [Bacillus anthracis A2012] ref|NP_845334.1| conserved hypothetical protein [Bacillus anthracis str. Ames] gb|AAP26820.1| conserved hypothetical protein [Bacillus anthracis str. Ames] Length = 160 Score = 206 bits (523), Expect = 2e-52, Method: Compositional matrix adjust. Identities = 111/160 (69%), Positives = 132/160 (82%) Query: 4 MQRGTTLFLKAAVILMGIPVLALCIFAVPAIADFAAELYPDMTFIKYLVFIDLYASAVPF 63 M++G+TLFLK AVILMGIPVLA+CIF VP I +FAAELYP+M +IKYLVFI+LYA+A+P+ Sbjct: 1 MKQGSTLFLKTAVILMGIPVLAMCIFLVPNIGNFAAELYPEMAYIKYLVFINLYATAIPY 60 Query: 64 YIALYQAFRLLGYIDRNKAFSELSVRVLKNIKYCAIVISGLYVAGLPLFYLMAEKDDAPG 123 Y ALYQ F+LL YID+N AFSELSV+ LKNIKY A+ IS LYV G+PLFYL+AE+DDAPG Sbjct: 61 YFALYQTFKLLNYIDKNNAFSELSVKALKNIKYSALAISVLYVLGMPLFYLVAERDDAPG 120 Query: 124 IIVIGLVIIFASLVIAVFAAVXXXXXXXXXXXXXXNDLTV 163 IIVIG++IIFAS+VIAVFAAV NDLTV Sbjct: 121 IIVIGMIIIFASMVIAVFAAVLQRLLKDAIDIKSENDLTV 160 >ref|NP_979342.1| conserved hypothetical protein [Bacillus cereus ATCC 10987] gb|AAS41950.1| conserved hypothetical protein [Bacillus cereus ATCC 10987] Length = 160 Score = 205 bits (521), Expect = 3e-52, Method: Compositional matrix adjust. Identities = 109/160 (68%), Positives = 132/160 (82%) Query: 4 MQRGTTLFLKAAVILMGIPVLALCIFAVPAIADFAAELYPDMTFIKYLVFIDLYASAVPF 63 M++G+TLFLK AVILMGIPVLA+CIF VP I +FAAELYPD+ +IKYLVFI+LYA+A+P+ Sbjct: 1 MKQGSTLFLKTAVILMGIPVLAMCIFLVPKIGNFAAELYPDIAYIKYLVFINLYATAIPY 60 Query: 64 YIALYQAFRLLGYIDRNKAFSELSVRVLKNIKYCAIVISGLYVAGLPLFYLMAEKDDAPG 123 Y ALYQ F+LL YID+N AFSELSV+ LKNIKY A+ IS LYV G+PLFYL+AE+DDAPG Sbjct: 61 YFALYQTFKLLNYIDKNNAFSELSVKSLKNIKYSALAISVLYVLGMPLFYLVAERDDAPG 120 Query: 124 IIVIGLVIIFASLVIAVFAAVXXXXXXXXXXXXXXNDLTV 163 II+IG+++IFAS+VIAVFAAV NDLTV Sbjct: 121 IIIIGMIMIFASMVIAVFAAVLQRLLKDAIDIKSENDLTV 160 >ref|NP_832733.1| hypothetical Membrane Spanning Protein [Bacillus cereus ATCC 14579] gb|AAP09934.1| hypothetical Membrane Spanning Protein [Bacillus cereus ATCC 14579] Length = 160 Score = 199 bits (506), Expect = 2e-50, Method: Compositional matrix adjust. Identities = 107/160 (66%), Positives = 130/160 (81%) Query: 4 MQRGTTLFLKAAVILMGIPVLALCIFAVPAIADFAAELYPDMTFIKYLVFIDLYASAVPF 63 M++G+TLFLK VIL+GIPVLA+CIF VP I FAAELYPD+ +IKYLVFI+LYA+A+P+ Sbjct: 1 MKQGSTLFLKTVVILIGIPVLAMCIFLVPKIGAFAAELYPDIAYIKYLVFINLYATAIPY 60 Query: 64 YIALYQAFRLLGYIDRNKAFSELSVRVLKNIKYCAIVISGLYVAGLPLFYLMAEKDDAPG 123 Y ALYQ F+LL YID+N AFSELSV+ LKNIKY A+ IS LYV G+PLFYL+AE+DDAPG Sbjct: 61 YFALYQTFKLLNYIDKNNAFSELSVQALKNIKYSALAISVLYVLGMPLFYLVAERDDAPG 120 Query: 124 IIVIGLVIIFASLVIAVFAAVXXXXXXXXXXXXXXNDLTV 163 II+IG+++IFAS+VIAVFAAV NDLTV Sbjct: 121 IIIIGMIMIFASMVIAVFAAVLQRLLKDAIDIKSENDLTV 160 >ref|NP_389754.1| yoaS [Bacillus subtilis] pir||D69897 hypothetical protein yoaS - Bacillus subtilis emb|CAB13765.1| yoaS [Bacillus subtilis subsp. subtilis str. 168] Length = 160 Score = 194 bits (492), Expect = 9e-49, Method: Compositional matrix adjust. Identities = 107/160 (66%), Positives = 129/160 (80%) Query: 4 MQRGTTLFLKAAVILMGIPVLALCIFAVPAIADFAAELYPDMTFIKYLVFIDLYASAVPF 63 M R +T+FLK A++L+GIP+LALCIF VP +A+++AEL+P++ +IKYLVFI LY +A+PF Sbjct: 1 MNRMSTIFLKIALVLIGIPILALCIFLVPKVANYSAELFPNIAYIKYLVFIYLYVTAIPF 60 Query: 64 YIALYQAFRLLGYIDRNKAFSELSVRVLKNIKYCAIVISGLYVAGLPLFYLMAEKDDAPG 123 Y ALYQAF+LL YID+NKAFS LSVR LKNIKYCA+ IS Y AG+P+FYLMAE DDAPG Sbjct: 61 YFALYQAFKLLSYIDKNKAFSGLSVRALKNIKYCAVTISIFYAAGMPVFYLMAEIDDAPG 120 Query: 124 IIVIGLVIIFASLVIAVFAAVXXXXXXXXXXXXXXNDLTV 163 IIVIGLVIIFAS+VIAVFAAV NDLTV Sbjct: 121 IIVIGLVIIFASMVIAVFAAVLQKLLKEAIDIKSENDLTV 160 >ref|NP_831945.1| hypothetical protein [Bacillus cereus ATCC 14579] gb|AAP09146.1| hypothetical protein [Bacillus cereus ATCC 14579] Length = 161 Score = 181 bits (458), Expect = 6e-45, Method: Compositional matrix adjust. Identities = 96/160 (60%), Positives = 116/160 (72%), Gaps = 1/160 (0%) Query: 4 MQRGTTLFLKAAVILMGIPVLALCIFAVPAIADFAAELYPDMTFIKYLVFIDLYASAVPF 63 ++R +T+FLK + L GI VLALCIF VP +ADF A LYP++ IKYLVFI +Y +AVPF Sbjct: 3 LKRSSTMFLKVIIFLAGISVLALCIFLVPEMADFTANLYPNIAPIKYLVFIVMYGAAVPF 62 Query: 64 YIALYQAFRLLGYIDRNKAFSELSVRVLKNIKYCAIVISGLYVAGLPLFYLMAEKDDAPG 123 Y+ALYQAF LL YID N AFSELSV+ LKNIK CAI ISG+YV LPLF+ +A+K D P Sbjct: 63 YVALYQAFNLLQYIDENTAFSELSVKALKNIKRCAITISGVYVLSLPLFHFIAKKMDPP- 121 Query: 124 IIVIGLVIIFASLVIAVFAAVXXXXXXXXXXXXXXNDLTV 163 I ++GL+I ASLVIAVFAA+ NDLTV Sbjct: 122 IGLVGLIIAVASLVIAVFAAILQRLLQEAIHIKSENDLTV 161 Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF Posted date: Mar 24, 2004 1:53 AM Number of letters in database: 757,237,578 Number of sequences in database: 2,715,099 Lambda K H 0.335 0.148 0.431 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 2715099 Number of Hits to DB: 190,764,353 Number of extensions: 6895742 Number of successful extensions: 28613 Number of sequences better than 1.0e-05: 10 Number of HSP's gapped: 28605 Number of HSP's successfully gapped: 10 Length of query: 163 Length of database: 757,237,578 Length adjustment: 116 Effective length of query: 47 Effective length of database: 442,286,094 Effective search space: 20787446418 Effective search space used: 20787446418 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 15 ( 7.2 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 39 (21.6 bits) S2: 121 (51.2 bits)