BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0346.0026.p
         (93 letters)

Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF 
           2,715,099 sequences; 757,237,578 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|NP_816260.1| conserved hypothetical protein [Enterococcus fa...    87   1e-16
ref|NP_691768.1| hypothetical protein OB0847 [Oceanobacillus ihe...    83   2e-15
ref|ZP_00182220.1| hypothetical protein Exigu248201 [Exiguobacte...    81   9e-15
ref|NP_463667.1| similar to E. coli YjdJ protein [Listeria monoc...    78   8e-14
ref|NP_104739.1| hypothetical protein msl3681 [Mesorhizobium lot...    77   1e-13

>ref|NP_816260.1| conserved hypothetical protein [Enterococcus faecalis V583]
 gb|AAO82330.1| conserved hypothetical protein [Enterococcus faecalis V583]
          Length = 91

 Score = 87.0 bits (214), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 43/87 (49%), Positives = 57/87 (65%), Gaps = 1/87 (1%)

Query: 8  KDNKRF-LIRDQDSIAAEMTYVTSTASLYIIDHTFVNTAYRGQGLGDLLVEAMVEYAREN 66
          ++N RF L  D++    EMT+  +  S+ IIDHTFV+  YRGQ L + LV A VE AR+ 
Sbjct: 5  EENNRFALYNDENQEIGEMTWSDAGESMMIIDHTFVDPTYRGQKLAEKLVLAGVEKARKE 64

Query: 67 GIKILPLCPFAKGRFQQRAEFGDVLHQ 93
            KI+PLCPFAK  F  + E+GDVL +
Sbjct: 65 HKKIIPLCPFAKKEFDTKPEYGDVLRK 91


>ref|NP_691768.1| hypothetical protein OB0847 [Oceanobacillus iheyensis HTE831]
 dbj|BAC12803.1| hypothetical conserved protein [Oceanobacillus iheyensis HTE831]
          Length = 95

 Score = 83.2 bits (204), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 38/84 (45%), Positives = 59/84 (70%)

Query: 9  DNKRFLIRDQDSIAAEMTYVTSTASLYIIDHTFVNTAYRGQGLGDLLVEAMVEYARENGI 68
          +NK ++  D  +  AE+T+V S  +  +IDHT+V T  RGQG+   L++ +V YARE G 
Sbjct: 8  ENKFYVGEDIRNPQAEITFVESGENRLVIDHTYVATDLRGQGIAQQLLDHVVTYAREKGK 67

Query: 69 KILPLCPFAKGRFQQRAEFGDVLH 92
           ++PLCPFAKG+ Q++A++ DVL+
Sbjct: 68 TVVPLCPFAKGQIQKQAKYNDVLN 91


>ref|ZP_00182220.1| hypothetical protein Exigu248201 [Exiguobacterium sp. 255-15]
          Length = 89

 Score = 80.9 bits (198), Expect = 9e-15,   Method: Compositional matrix adjust.
 Identities = 33/68 (48%), Positives = 49/68 (72%)

Query: 23 AEMTYVTSTASLYIIDHTFVNTAYRGQGLGDLLVEAMVEYARENGIKILPLCPFAKGRFQ 82
           E+TY  +    +IIDHT+V+  +R Q +G+ LV+A+VE+ARE  +K+LPLCPFAK  F+
Sbjct: 20 GEITYSDTKGGKWIIDHTYVDPNHRNQQIGEQLVKAIVEWAREEQVKLLPLCPFAKKEFE 79

Query: 83 QRAEFGDV 90
          Q  ++ DV
Sbjct: 80 QTPDYADV 87


>ref|NP_463667.1| similar to E. coli YjdJ protein [Listeria monocytogenes EGD-e]
 pir||AG1091 E. coli YjdJ protein homolog lmo0134 [imported] - Listeria
          monocytogenes (strain EGD-e)
 emb|CAC98349.1| lmo0134 [Listeria monocytogenes]
          Length = 92

 Score = 77.8 bits (190), Expect = 8e-14,   Method: Compositional matrix adjust.
 Identities = 34/82 (41%), Positives = 53/82 (64%)

Query: 9  DNKRFLIRDQDSIAAEMTYVTSTASLYIIDHTFVNTAYRGQGLGDLLVEAMVEYARENGI 68
          +N+ + + D+     E+T+V +   ++IIDHT V+ A RGQG+   LV+  VE A+  G 
Sbjct: 7  ENRIYAVNDEGVEVGEVTFVPTGEDMFIIDHTGVDDAARGQGIAQELVKRAVEKAKSEGK 66

Query: 69 KILPLCPFAKGRFQQRAEFGDV 90
          KI+PLCPFAK  F ++ E+ +V
Sbjct: 67 KIVPLCPFAKAEFSKKPEYQEV 88


>ref|NP_104739.1| hypothetical protein msl3681 [Mesorhizobium loti MAFF303099]
 dbj|BAB50525.1| hypothetical protein [Mesorhizobium loti]
          Length = 99

 Score = 77.4 bits (189), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 41/88 (46%), Positives = 54/88 (61%), Gaps = 1/88 (1%)

Query: 5  VHDKDNK-RFLIRDQDSIAAEMTYVTSTASLYIIDHTFVNTAYRGQGLGDLLVEAMVEYA 63
          + D+ +K R+++R      AEMT+        IIDHT V  A+RGQG G  LV   VE A
Sbjct: 10 LEDRGSKGRYVLRGPGGAEAEMTFTKIGEHQIIIDHTEVPDAFRGQGAGLRLVTRAVEDA 69

Query: 64 RENGIKILPLCPFAKGRFQQRAEFGDVL 91
          R  G KI+PLCPFA  +F++ AE+ DVL
Sbjct: 70 RAAGKKIIPLCPFANAQFRRHAEWADVL 97


  Database: All non-redundant GenBank CDS
  translations+PDB+SwissProt+PIR+PRF
    Posted date:  Mar 24, 2004  1:53 AM
  Number of letters in database: 757,237,578
  Number of sequences in database:  2,715,099
  
Lambda     K      H
   0.324    0.138    0.404 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 2715099
Number of Hits to DB: 126,634,785
Number of extensions: 4205646
Number of successful extensions: 14745
Number of sequences better than 1.0e-05: 26
Number of HSP's gapped: 14749
Number of HSP's successfully gapped: 26
Length of query: 93
Length of database: 757,237,578
Length adjustment: 61
Effective length of query: 32
Effective length of database: 591,616,539
Effective search space: 18931729248
Effective search space used: 18931729248
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.5 bits)
S2: 120 (50.8 bits)