BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0346.0020.p (134 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF 2,715,099 sequences; 757,237,578 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|NP_241522.1| BH0656~unknown conserved protein [Bacillus halo... 204 7e-52 ref|NP_832525.1| RRF2 family protein [Bacillus cereus ATCC 14579... 168 3e-41 ref|NP_845118.1| rrf2 family protein [Bacillus anthracis str. Am... 168 3e-41 ref|ZP_00098496.1| COG1959: Predicted transcriptional regulator ... 154 7e-37 ref|NP_691241.1| transcriptional regulator [Oceanobacillus iheye... 144 7e-34 >ref|NP_241522.1| BH0656~unknown conserved protein [Bacillus halodurans] pir||T44301 hypothetical protein BH0656 [imported] - Bacillus halodurans (strain C-125) dbj|BAA75320.1| similar to B.subtilis ywgB gene(27%-identity) [Bacillus halodurans] dbj|BAB04375.1| BH0656~unknown conserved protein [Bacillus halodurans] Length = 132 Score = 204 bits (518), Expect = 7e-52, Method: Compositional matrix adjust. Identities = 97/132 (73%), Positives = 112/132 (84%) Query: 3 MKYSKATNYALHTMLYLVAAAPNKPIGVQQLAERQGVSPTYLSKILTKLVKADLIESASG 62 MKYSKATNYALHT+L+L AA P+K +GVQQLAERQ VSPTYLSKILTKL KA +IES SG Sbjct: 1 MKYSKATNYALHTVLFLAAATPSKFVGVQQLAERQEVSPTYLSKILTKLAKAGMIESVSG 60 Query: 63 ANGGYRLKRRQEEISFLDIIHAIEGTASLFDCTLNHSSKCPIQQEMVEAERQMEQYLQNK 122 ANGGYRLKR EEISFLD+IHAIEGTASLFDC LNH S+C IQ+ MV AE +ME YL+ + Sbjct: 61 ANGGYRLKRDWEEISFLDVIHAIEGTASLFDCDLNHGSECLIQKVMVSAEEKMEDYLREQ 120 Query: 123 KMSELAEKITVD 134 K+++L +KI D Sbjct: 121 KIADLTKKIAGD 132 >ref|NP_832525.1| RRF2 family protein [Bacillus cereus ATCC 14579] gb|AAP09726.1| RRF2 family protein [Bacillus cereus ATCC 14579] Length = 133 Score = 168 bits (426), Expect = 3e-41, Method: Compositional matrix adjust. Identities = 82/132 (62%), Positives = 99/132 (75%) Query: 3 MKYSKATNYALHTMLYLVAAAPNKPIGVQQLAERQGVSPTYLSKILTKLVKADLIESASG 62 MKYSKATNYALHTML+L A PNK + V QLAE Q VSPTYLSKILTKL K +I S+SG Sbjct: 1 MKYSKATNYALHTMLFLAKATPNKLVSVHQLAEMQNVSPTYLSKILTKLTKEGMIHSSSG 60 Query: 63 ANGGYRLKRRQEEISFLDIIHAIEGTASLFDCTLNHSSKCPIQQEMVEAERQMEQYLQNK 122 GGY L + E+ISFLDIIHAIEG SLF+C L+ C I + M+ AE +ME+ L+N+ Sbjct: 61 PKGGYSLSKNWEDISFLDIIHAIEGKTSLFECCLHDKPGCLINEVMLAAEEKMEEELRNQ 120 Query: 123 KMSELAEKITVD 134 K+ +LA+KI VD Sbjct: 121 KIVDLAKKIKVD 132 >ref|NP_845118.1| rrf2 family protein [Bacillus anthracis str. Ames] gb|AAP26604.1| rrf2 family protein [Bacillus anthracis str. Ames] Length = 133 Score = 168 bits (426), Expect = 3e-41, Method: Compositional matrix adjust. Identities = 82/132 (62%), Positives = 98/132 (74%) Query: 3 MKYSKATNYALHTMLYLVAAAPNKPIGVQQLAERQGVSPTYLSKILTKLVKADLIESASG 62 MKYSKATNYALHTML+L A PNK + V QLAE Q VSPTYLSKILTKL K +I S+SG Sbjct: 1 MKYSKATNYALHTMLFLAKATPNKLVSVHQLAEMQNVSPTYLSKILTKLTKEGMIHSSSG 60 Query: 63 ANGGYRLKRRQEEISFLDIIHAIEGTASLFDCTLNHSSKCPIQQEMVEAERQMEQYLQNK 122 GGY L E+ISFLDIIHAIEG SLF+C L+ C I + M+ AE +ME+ L+N+ Sbjct: 61 PKGGYSLSHNWEDISFLDIIHAIEGKTSLFECCLHEKPGCLINEAMLAAEEKMEEELRNQ 120 Query: 123 KMSELAEKITVD 134 K+ +LA+KI VD Sbjct: 121 KIVDLAKKIKVD 132 >ref|ZP_00098496.1| COG1959: Predicted transcriptional regulator [Desulfitobacterium hafniense] Length = 126 Score = 154 bits (389), Expect = 7e-37, Method: Compositional matrix adjust. Identities = 74/125 (59%), Positives = 93/125 (74%) Query: 3 MKYSKATNYALHTMLYLVAAAPNKPIGVQQLAERQGVSPTYLSKILTKLVKADLIESASG 62 MKYS+AT+YALHT+L+L K +GVQ+LAE+Q VSPTYLSKIL KLVK +I S+ G Sbjct: 1 MKYSRATDYALHTILFLARNGSEKKLGVQELAEKQNVSPTYLSKILNKLVKEGMIHSSPG 60 Query: 63 ANGGYRLKRRQEEISFLDIIHAIEGTASLFDCTLNHSSKCPIQQEMVEAERQMEQYLQNK 122 NGGY L E+ISF DII AIEG SLFDC LN + +C I++ M+ AE+ ME+ L+ K Sbjct: 61 VNGGYSLGPHWEKISFFDIIQAIEGKTSLFDCCLNSNPECSIKKVMLAAEKNMEEELRTK 120 Query: 123 KMSEL 127 K+SEL Sbjct: 121 KISEL 125 >ref|NP_691241.1| transcriptional regulator [Oceanobacillus iheyensis HTE831] dbj|BAC12276.1| transcriptional regulator [Oceanobacillus iheyensis HTE831] Length = 141 Score = 144 bits (363), Expect = 7e-34, Method: Compositional matrix adjust. Identities = 71/133 (53%), Positives = 93/133 (69%), Gaps = 6/133 (4%) Query: 3 MKYSKATNYALHTMLYLVAAAPNKPIGVQQLAERQGVSPTYLSKILTKLVKADLIESASG 62 MK+SKATNYALHTM+YL IGV +LAE Q +SPTYLSKILTKLVK+ LIES G Sbjct: 1 MKFSKATNYALHTMVYLADIPKGTSIGVDRLAETQKLSPTYLSKILTKLVKSGLIESTPG 60 Query: 63 ANGGYRLKRRQEEISFLDIIHAIEGTASLFDCTLNHSS------KCPIQQEMVEAERQME 116 A GGYRL R+ + I+FLD+I AIEG LF C+++H +C I+ M+EAE +M+ Sbjct: 61 AKGGYRLARKADNITFLDVIRAIEGQTVLFYCSIDHDDDFSRNEECLIENAMIEAEEKMK 120 Query: 117 QYLQNKKMSELAE 129 + L K + ++A+ Sbjct: 121 ESLDRKYIVDIAK 133 Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF Posted date: Mar 24, 2004 1:53 AM Number of letters in database: 757,237,578 Number of sequences in database: 2,715,099 Lambda K H 0.316 0.129 0.352 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 2715099 Number of Hits to DB: 169,739,279 Number of extensions: 5875749 Number of successful extensions: 20604 Number of sequences better than 1.0e-05: 435 Number of HSP's gapped: 20579 Number of HSP's successfully gapped: 435 Length of query: 134 Length of database: 757,237,578 Length adjustment: 96 Effective length of query: 38 Effective length of database: 496,588,074 Effective search space: 18870346812 Effective search space used: 18870346812 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.6 bits) S2: 120 (50.8 bits)