BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0345.0038.p (170 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF 2,715,099 sequences; 757,237,578 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|ZP_00112480.1| hypothetical protein [Nostoc punctiforme] 180 9e-45 ref|NP_390928.1| ytpB [Bacillus subtilis] >gi|33301838|sp|O34707... 169 2e-41 ref|NP_658788.1| hypothetical protein predicted by GeneMark [Bac... 157 8e-38 ref|NP_834456.1| hypothetical protein [Bacillus cereus ATCC 1457... 157 8e-38 ref|NP_981196.1| conserved hypothetical protein [Bacillus cereus... 149 3e-35 >ref|ZP_00112480.1| hypothetical protein [Nostoc punctiforme] Length = 381 Score = 180 bits (457), Expect = 9e-45, Method: Compositional matrix adjust. Identities = 90/150 (60%), Positives = 107/150 (71%), Gaps = 4/150 (2%) Query: 17 PRGPIGLMSRVYKYVLPEVRECLHFWRQDAEGIPDPELRKQALASIETKEFHCQGGGIYA 76 P LM R+Y VLP VR+ L FW+++AE IP+PELRKQAL SI TK FHC+GG IY Sbjct: 28 PSNSGMLMLRIYCDVLPRVRKHLEFWKKNAEQIPNPELRKQALLSIRTKTFHCEGGSIY- 86 Query: 77 AGNLSMRHI--LIPLIVAYQTISDYLDNLCDRSTSLDPADFRLLHQSMLDAINPKAEPVN 134 G L+ I +I IVAYQTISDYLDNLCDRS SLDP DFR LHQ+ LDA+ P A+ +N Sbjct: 87 -GLLAKEEIEPIICFIVAYQTISDYLDNLCDRSNSLDPKDFRTLHQACLDALTPSAKCIN 145 Query: 135 YYALRSEQNDGGYLHRLVRKCQEMTALLPG 164 YY R EQ+DGGYL +LV+ CQ + LP Sbjct: 146 YYQFRQEQDDGGYLMKLVKTCQNVLRQLPS 175 >ref|NP_390928.1| ytpB [Bacillus subtilis] sp|O34707|YTPB_BACSU Hypothetical protein ytpB pir||E69998 hypothetical protein ytpB - Bacillus subtilis gb|AAC00246.1| YtpB [Bacillus subtilis] emb|CAB15028.1| ytpB [Bacillus subtilis subsp. subtilis str. 168] Length = 367 Score = 169 bits (428), Expect = 2e-41, Method: Compositional matrix adjust. Identities = 79/142 (55%), Positives = 98/142 (69%) Query: 17 PRGPIGLMSRVYKYVLPEVRECLHFWRQDAEGIPDPELRKQALASIETKEFHCQGGGIYA 76 P P GLM++VY+ + P V + L W+Q +E I + EL+ QA ASI K FHC+GGGI A Sbjct: 4 PEHPFGLMAKVYRDIFPLVHQELDIWKQKSESIHNSELKAQATASIRDKTFHCEGGGILA 63 Query: 77 AGNLSMRHILIPLIVAYQTISDYLDNLCDRSTSLDPADFRLLHQSMLDAINPKAEPVNYY 136 + S + + I+AYQTISDYLDNLCDRSTSLDP DFR+LH SM DA+ AE NYY Sbjct: 64 LLSGSQKQKCVEFIIAYQTISDYLDNLCDRSTSLDPQDFRMLHASMQDALTVGAELQNYY 123 Query: 137 ALRSEQNDGGYLHRLVRKCQEM 158 R EQ+D GYLH LV+ CQ + Sbjct: 124 QFREEQDDSGYLHELVKTCQRV 145 >ref|NP_658788.1| hypothetical protein predicted by GeneMark [Bacillus anthracis A2012] ref|NP_847202.1| conserved hypothetical protein [Bacillus anthracis str. Ames] gb|AAP28688.1| conserved hypothetical protein [Bacillus anthracis str. Ames] Length = 354 Score = 157 bits (398), Expect = 8e-38, Method: Compositional matrix adjust. Identities = 81/143 (56%), Positives = 97/143 (67%), Gaps = 1/143 (0%) Query: 17 PRGPIGLMSRVYKYVLPEVRECLHFWRQDAEGIPDPELRKQALASIETKEFHCQGGGIYA 76 P PI LM++VY+ V P V L W++ A IP+ EL QA+ASIE K FHC+GGGI A Sbjct: 4 PSNPITLMAKVYRDVFPVVHHELAMWKERAYHIPNDELHSQAIASIEHKTFHCEGGGILA 63 Query: 77 AGNLSMRHILIPLIVAYQTISDYLDNLCDRSTSLDPADFRLLHQSMLDAINPKAE-PVNY 135 R I IVAYQTISDYLDNLCDRSTSLDP DF LH+SML A++P+ E NY Sbjct: 64 LLANEHREECIRFIVAYQTISDYLDNLCDRSTSLDPNDFAALHESMLMALSPEVEGGGNY 123 Query: 136 YALRSEQNDGGYLHRLVRKCQEM 158 Y R +Q+DGGYL LV CQ++ Sbjct: 124 YRYRDDQDDGGYLDELVETCQDV 146 >ref|NP_834456.1| hypothetical protein [Bacillus cereus ATCC 14579] gb|AAP11657.1| hypothetical protein [Bacillus cereus ATCC 14579] Length = 354 Score = 157 bits (397), Expect = 8e-38, Method: Compositional matrix adjust. Identities = 81/143 (56%), Positives = 97/143 (67%), Gaps = 1/143 (0%) Query: 17 PRGPIGLMSRVYKYVLPEVRECLHFWRQDAEGIPDPELRKQALASIETKEFHCQGGGIYA 76 P PI LM++VY+ V P V L W++ A IP+ EL QA+ASIE K FHC+GGGI A Sbjct: 4 PSNPITLMAKVYRDVFPVVHHELAMWKERAYHIPNDELHSQAIASIEHKTFHCEGGGILA 63 Query: 77 AGNLSMRHILIPLIVAYQTISDYLDNLCDRSTSLDPADFRLLHQSMLDAINPKAE-PVNY 135 R I IVAYQTISDYLDNLCDRSTSLDP DF LH+SML A++P+ E NY Sbjct: 64 LLANEHREECIRFIVAYQTISDYLDNLCDRSTSLDPNDFAALHESMLMALSPEVEGGGNY 123 Query: 136 YALRSEQNDGGYLHRLVRKCQEM 158 Y R +Q+DGGYL LV CQ++ Sbjct: 124 YRYRDDQDDGGYLDELVETCQDV 146 >ref|NP_981196.1| conserved hypothetical protein [Bacillus cereus ATCC 10987] gb|AAS43804.1| conserved hypothetical protein [Bacillus cereus ATCC 10987] Length = 344 Score = 149 bits (375), Expect = 3e-35, Method: Compositional matrix adjust. Identities = 77/136 (56%), Positives = 93/136 (68%), Gaps = 1/136 (0%) Query: 24 MSRVYKYVLPEVRECLHFWRQDAEGIPDPELRKQALASIETKEFHCQGGGIYAAGNLSMR 83 M++VY+ V P V L W++ A IP+ EL QA+ASIE K FHC+GGGI A R Sbjct: 1 MAKVYRDVFPVVHHELAMWKERAYHIPNDELHSQAIASIEHKTFHCEGGGILALLANEHR 60 Query: 84 HILIPLIVAYQTISDYLDNLCDRSTSLDPADFRLLHQSMLDAINPKAE-PVNYYALRSEQ 142 I IVAYQTISDYLDNLCDRSTSLDP DF LH+SML A++P+ E NYY R +Q Sbjct: 61 EECIRFIVAYQTISDYLDNLCDRSTSLDPNDFAALHESMLMALSPEVEGGGNYYRYRDDQ 120 Query: 143 NDGGYLHRLVRKCQEM 158 +DGGYL LV CQ++ Sbjct: 121 DDGGYLDELVETCQDV 136 Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF Posted date: Mar 24, 2004 1:53 AM Number of letters in database: 757,237,578 Number of sequences in database: 2,715,099 Lambda K H 0.321 0.139 0.422 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 2715099 Number of Hits to DB: 253,048,031 Number of extensions: 9789712 Number of successful extensions: 17106 Number of sequences better than 1.0e-05: 7 Number of HSP's gapped: 17103 Number of HSP's successfully gapped: 7 Length of query: 170 Length of database: 757,237,578 Length adjustment: 117 Effective length of query: 53 Effective length of database: 439,570,995 Effective search space: 23297262735 Effective search space used: 23297262735 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 121 (51.2 bits)