BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0345.0032.p (440 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF 2,715,099 sequences; 757,237,578 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|NP_692130.1| hypothetical protein OB1209 [Oceanobacillus ihe... 337 3e-91 ref|ZP_00060833.1| COG1306: Uncharacterized conserved protein [C... 264 4e-69 ref|ZP_00060832.1| COG1306: Uncharacterized conserved protein [C... 243 5e-63 ref|NP_603353.1| Hypothetical cytosolic protein [Fusobacterium n... 232 1e-59 ref|ZP_00144384.1| hypothetical protein [Fusobacterium nucleatum... 227 5e-58 >ref|NP_692130.1| hypothetical protein OB1209 [Oceanobacillus iheyensis HTE831] dbj|BAC13165.1| hypothetical conserved protein [Oceanobacillus iheyensis HTE831] Length = 406 Score = 337 bits (864), Expect = 3e-91, Method: Compositional matrix adjust. Identities = 178/348 (51%), Positives = 233/348 (66%), Gaps = 33/348 (9%) Query: 109 PDAPKIKGIYVTAYSAGGSRMXXXXXXXXKTELNSMVIDIKDDAGYITYKTDNPELQKLG 168 PDA ++GIYVT SAGG R T LN+MVID+K+D G +T+ + + G Sbjct: 68 PDA--VRGIYVTGNSAGGERFNSLIDFVNSTALNTMVIDVKEDHGNLTF------IPEEG 119 Query: 169 HPQP-----FIGDINQLMARLKKHDVYPIARIVVFKDSVLAKKKPELSFVNANGSVWTNK 223 P I D Q+M RL+K +YPIAR+VVFKDSVLA K+P+LSF NG VW N Sbjct: 120 SPYEDMATNVISDPEQMMKRLEKEQIYPIARVVVFKDSVLAHKRPDLSFTK-NGEVWENG 178 Query: 224 GGDSFVNPYNQDVWKYNVDIAKEAVKLGFKEIQFDYVRFPEGFEKRAETLKYTKSD---- 279 G++FVNP+ Q+VW YN+++AK A ++GFKEIQFDYVRFPEGFE + E LKYT D Sbjct: 179 KGEAFVNPFEQEVWDYNIEVAKMAAEMGFKEIQFDYVRFPEGFETKDEELKYTLGDYKDL 238 Query: 280 -----RPRVEIISDFVKYAKSELGPLGVRVSVDIFGYAASVPAAEGIGQDFVKISKNVDV 334 + RVE +SDFV YAK EL V VSVDIFGYAA++ A GIGQ+F +IS+NVD+ Sbjct: 239 DMNNIKKRVEAVSDFVAYAKEELSDYDVDVSVDIFGYAATIEEAPGIGQNFSRISENVDI 298 Query: 335 ISPMVYPSHYSTGWFDVKDPDKNPYATIKGSMVDTHKKLDP--LGSYK--PIIRPWIQDF 390 IS M+YPSH+S+ +F ++ PD PY +++D + K++ LG+ + P+ RPW+QDF Sbjct: 299 ISSMIYPSHWSS-YFGIEKPDTEPY-----NLIDEYSKVENQVLGALEEPPVSRPWLQDF 352 Query: 391 TASWLGSGHYVKYGKQQVEDQIRALKEKNVDEFLLWNANNRYTAGVDY 438 A WL SG +YGK +VE QI+AL E ++EFLLWN+ N YT VDY Sbjct: 353 EAPWLYSGSTFQYGKSEVEAQIQALYENGINEFLLWNSGNTYTKDVDY 400 >ref|ZP_00060833.1| COG1306: Uncharacterized conserved protein [Clostridium thermocellum ATCC 27405] Length = 419 Score = 264 bits (674), Expect = 4e-69, Method: Compositional matrix adjust. Identities = 147/385 (38%), Positives = 227/385 (58%), Gaps = 18/385 (4%) Query: 55 NPTITAQHTANPGASQNTGGGNAATPSSGASPGTEASPGTAAGAADTAILTDPQPDAPKI 114 NP TAQ T N A+ GGN + S +E SP D P K+ Sbjct: 40 NPAPTAQATDNVEAN---NGGNTDGEAPETSEPSEESPVPNNSGEDAK----PVKKDIKV 92 Query: 115 KGIYVTAYSAGG-SRMXXXXXXXXKTELNSMVIDIKDDAGYITYKTDNPELQKLGHPQPF 173 K +Y+T ++ G R+ +TE+N+ V+DIKDD GY+ Y+++ P ++++G + Sbjct: 93 KALYLTGWTVGSDERLQHYVDLANRTEINAYVVDIKDDDGYVGYESNIPAVREIGAWKSK 152 Query: 174 IGDINQLMARLKKHDVYPIARIVVFKDSVLAKKKPELSFVNANGSVWTNKGGDSFVNPYN 233 ++++++ ++++ I R+V FKD VL+ KKPEL+ + NG W + ++++PYN Sbjct: 153 Y-NVDKVLKTFHDNNIHVIGRLVCFKDPVLSSKKPELAVKSVNGGSWRDNHNLTWLDPYN 211 Query: 234 QDVWKYNVDIAKEAVKLGFKEIQFDYVRFPEGFEKRAETLKYTKSDRPRVEIISDFVKYA 293 +D W Y ++IAKEAV+ GF EIQFDY+RFP K+ ++ + + + EII++F+ YA Sbjct: 212 KDSWPYLIEIAKEAVEKGFDEIQFDYIRFPNDGSKK--SMSFNTGGKEKHEIINEFLAYA 269 Query: 294 KSELGPLGVRVSVDIFGYAASVPA-AEGIGQDFVKISKNVDVISPMVYPSHYSTGWF--- 349 + +L GV +S D+FG PA E IGQ KI K+VD ISPMVYPSHY+ G Sbjct: 270 REQLP--GVVLSADVFGIILESPADTEDIGQYLEKIVKDVDYISPMVYPSHYAVGQIVNG 327 Query: 350 -DVKDPDKNPYATIKGSMVDTHKKLDPLGSYKPIIRPWIQDFTASWLGSGHYVKYGKQQV 408 PD +PY + S+V + +L + YK +RP+IQDFTASWLG G+Y YG +Q+ Sbjct: 328 VQFMKPDLDPYGVVYQSLVKCNNRLAQVEGYKADVRPYIQDFTASWLGKGYYQSYGPEQL 387 Query: 409 EDQIRALKEKNVDEFLLWNANNRYT 433 QI+A+ + +E++ W+ANN Y+ Sbjct: 388 RQQIQAVYDAGYEEWICWDANNTYS 412 >ref|ZP_00060832.1| COG1306: Uncharacterized conserved protein [Clostridium thermocellum ATCC 27405] Length = 419 Score = 243 bits (621), Expect = 5e-63, Method: Compositional matrix adjust. Identities = 130/348 (37%), Positives = 204/348 (58%), Gaps = 23/348 (6%) Query: 104 LTDPQPDAP--KIKGIYVTAYSAGGSR-MXXXXXXXXKTELNSMVIDIKDDAGYITYKTD 160 L+ P+P+ K+KG+Y+T SAG + M TELN++V+D+K+D G + Y ++ Sbjct: 70 LSSPRPERKPVKVKGLYITGTSAGNKKFMERLVNLINTTELNTVVLDVKED-GKVNYASE 128 Query: 161 NPELQKLGHPQPFIGDINQLMARLKKHDVYPIARIVVFKDSVLAKKKPELSFVNANGSVW 220 ++K+G ++++++ L +++Y I RIV F+D+ LA K+ +L+ +GS+W Sbjct: 129 VESVKKIGAYHELY-NVDEVIKLLHDNNIYVIGRIVCFRDNYLAGKRVDLAIKRKDGSIW 187 Query: 221 TNKGGDSFVNPYNQDVWKYNVDIAKEAVKLGFKEIQFDYVRFPEGFEKRAETLKYTKSDR 280 G ++ NPYN++VW+YN+DIAKEAVK GF EIQFDYVRFP + + Y ++ Sbjct: 188 RENGSIAWTNPYNKEVWRYNIDIAKEAVKKGFDEIQFDYVRFPAAGKNEVD---YGENPI 244 Query: 281 PRVEIISDFVKYAKSELGPLGVRVSVDIFGYAASVPA-AEGIGQDFVKISKNVDVISPMV 339 P+ + IS F+K A SE+ +GV VS DIF P EGIGQ +I ++D ISPM+ Sbjct: 245 PKADAISGFLKEAASEINKMGVPVSADIFAIVCETPGDTEGIGQVLERIGMDIDYISPMI 304 Query: 340 YPSHY--------------STGWFDVKDPDKNPYATIKGSMVDTHKKLDPLGSYKPIIRP 385 YPSH+ S PD PY + ++ T ++ + Y+ +RP Sbjct: 305 YPSHFANASRGMMGNGKGQSINGILFTAPDLKPYEVVYNVLLKTKDRISKVEGYRAKVRP 364 Query: 386 WIQDFTASWLGSGHYVKYGKQQVEDQIRALKEKNVDEFLLWNANNRYT 433 ++Q FTAS+L G+Y YG +Q+ QI+A+ + +E++ WNA N YT Sbjct: 365 YLQGFTASYLPKGYYQHYGPEQIRQQIKAVYDAGYEEWIFWNAANTYT 412 >ref|NP_603353.1| Hypothetical cytosolic protein [Fusobacterium nucleatum subsp. nucleatum ATCC 25586] gb|AAL94652.1| Hypothetical cytosolic protein [Fusobacterium nucleatum subsp. nucleatum ATCC 25586] Length = 380 Score = 232 bits (592), Expect = 1e-59, Method: Compositional matrix adjust. Identities = 133/326 (40%), Positives = 197/326 (60%), Gaps = 9/326 (2%) Query: 113 KIKGIYVTAYS-AGGSRMXXXXXXXXKTELNSMVIDIKDDAGYITYKTDNP--ELQKLGH 169 K++G+YV+A+S A R+ K +N+ +ID+K D G +T+ + + K + Sbjct: 54 KVRGLYVSAHSVALKGRLDELIELAKKNNINAFIIDVKGDYGELTFPMSDEINKYTKSAN 113 Query: 170 PQPFIGDINQLMARLKKHDVYPIARIVVFKDSVLAKKKPELSFVNANG-SVWTNKGGDSF 228 P I DI ++ +LK + +Y IARIV FKD++ AK+ P+ V +G +TN G + Sbjct: 114 KNPIIKDIEPVIKKLKDNGIYAIARIVSFKDTIYAKENPDKIIVYKDGGKAFTNSDGLVW 173 Query: 229 VNPYNQDVWKYNVDIAKEAVKLGFKEIQFDYVRFP-EGFEKRAETLKYTKSDR-PRVEII 286 V+ Y++++W+YNV +AKEA K GF EIQFDYVRFP K + L Y +D + E I Sbjct: 174 VSAYDKNLWEYNVTVAKEAAKAGFNEIQFDYVRFPASNGGKLDKALNYRNTDNLTKSEAI 233 Query: 287 SDFVKYAKSELGPLGVRVSVDIFGYAASVPAAEGIGQDFVKISKNVDVISPMVYPSHYST 346 ++ YAK EL P V VS DI+G S +GQ + +S VD +SPM+YPSHY Sbjct: 234 QKYLHYAKEELEPYQVYVSADIYGQVGSSSDDMALGQFWEAVSSEVDYVSPMMYPSHYGK 293 Query: 347 GWFDVKDPDKNPYATIKGSMVDTHKKLDPLGSYKPIIRPWIQDFTASWLGSGHYVKYGKQ 406 G + + PD NPY TI S D+ + + + S IIRPWIQ FTA+W+ GH + YG Sbjct: 294 GVYGLAVPDANPYKTIYQSTKDSINRNNNIDS-PAIIRPWIQAFTAAWV-KGH-INYGPN 350 Query: 407 QVEDQIRALKEKNVDEFLLWNANNRY 432 +++DQ++A+K+ VDE++LW+ NRY Sbjct: 351 EIKDQVKAMKDLGVDEYILWSPTNRY 376 >ref|ZP_00144384.1| hypothetical protein [Fusobacterium nucleatum subsp. vincentii ATCC 49256] gb|EAA24029.1| hypothetical protein [Fusobacterium nucleatum subsp. vincentii ATCC 49256] Length = 323 Score = 227 bits (578), Expect = 5e-58, Method: Compositional matrix adjust. Identities = 131/322 (40%), Positives = 192/322 (59%), Gaps = 9/322 (2%) Query: 117 IYVTAYS-AGGSRMXXXXXXXXKTELNSMVIDIKDDAGYITYKTDNP--ELQKLGHPQPF 173 +YV+A+S A R+ K LN+ +ID+K D G +T+ + + K + P Sbjct: 1 MYVSAHSVALKGRLDELIELAKKNNLNAFIIDVKGDYGELTFPMSDEINKYTKSANKNPI 60 Query: 174 IGDINQLMARLKKHDVYPIARIVVFKDSVLAKKKPELSFVNANG-SVWTNKGGDSFVNPY 232 I DI ++ +LK + +Y IARIV FKD++ AK+ P+ V +G +TN G +V+ Y Sbjct: 61 IKDIEPVIKKLKDNGIYAIARIVSFKDTIYAKENPDKIIVYKDGGKAFTNSDGLVWVSAY 120 Query: 233 NQDVWKYNVDIAKEAVKLGFKEIQFDYVRFP-EGFEKRAETLKYTKSDR-PRVEIISDFV 290 ++++W+YNV +AKEA K GF EIQFDYVRFP K + L Y +D + E I ++ Sbjct: 121 DKNLWEYNVTVAKEAAKAGFNEIQFDYVRFPASNGGKLDKVLNYRNTDNLTKAEAIQKYL 180 Query: 291 KYAKSELGPLGVRVSVDIFGYAASVPAAEGIGQDFVKISKNVDVISPMVYPSHYSTGWFD 350 YAK EL V VS DI+G S +GQ + +S VD +SPM+YPSHY G + Sbjct: 181 HYAKEELESYDVYVSADIYGQVGSSSDDMALGQFWEAVSSEVDYVSPMMYPSHYGKGVYG 240 Query: 351 VKDPDKNPYATIKGSMVDTHKKLDPLGSYKPIIRPWIQDFTASWLGSGHYVKYGKQQVED 410 + PD NPY TI S D+ + + + S IIRPWIQ FTA+W+ GH + YG +++D Sbjct: 241 LAVPDANPYKTIYASTKDSINRNNNIDS-PAIIRPWIQAFTAAWV-KGH-INYGPNEIKD 297 Query: 411 QIRALKEKNVDEFLLWNANNRY 432 Q++A+K+ VDE++LW+ NRY Sbjct: 298 QVKAMKDLGVDEYILWSPTNRY 319 Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF Posted date: Mar 24, 2004 1:53 AM Number of letters in database: 757,237,578 Number of sequences in database: 2,715,099 Lambda K H 0.315 0.133 0.396 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 2715099 Number of Hits to DB: 703,636,244 Number of extensions: 30682815 Number of successful extensions: 101143 Number of sequences better than 1.0e-05: 30 Number of HSP's gapped: 101074 Number of HSP's successfully gapped: 30 Length of query: 440 Length of database: 757,237,578 Length adjustment: 129 Effective length of query: 311 Effective length of database: 406,989,807 Effective search space: 126573829977 Effective search space used: 126573829977 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 42 (22.0 bits) S2: 127 (53.5 bits)