BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0346.0015.p (710 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF 2,715,099 sequences; 757,237,578 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value dbj|BAB40444.2| alpha-D-mannosidase [Bacillus sp. GL1] 865 0.0 ref|NP_471457.1| similar to alpha-mannosidase [Listeria innocua]... 733 0.0 ref|NP_465539.1| similar to alpha-mannosidase [Listeria monocyto... 724 0.0 ref|NP_241657.1| alpha-mannosidase [Bacillus halodurans] >gi|253... 670 0.0 ref|ZP_00037617.1| COG0383: Alpha-mannosidase [Enterococcus faec... 565 e-159 >dbj|BAB40444.2| alpha-D-mannosidase [Bacillus sp. GL1] Length = 1047 Score = 865 bits (2234), Expect = 0.0, Method: Compositional matrix adjust. Identities = 431/701 (61%), Positives = 507/701 (72%), Gaps = 38/701 (5%) Query: 1 MFWTEEKLGARLRELEGYRYRDVVKLSDWLAVEDKDGANG-KYPPQLEGDTRLQLGDYWT 59 MFW EKL R+ EL YRYR + L +W ED+ GANG PP+L G+ R++ G+ W Sbjct: 1 MFWIVEKLQKRIEELAAYRYRHALPLDEWEMQEDEAGANGVSRPPELTGELRMRKGERWV 60 Query: 60 GRDAYLWLHSTIEVPAEWKGKRVVGLFDFGRTGGGNNSGFESLLYLDGKPYQGVDSNHQE 119 G D Y+WL + VP +WKG+ VVGLFDFG TG GNN+ FESLLYL+G+P+QGVD+NHQE Sbjct: 61 GYDRYVWLRRKVRVPEDWKGREVVGLFDFGLTGAGNNAAFESLLYLNGRPFQGVDTNHQE 120 Query: 120 VFLEEDAAGRALDFTFRLWSGLEGGGRPVPQEHRIMRSELAWLDEAADNLYYTGRAALST 179 VF+ + AG ++ FRLWSGLEGGG P QEH+ R+ELA LD AAD+LY+TGRAAL T Sbjct: 121 VFVPAELAGSEIELVFRLWSGLEGGGGPRDQEHQFKRAELAVLDAAADDLYFTGRAALET 180 Query: 180 CKQLADQQPEKQELLMALNRAFNKLDWSKPGSAGFYRSVRXXXXXXXXXXXXXXXKPPVT 239 K L + P K +LL A +RAF LDWS+PGS FY SV K PVT Sbjct: 181 AKILEESNPFKHDLLTAADRAFKLLDWSRPGSDEFYVSVGLAADALRTALSELDNKHPVT 240 Query: 240 VTAIGHTHIDVAWLWRLTHTREKAARSFSTVLRLMKQYPEYIFLQTQPQLYAYIKEDYPE 299 V A+GHTHIDVAWLW+L HTREK+ARSFSTVLRLM++YPEY+FLQTQPQLYAY+K+DYPE Sbjct: 241 VRALGHTHIDVAWLWQLKHTREKSARSFSTVLRLMEKYPEYLFLQTQPQLYAYLKKDYPE 300 Query: 300 IYAEIRKRVEEGRWEAGGAMWLEADCNLTSGESLVRQILYGTKFFREEFGVDCKYLWLPD 359 IY +IR+RV+EGRWEAGGAMWLEADCNLTSGESLVRQIL+GT+FFR+EFGV+C YLWLPD Sbjct: 301 IYEQIRERVKEGRWEAGGAMWLEADCNLTSGESLVRQILHGTRFFRDEFGVECDYLWLPD 360 Query: 360 VFGYSWALPQILRKSGIDTFMTTKISWSQYNRMPHDTFRWRGIDGSEVLTHFITTPEGPD 419 VFGYSWALPQILRKSGI TFMTTKISW+QYNRMPHDTF+WRGIDGSE+LTHFITTPE D Sbjct: 361 VFGYSWALPQILRKSGIKTFMTTKISWNQYNRMPHDTFKWRGIDGSEILTHFITTPEVAD 420 Query: 420 SGAWYYTYNGLIEAFSVQGIWDQYRDKNLNRELLLSXXXXXXXXXVNREMLEMRRRLDKM 479 W+YTYNG IE F+V+GIWD YRDK++NRELLLS VNR MLEMRRRLD+M Sbjct: 421 PNVWWYTYNGQIEPFTVKGIWDTYRDKDINRELLLSYGYGDGGGGVNRHMLEMRRRLDEM 480 Query: 480 PGIPAVRTGRADEYFERLNEAVRSTDQYVHTWDGELYLEFHRGTYTSQAYNKRMNRKLEL 539 PG+P V GRA ++F++L+E V TD+YVHTWDGELYLE+HRGTYTSQAYNKRMNRKLEL Sbjct: 481 PGLPKVVPGRAGDFFDKLHETVAGTDRYVHTWDGELYLEYHRGTYTSQAYNKRMNRKLEL 540 Query: 540 LYREAEWLQVLLAVE-KGSFSSYPAQLLLEGWHTILRNQFHDIIPGSSIREVYEDSRLEY 598 +YREAEWL L AV G +S YP + L EGW TILRNQFHDIIPGSSI VY+D+R EY Sbjct: 541 MYREAEWLHSLGAVAGGGDWSGYPKEALYEGWTTILRNQFHDIIPGSSIGAVYQDARAEY 600 Query: 599 AEAERIGSTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXFRQET 658 AEAER+G + Sbjct: 601 AEAERLGKEAIQAAAERLAGQA-----------------------------------EGA 625 Query: 659 EYTVFNGAFYERTELAAIPYEAA-GEDMVWTTAAGRQLSSQ 698 +V+NGA ++RTEL IP +A G W AGR L ++ Sbjct: 626 VVSVYNGAAFDRTELVEIPVQAGIGSQGGWLGEAGRPLRAE 666 >ref|NP_471457.1| similar to alpha-mannosidase [Listeria innocua] pir||AI1697 alpha-mannosidase homolog lin2123 [imported] - Listeria innocua (strain Clip11262) emb|CAC97353.1| lin2123 [Listeria innocua] Length = 1032 Score = 733 bits (1891), Expect = 0.0, Method: Compositional matrix adjust. Identities = 346/601 (57%), Positives = 432/601 (71%), Gaps = 5/601 (0%) Query: 1 MFWTEEKLGARLRELEGYRYRDVVKLSDWLAVEDKDGANGKYPPQLEGDTRLQLGDYWTG 60 MF+T++KL RL E+ YRY + + A ED DG P + D L +G+ W G Sbjct: 1 MFFTKDKLRGRLDEVALYRYEKTHPIQKFQAAEDMDGNIAARPQNVIYDNELTIGENWAG 60 Query: 61 RDAYLWLHSTIEVPAEWKGKRVVGLFDFGRTGGGNNSGFESLLYLDGKPYQGVDSNHQEV 120 RD Y+WL +TI P+ +G R++G FDFG TG G+NSGFESLL+++G+P+QGVD NHQEV Sbjct: 61 RDRYVWLKTTITFPSAKEGTRLIGYFDFGNTGDGHNSGFESLLFVNGEPFQGVDQNHQEV 120 Query: 121 FLEEDAAGRALDFTFRLWSGLEGGGRPVPQEHRIMRSELAWLDEAADNLYYTGRAALSTC 180 ++ AG+ + FRLWSGLEGGG P Q H++ + + +L+ D+LY+T +A L T Sbjct: 121 LFPDNFAGKTTELVFRLWSGLEGGGVPSIQTHQLKEAFIGYLNLVIDDLYFTSKATLKTL 180 Query: 181 KQLADQQPEKQELLMALNRAFNKLDWSKPGSAGFYRSVRXXXXXXXXXXXXXXXKPPVTV 240 QL + P LL A+NRA+ +DW PGS S+ P+ V Sbjct: 181 DQLEENNPTHAPLLQAINRAYLAIDWGTPGSNQNLSSMENANQILQAAIKEMPKNFPIKV 240 Query: 241 TAIGHTHIDVAWLWRLTHTREKAARSFSTVLRLMKQYPEYIFLQTQPQLYAYIKEDYPEI 300 A+GHTHIDVAWLWRL HTREKAARSFSTVL LM+ YPEY+FLQ+QPQLYAYIKEDYPEI Sbjct: 241 AAVGHTHIDVAWLWRLKHTREKAARSFSTVLHLMEDYPEYLFLQSQPQLYAYIKEDYPEI 300 Query: 301 YAEIRKRVEEGRWEAGGAMWLEADCNLTSGESLVRQILYGTKFFREEFGVDCKYLWLPDV 360 YA+I+ ++EEG WEA G MWLEADCN+ SGESLVRQ+LYG KF REEFG +LWLPDV Sbjct: 301 YAKIKAKIEEGNWEADGGMWLEADCNIPSGESLVRQMLYGQKFLREEFGKPSSFLWLPDV 360 Query: 361 FGYSWALPQILRKSGIDTFMTTKISWSQYNRMPHDTFRWRGIDGSEVLTHFITTPEGPDS 420 FGYSWALPQIL KSGI TFMTTKISW+QYNRMPHDTF+WRGIDG+E+LTHFIT PE Sbjct: 361 FGYSWALPQILCKSGIKTFMTTKISWNQYNRMPHDTFQWRGIDGTEILTHFITAPE---K 417 Query: 421 GAWYYTYNGLIEAFSVQGIWDQYRDKNLNRELLLSXXXXXXXXXVNREMLEMRRRLDKMP 480 + TYNG + A + G+WD+Y+DK +N+ELLL+ VNREMLEMRRR DKMP Sbjct: 418 NSRISTYNGKMTARELVGLWDKYQDKEINQELLLAYGYGDGGGGVNREMLEMRRRYDKMP 477 Query: 481 GIPAVRTGRADEYFERLNEAVRSTDQYVHTWDGELYLEFHRGTYTSQAYNKRMNRKLELL 540 GIP V+ A +YF L+E ++STDQYVHTW+GELY E+HRGTYTSQA+ K+MNRK+EL Sbjct: 478 GIPEVKPKSATDYFNNLHETIQSTDQYVHTWNGELYFEYHRGTYTSQAFTKKMNRKIELG 537 Query: 541 YREAEWLQVLLAVEKGSFSSYPAQLLLEGWHTILRNQFHDIIPGSSIREVYEDSRLEYAE 600 R +EWL VL +++G ++YP + L W +LRNQFHDIIPGSSI+EVY+D+ +EY E Sbjct: 538 LRNSEWLSVLANLKEG--TTYPTEKLANIWQILLRNQFHDIIPGSSIKEVYDDALIEYTE 595 Query: 601 A 601 A Sbjct: 596 A 596 >ref|NP_465539.1| similar to alpha-mannosidase [Listeria monocytogenes EGD-e] pir||AG1326 alpha-mannosidase homolog lmo2015 [imported] - Listeria monocytogenes (strain EGD-e) emb|CAD00093.1| lmo2015 [Listeria monocytogenes] Length = 1036 Score = 724 bits (1870), Expect = 0.0, Method: Compositional matrix adjust. Identities = 343/601 (57%), Positives = 429/601 (71%), Gaps = 5/601 (0%) Query: 1 MFWTEEKLGARLRELEGYRYRDVVKLSDWLAVEDKDGANGKYPPQLEGDTRLQLGDYWTG 60 MF+T++KL RL E+ YRY + ++ ED DG P + D L +G+ W+G Sbjct: 5 MFFTKDKLRGRLDEVALYRYEKTYPIRNFQTAEDMDGEIAARPDNILYDNELTIGENWSG 64 Query: 61 RDAYLWLHSTIEVPAEWKGKRVVGLFDFGRTGGGNNSGFESLLYLDGKPYQGVDSNHQEV 120 RD Y+WL +TI P G R++G FDFG TG G+NSGFESLL+++G+PYQGVD NH+EV Sbjct: 65 RDRYVWLKTTITFPDTKTGTRLIGYFDFGNTGDGHNSGFESLLFVNGEPYQGVDQNHREV 124 Query: 121 FLEEDAAGRALDFTFRLWSGLEGGGRPVPQEHRIMRSELAWLDEAADNLYYTGRAALSTC 180 + AG+ ++ FRLWSGLEGGG P Q H++ + + +L+ D+LY+T +A L T Sbjct: 125 LFPDSFAGKTIELVFRLWSGLEGGGTPTIQTHQLKEAFIGYLNLMIDDLYFTSKATLKTL 184 Query: 181 KQLADQQPEKQELLMALNRAFNKLDWSKPGSAGFYRSVRXXXXXXXXXXXXXXXKPPVTV 240 QL ++ P LL A+NRA+ +DWS PGS S+ P+ V Sbjct: 185 DQLEEKNPTYAPLLQAINRAYLAIDWSTPGSIQNLISMETANQNLQAALKKIPKNFPIKV 244 Query: 241 TAIGHTHIDVAWLWRLTHTREKAARSFSTVLRLMKQYPEYIFLQTQPQLYAYIKEDYPEI 300 A+GHTHIDVAWLWRL HTREKAARSFSTVL LM+ YPEY+FLQ+QPQLYAYIKEDYPEI Sbjct: 245 AAVGHTHIDVAWLWRLKHTREKAARSFSTVLHLMEDYPEYLFLQSQPQLYAYIKEDYPEI 304 Query: 301 YAEIRKRVEEGRWEAGGAMWLEADCNLTSGESLVRQILYGTKFFREEFGVDCKYLWLPDV 360 YA+I+ ++ EG WEA G MWLEADCN+ SGESLVRQ+LYG KF REEFG +LWLPDV Sbjct: 305 YAKIKAKISEGNWEADGGMWLEADCNIPSGESLVRQMLYGQKFLREEFGKPSSFLWLPDV 364 Query: 361 FGYSWALPQILRKSGIDTFMTTKISWSQYNRMPHDTFRWRGIDGSEVLTHFITTPEGPDS 420 FGYSWALPQILRKSGI TFMTTKISW+QYNRMPHDTF+WRG+DG+E+LTHFIT PE Sbjct: 365 FGYSWALPQILRKSGIKTFMTTKISWNQYNRMPHDTFQWRGMDGTEILTHFITAPE---K 421 Query: 421 GAWYYTYNGLIEAFSVQGIWDQYRDKNLNRELLLSXXXXXXXXXVNREMLEMRRRLDKMP 480 + TYNG + A + G+WD+Y+DK +N+ELLL+ VNREMLEMRRR D MP Sbjct: 422 NSRISTYNGKMTARELVGLWDKYQDKEVNQELLLAYGYGDGGGGVNREMLEMRRRYDAMP 481 Query: 481 GIPAVRTGRADEYFERLNEAVRSTDQYVHTWDGELYLEFHRGTYTSQAYNKRMNRKLELL 540 GIP V+ A YF L+E + +TDQYVHTW+GELY E+HRGTYTSQA+ K+MNRK+EL Sbjct: 482 GIPEVKPKSATTYFNDLHETINATDQYVHTWNGELYFEYHRGTYTSQAFTKKMNRKIELG 541 Query: 541 YREAEWLQVLLAVEKGSFSSYPAQLLLEGWHTILRNQFHDIIPGSSIREVYEDSRLEYAE 600 R +EWL VL +++G +YP + L W +LRNQFHDIIPGSSI+EVY+D+ +EY E Sbjct: 542 LRNSEWLSVLANLKQG--ITYPTEKLAGIWQILLRNQFHDIIPGSSIKEVYDDALIEYTE 599 Query: 601 A 601 A Sbjct: 600 A 600 >ref|NP_241657.1| alpha-mannosidase [Bacillus halodurans] pir||G83748 alpha-mannosidase BH0791 [imported] - Bacillus halodurans (strain C-125) dbj|BAB04510.1| alpha-mannosidase [Bacillus halodurans] Length = 1039 Score = 670 bits (1729), Expect = 0.0, Method: Compositional matrix adjust. Identities = 319/605 (52%), Positives = 425/605 (70%), Gaps = 4/605 (0%) Query: 1 MFWTEEKLGARLRELEGYRYRDVVKLSDWLAVEDKDGANGKYPPQLEGDTRLQLGDYWTG 60 MF+ EKL R+ EL YRYRDV L + E + G P T + D W+G Sbjct: 1 MFYQLEKLQNRINELASYRYRDVKPLDSFYMYEPEQGKESVVPTHYPKQT-FHVNDTWSG 59 Query: 61 RDAYLWLHSTIEVPAEWKGKRVVGLFDFGRTGGGNNSGFESLLYLDGKPYQGVDSNHQEV 120 R+ Y+WL++++ +P W KR V D GRTGGGNNSGFE+LL+++ +P+QGVDSNHQEV Sbjct: 60 RNKYVWLNTSLHLPEAWSDKRCVLFLDVGRTGGGNNSGFEALLFVNKQPFQGVDSNHQEV 119 Query: 121 FLEEDAAGRALDFTFRLWSGLEGGGRPVPQEHRIMRSELAWLDEAADNLYYTGRAALSTC 180 L ++ R L+ +WSGLEGGG P Q +R ++ WLD+ D Y+ +A L Sbjct: 120 LLPKEGGNR-LEIDVMMWSGLEGGGTPRTQYYRFKQAWYGWLDQKVDAFYFQAKAILEAI 178 Query: 181 KQLADQQPEKQELLMALNRAFNKLDWSKPGSAGFYRSVRXXXXXXXXXXXXXXXKPPVTV 240 QL + +L LN+AF ++W++PG+ FY SV V + Sbjct: 179 GQLDVHDATRVAMLSRLNQAFASINWTQPGNEQFYDSVYEALERLERDMEHLPKHSDVHI 238 Query: 241 TAIGHTHIDVAWLWRLTHTREKAARSFSTVLRLMKQYPEYIFLQTQPQLYAYIKEDYPEI 300 AIGH+HID+AWLW+ HT+EKA R+FSTVLRLM YP+Y++LQ+QPQLY ++KE+ P++ Sbjct: 239 HAIGHSHIDLAWLWQTKHTKEKAKRTFSTVLRLMDLYPDYVYLQSQPQLYQWMKEEEPKL 298 Query: 301 YAEIRKRVEEGRWEAGGAMWLEADCNLTSGESLVRQILYGTKFFREEFGVDCKYLWLPDV 360 Y I+++V++G+WE G MW+EADCN+ SGESLVRQ+LYG +FF++EF + K LWLPDV Sbjct: 299 YEAIKQKVDDGQWEVEGGMWVEADCNIPSGESLVRQLLYGKRFFKKEFHKESKILWLPDV 358 Query: 361 FGYSWALPQILRKSGIDTFMTTKISWSQYNRMPHDTFRWRGIDGSEVLTHFITTPE-GPD 419 FGYSWALPQIL+KSGIDTFMTTKISW+QYNRMP+DTF WRG+DG+E+LTHFITTPE G Sbjct: 359 FGYSWALPQILKKSGIDTFMTTKISWNQYNRMPNDTFYWRGLDGTEILTHFITTPEPGRP 418 Query: 420 SGAWYYTYNGLIEAFSVQGIWDQYRDKNLNRELLLSXXXXXXXXXVNREMLEMRRRLDKM 479 +W+YTYNGL+ A +++G W++YRDK +N++LLL+ VNREMLEM+R+LD++ Sbjct: 419 KDSWFYTYNGLMSAETIKGTWEKYRDKAVNQDLLLAYGYGDGGGGVNREMLEMKRQLDQV 478 Query: 480 PGIPAVRTGRADEYFERLNEAVRSTDQYVHTWDGELYLEFHRGTYTSQAYNKRMNRKLEL 539 PG+P V++ EYF +L+E V +T +YVHTWDGELYLE+HRGTYTSQA K+ NR+LE Sbjct: 479 PGVPHVKSTHVKEYFHQLHENVANTAEYVHTWDGELYLEYHRGTYTSQAKMKKKNRQLEF 538 Query: 540 LYREAEWLQVLLAVEKGSFSSYPAQLLLEGWHTILRNQFHDIIPGSSIREVYEDSRLEYA 599 YR+AE L V + EKG + +YP L +GW +L NQFHDIIPGSSI+EVYED+ +Y Sbjct: 539 SYRDAEILAVTASAEKG-WDAYPGSSLEKGWKLLLLNQFHDIIPGSSIKEVYEDAAKDYT 597 Query: 600 EAERI 604 EA I Sbjct: 598 EAAAI 602 >ref|ZP_00037617.1| COG0383: Alpha-mannosidase [Enterococcus faecium] Length = 490 Score = 565 bits (1457), Expect = e-159, Method: Compositional matrix adjust. Identities = 277/484 (57%), Positives = 342/484 (70%), Gaps = 9/484 (1%) Query: 1 MFWTEEKLGARLRELEGYRYRDVVKLSDWLAVEDKDGANGKYPPQ-LEGDTRLQLGDYWT 59 +F+ +EKL AR+ EL YR+ +V+LSDWL VED + KYPP+ +GD W Sbjct: 3 LFYLKEKLEARIEELGKYRFSKIVELSDWLVVED-ETKEAKYPPKDFSSAATFSVGDTWK 61 Query: 60 GRDAYLWLHSTIEVPAEWKGKRVVGLFDFGRTGGGNNSGFESLLYLDGKPYQGVDSNHQE 119 GRD YLW+ IE+P + +FG TGGG NSGFESL++++GKPYQGVDSNH+E Sbjct: 62 GRDFYLWVKKEIEMP---DVDDLYLYLNFGHTGGGYNSGFESLMFINGKPYQGVDSNHKE 118 Query: 120 VFLEEDAAGRALDFTFRLWSGLEGGGRPVPQEHRIMRSELAWLDEAADNLYYTGRAALST 179 V + ++ G+ ++ +LWSGLEGGG Q H+ ++EL+ + D L+Y A T Sbjct: 119 VKIADEFRGKKVEVALKLWSGLEGGGPEQIQVHQFKQAELSQMMVPVDELFYYADAINKT 178 Query: 180 CKQLADQQPEKQELLMALNRAFNKLDWSKPGSAGFYRSVRXXXXXXXXXXXXXXXKPPVT 239 K+L P + +L LN A N+++W +PGS FY SV +T Sbjct: 179 VKELGQDNPIQYKLSHVLNHAINQINWIEPGSQTFYTSVAKAVSELSEGIAAIPKDEMIT 238 Query: 240 VTAIGHTHIDVAWLWRLTHTREKAARSFSTVLRLMKQYPEYIFLQTQPQLYAYIKEDYPE 299 VTA+GHTHIDVAWLWRL HTREKAARSFSTVLRLM++YPEYIFLQTQPQLY YIKEDYPE Sbjct: 239 VTAVGHTHIDVAWLWRLKHTREKAARSFSTVLRLMEEYPEYIFLQTQPQLYKYIKEDYPE 298 Query: 300 IYAEIRKRVEEGRWEAGGAMWLEADCNLTSGESLVRQILYGTKFFREEFGVDCKYLWLPD 359 IYA+I++RV EGRWEA G+MWLEADCN+ SGESL RQIL+G KF +EEF D YLWLPD Sbjct: 299 IYAKIKERVAEGRWEADGSMWLEADCNIPSGESLTRQILHGAKFIKEEFNQDIHYLWLPD 358 Query: 360 VFGYSWALPQILRKSGIDTFMTTKISWSQYNRMPHDTFRWRGIDGSEVLTHFITTPEGPD 419 VFGYSWALPQIL KSGIDTFMTTKISW+Q+NRMPHDTF+W+G+DGSEVLTHFITTPE Sbjct: 359 VFGYSWALPQILTKSGIDTFMTTKISWNQFNRMPHDTFKWKGMDGSEVLTHFITTPEPGK 418 Query: 420 SGA----WYYTYNGLIEAFSVQGIWDQYRDKNLNRELLLSXXXXXXXXXVNREMLEMRRR 475 + WYYTYNG +E +V G+++ YRDKN+N ELL+S VNR+MLE RR+ Sbjct: 419 ENSWESNWYYTYNGELEPETVLGVYNAYRDKNINDELLISYGFGDGGGGVNRDMLEKRRK 478 Query: 476 LDKM 479 LDK Sbjct: 479 LDKF 482 Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF Posted date: Mar 24, 2004 1:53 AM Number of letters in database: 757,237,578 Number of sequences in database: 2,715,099 Lambda K H 0.319 0.136 0.427 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 2715099 Number of Hits to DB: 1,019,378,776 Number of extensions: 42060386 Number of successful extensions: 84272 Number of sequences better than 1.0e-05: 87 Number of HSP's gapped: 84162 Number of HSP's successfully gapped: 91 Length of query: 710 Length of database: 757,237,578 Length adjustment: 133 Effective length of query: 577 Effective length of database: 396,129,411 Effective search space: 228566670147 Effective search space used: 228566670147 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 130 (54.7 bits)