BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0345.0029.p (555 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF 2,715,099 sequences; 757,237,578 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|NP_388339.1| similar to ATP-dependent RNA helicase [Bacillus... 548 e-154 ref|NP_654177.1| DEAD, DEAD/DEAH box helicase [Bacillus anthraci... 545 e-153 ref|NP_976595.1| ATP-dependent RNA helicase, DEAD/DEAH box famil... 544 e-153 ref|NP_691530.1| ATP-dependent RNA helicase [Oceanobacillus ihey... 533 e-150 ref|NP_470201.1| similar to ATP-dependent RNA helicase [Listeria... 531 e-149 >ref|NP_388339.1| similar to ATP-dependent RNA helicase [Bacillus subtilis] pir||D69772 ATP-dependent RNA helicase homolog ydbR - Bacillus subtilis dbj|BAA19295.1| ATP-DEPENDENT RNA HELICASE DEAD HOMOLOG. [Bacillus subtilis] emb|CAB12265.1| ydbR [Bacillus subtilis subsp. subtilis str. 168] Length = 511 Score = 548 bits (1413), Expect = e-154, Method: Compositional matrix adjust. Identities = 267/448 (59%), Positives = 346/448 (77%), Gaps = 2/448 (0%) Query: 1 MNNLK-TFAEFGLEPKVLQAITELGFEEATPIQEQAIPIALTGSDLIGQAQTGTGKTAAF 59 +NNL TF +F L +++AI +GFEEATPIQ Q IP+ L+ D+IGQAQTGTGKTAAF Sbjct: 15 LNNLTITFQDFNLSSDLMKAINRMGFEEATPIQAQTIPLGLSNKDVIGQAQTGTGKTAAF 74 Query: 60 GIPLISKIAREEEKILALVMTPTRELAIQVAEEIGKLTRFKGLRSLAIYGGQDIGRQIRG 119 GIPL+ KI E I A+V+ PTRELAIQV+EE+ K+ + K + L IYGGQDIGRQIR Sbjct: 75 GIPLVEKINPESPNIQAIVIAPTRELAIQVSEELYKIGQDKRAKVLPIYGGQDIGRQIRA 134 Query: 120 LKKKPQIIIGTPGRLLDHINRKTIRLDDVQTIVLDEADEMLDMGFMEDIQTILKLVPEER 179 LKK P II+GTPGRLLDHINR+TIRL++V T+V+DEADEML+MGF++DI++IL VP E Sbjct: 135 LKKNPNIIVGTPGRLLDHINRRTIRLNNVNTVVMDEADEMLNMGFIDDIESILSNVPSEH 194 Query: 180 QTMLFSATMPPNIQRLAQQFLKNPQHVSVIPKQISAPLIDQAYIEVPERQKFEALSRLID 239 QT+LFSATMP I+R+A++F+ P+HV V K+++ I Q Y+EV ER+KF+ L+RL+D Sbjct: 195 QTLLFSATMPAPIKRIAERFMTEPEHVKVKAKEMTVSNIQQFYLEVQERKKFDTLTRLLD 254 Query: 240 MESPDLAIVFGRTKRRVDELAEGLQKRGYSADGLHGDLSQNQRDAVMRKFRDGSIDVLVA 299 ++SP+LAIVFGRTKRRVDELAE L RGY+A+G+HGDL+Q +R +RKF++G+I+VLVA Sbjct: 255 IQSPELAIVFGRTKRRVDELAEALNLRGYAAEGIHGDLTQAKRMVALRKFKEGAIEVLVA 314 Query: 300 TDVAARGLDVSGVTHVINFDLPQDPESYVHRIGRTGRAGKEGTAWSFVTPREMDHLHLIE 359 TDVAARGLD+SGVTHV NFD+PQDPESYVHRIGRTGRAGK G A +F+TPRE L IE Sbjct: 315 TDVAARGLDISGVTHVYNFDVPQDPESYVHRIGRTGRAGKTGMAMTFITPREKSMLRAIE 374 Query: 360 RVTRHRITRKPLPTMAEAIEGKQRITAERLLAMVEGGGELNEYKGIAIQLLEQYDSVQLL 419 + T+ ++ R PT+ EA+EG+Q++T ERL + LN Y A +LLE +D+V ++ Sbjct: 375 QTTKRKMDRMKEPTLDEALEGQQQVTVERLRTTI-SENNLNFYMTAAAELLEDHDAVTVV 433 Query: 420 TAAMKLLTGDTKDAQVELTPEDPIRVKR 447 AA+K+ T + D V LT E P+ KR Sbjct: 434 AAAIKMATKEPDDTPVRLTDEAPMVSKR 461 >ref|NP_654177.1| DEAD, DEAD/DEAH box helicase [Bacillus anthracis A2012] ref|NP_842800.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Bacillus anthracis str. Ames] gb|AAP24286.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Bacillus anthracis str. Ames] Length = 528 Score = 545 bits (1404), Expect = e-153, Method: Compositional matrix adjust. Identities = 264/440 (60%), Positives = 345/440 (78%), Gaps = 1/440 (0%) Query: 4 LKTFAEFGLEPKVLQAITELGFEEATPIQEQAIPIALTGSDLIGQAQTGTGKTAAFGIPL 63 + TF E GL +LQ++ +GFEEATPIQ + IP AL G D+IGQAQTGTGKTAAFG+PL Sbjct: 1 MTTFRELGLSDSLLQSVESMGFEEATPIQAETIPHALQGKDIIGQAQTGTGKTAAFGLPL 60 Query: 64 ISKIAREEEKILALVMTPTRELAIQVAEEIGKLTRFKGLRSLAIYGGQDIGRQIRGLKKK 123 + K+ +E + +V+ PTRELAIQV EE+ K+ + K +R L IYGGQDI RQIR LKK Sbjct: 61 LDKVDTHKESVQGIVIAPTRELAIQVGEELYKIGKHKRVRILPIYGGQDINRQIRALKKH 120 Query: 124 PQIIIGTPGRLLDHINRKTIRLDDVQTIVLDEADEMLDMGFMEDIQTILKLVPEERQTML 183 P II+GTPGR+LDHINRKT+RL +V+T+VLDEADEML+MGF+EDI+ IL VPE QT+L Sbjct: 121 PHIIVGTPGRILDHINRKTLRLQNVETVVLDEADEMLNMGFIEDIEAILTDVPETHQTLL 180 Query: 184 FSATMPPNIQRLAQQFLKNPQHVSVIPKQISAPLIDQAYIEVPERQKFEALSRLIDMESP 243 FSATMP I+R+A++F+ PQH+ V K+++ P I Q Y+EV E++KF+ L+RL+D++SP Sbjct: 181 FSATMPDPIRRIAERFMTEPQHIKVKAKEVTMPNIQQFYLEVQEKKKFDVLTRLLDIQSP 240 Query: 244 DLAIVFGRTKRRVDELAEGLQKRGYSADGLHGDLSQNQRDAVMRKFRDGSIDVLVATDVA 303 +LAIVFGRTKRRVDEL+E L RGY+A+G+HGDL+Q +R +V+RKF++GSI+VLVATDVA Sbjct: 241 ELAIVFGRTKRRVDELSEALNLRGYAAEGIHGDLTQAKRMSVLRKFKEGSIEVLVATDVA 300 Query: 304 ARGLDVSGVTHVINFDLPQDPESYVHRIGRTGRAGKEGTAWSFVTPREMDHLHLIERVTR 363 ARGLD+SGVTHV NFD+PQDPESYVHRIGRTGRAGK+G A FVTPRE L IER T+ Sbjct: 301 ARGLDISGVTHVYNFDIPQDPESYVHRIGRTGRAGKKGIAMLFVTPRESGQLKNIERTTK 360 Query: 364 HRITRKPLPTMAEAIEGKQRITAERLLAMVEGGGELNEYKGIAIQLLEQYDSVQLLTAAM 423 ++ R PT+ EA+EG+QR+ AE+L + +E L YK IA ++LE+ DSV ++ AA+ Sbjct: 361 RKMDRMDAPTLDEALEGQQRLIAEKLQSTIENEN-LAYYKRIAEEMLEENDSVTVVAAAL 419 Query: 424 KLLTGDTKDAQVELTPEDPI 443 K++T + + LT E P+ Sbjct: 420 KMMTKEPDTTPIALTSEPPV 439 >ref|NP_976595.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Bacillus cereus ATCC 10987] gb|AAS39203.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Bacillus cereus ATCC 10987] Length = 525 Score = 544 bits (1401), Expect = e-153, Method: Compositional matrix adjust. Identities = 264/440 (60%), Positives = 344/440 (78%), Gaps = 1/440 (0%) Query: 4 LKTFAEFGLEPKVLQAITELGFEEATPIQEQAIPIALTGSDLIGQAQTGTGKTAAFGIPL 63 + TF E GL +LQ++ +GFEEATPIQ + IP AL G D+IGQAQTGTGKTAAFG+PL Sbjct: 1 MTTFRELGLSDSLLQSVESMGFEEATPIQAETIPHALQGKDIIGQAQTGTGKTAAFGLPL 60 Query: 64 ISKIAREEEKILALVMTPTRELAIQVAEEIGKLTRFKGLRSLAIYGGQDIGRQIRGLKKK 123 + K+ +E + +V+ PTRELAIQV EE+ K+ + K +R L IYGGQDI RQIR LKK Sbjct: 61 LDKVDTHKESVQGIVIAPTRELAIQVGEELYKIGKHKRVRILPIYGGQDINRQIRALKKH 120 Query: 124 PQIIIGTPGRLLDHINRKTIRLDDVQTIVLDEADEMLDMGFMEDIQTILKLVPEERQTML 183 P II+GTPGR+LDHINRKT+RL +V+T+VLDEADEML+MGF+EDI+ IL VPE QT+L Sbjct: 121 PHIIVGTPGRILDHINRKTLRLQNVETVVLDEADEMLNMGFIEDIEAILTDVPETHQTLL 180 Query: 184 FSATMPPNIQRLAQQFLKNPQHVSVIPKQISAPLIDQAYIEVPERQKFEALSRLIDMESP 243 FSATMP I+R+A++F+ PQH+ V K+++ P I Q Y+EV E++KF+ L+RL+D++SP Sbjct: 181 FSATMPDPIRRIAERFMTEPQHIKVKAKEVTMPNIQQFYLEVQEKKKFDVLTRLLDIQSP 240 Query: 244 DLAIVFGRTKRRVDELAEGLQKRGYSADGLHGDLSQNQRDAVMRKFRDGSIDVLVATDVA 303 +LAIVFGRTKRRVDEL+E L RGY+A+G+HGDL+Q +R +V+RKF++GSI+VLVATDVA Sbjct: 241 ELAIVFGRTKRRVDELSEALNLRGYAAEGIHGDLTQAKRMSVLRKFKEGSIEVLVATDVA 300 Query: 304 ARGLDVSGVTHVINFDLPQDPESYVHRIGRTGRAGKEGTAWSFVTPREMDHLHLIERVTR 363 ARGLD+SGVTHV NFD+PQDPESYVHRIGRTGRAGK+G A FVTPRE L IER T+ Sbjct: 301 ARGLDISGVTHVYNFDIPQDPESYVHRIGRTGRAGKKGIAMLFVTPRESGQLKNIERTTK 360 Query: 364 HRITRKPLPTMAEAIEGKQRITAERLLAMVEGGGELNEYKGIAIQLLEQYDSVQLLTAAM 423 ++ R PT+ EA+EG+QR+ AE+L +E L YK IA ++LE+ DSV ++ AA+ Sbjct: 361 RKMDRMDAPTLDEALEGQQRLIAEKLQNTIENEN-LAYYKRIAEEMLEENDSVTVVAAAL 419 Query: 424 KLLTGDTKDAQVELTPEDPI 443 K++T + + LT E P+ Sbjct: 420 KMMTKEPDTTPIALTSEPPV 439 >ref|NP_691530.1| ATP-dependent RNA helicase [Oceanobacillus iheyensis HTE831] dbj|BAC12565.1| ATP-dependent RNA helicase [Oceanobacillus iheyensis HTE831] Length = 495 Score = 533 bits (1373), Expect = e-150, Method: Compositional matrix adjust. Identities = 255/453 (56%), Positives = 347/453 (76%), Gaps = 1/453 (0%) Query: 4 LKTFAEFGLEPKVLQAITELGFEEATPIQEQAIPIALTGSDLIGQAQTGTGKTAAFGIPL 63 + F E G+ +++A+ ++GFEEATPIQ + IP AL G D+IGQAQTGTGKTAAFGIPL Sbjct: 1 MTKFNELGVSAPIMKALEKMGFEEATPIQAETIPHALEGHDVIGQAQTGTGKTAAFGIPL 60 Query: 64 ISKIAREEEKILALVMTPTRELAIQVAEEIGKLTRFKGLRSLAIYGGQDIGRQIRGLKKK 123 I+KI + K+ L++ PTRELAIQVAEEI +L +FK +R+LAIYGGQ + RQIR LK Sbjct: 61 INKINAKLRKVQGLIVAPTRELAIQVAEEINRLAKFKSVRALAIYGGQPMDRQIRALKDG 120 Query: 124 PQIIIGTPGRLLDHINRKTIRLDDVQTIVLDEADEMLDMGFMEDIQTILKLVPEERQTML 183 PQI++ TPGRLLDH+ RKTIR+D V T VLDEADEML+MGF++DI+ ILK +PEERQT+L Sbjct: 121 PQIVVATPGRLLDHMRRKTIRIDQVHTAVLDEADEMLNMGFIDDIREILKGIPEERQTLL 180 Query: 184 FSATMPPNIQRLAQQFLKNPQHVSVIPKQISAPLIDQAYIEVPERQKFEALSRLIDMESP 243 FSATMP I+ +A +K P+ V V K+++ IDQ +IE+PE+ KF+ L+ +D+ SP Sbjct: 181 FSATMPKEIRNIATTLMKEPKEVKVKAKEMTVENIDQYFIEIPEKYKFDTLNNHLDINSP 240 Query: 244 DLAIVFGRTKRRVDELAEGLQKRGYSADGLHGDLSQNQRDAVMRKFRDGSIDVLVATDVA 303 +LAI+F RTK+RVDE+AEGLQ RGY ++G+HGDL+Q +R +V++KF+ G +DVLVATDVA Sbjct: 241 ELAIIFARTKKRVDEVAEGLQARGYRSEGIHGDLTQGKRMSVLKKFKQGRVDVLVATDVA 300 Query: 304 ARGLDVSGVTHVINFDLPQDPESYVHRIGRTGRAGKEGTAWSFVTPREMDHLHLIERVTR 363 ARGLD+SGVTHV NFD+PQDPESYVHRIGRTGRAGK G A SF+TPREM HL+LIE+ T+ Sbjct: 301 ARGLDISGVTHVYNFDIPQDPESYVHRIGRTGRAGKMGEAISFITPREMAHLNLIEQTTK 360 Query: 364 HRITRKPLPTMAEAIEGKQRITAERLLAMVEGGGELNEYKGIAIQLLEQYDSVQLLTAAM 423 ++ R PT +A G+Q++T E+L + +L Y+ A +LL++YDS+ +++AA+ Sbjct: 361 SKMKRMAPPTNQDARRGQQQVTIEKLKNAI-NEKDLKVYEDAAKELLDEYDSITVVSAAI 419 Query: 424 KLLTGDTKDAQVELTPEDPIRVKRRGGKNDIRS 456 ++T + +D V ++ PI VK+ + D ++ Sbjct: 420 SMMTKERRDTPVRISSVAPISVKKAKNQKDNKT 452 >ref|NP_470201.1| similar to ATP-dependent RNA helicase [Listeria innocua] pir||AC1540 ATP-dependent RNA helicase homolog lin0859 [imported] - Listeria innocua (strain Clip11262) emb|CAC96091.1| lin0859 [Listeria innocua] Length = 516 Score = 531 bits (1367), Expect = e-149, Method: Compositional matrix adjust. Identities = 253/441 (57%), Positives = 346/441 (78%), Gaps = 3/441 (0%) Query: 4 LKTFAEFGLEPKVLQAITELGFEEATPIQEQAIPIALTGSDLIGQAQTGTGKTAAFGIPL 63 + F+EFGL+ K+++++ +GFEEATPIQE+ IP+ L G DLIGQAQTGTGKTAAFG+P+ Sbjct: 1 MTKFSEFGLDEKIVKSVNRMGFEEATPIQEKTIPLGLAGKDLIGQAQTGTGKTAAFGLPM 60 Query: 64 ISKIAREEEKILALVMTPTRELAIQVAEEIGKLTRFKGLRSLAIYGGQDIGRQIRGLKKK 123 I KI ++ + AL++ PTRELAIQV+EE+ KL+ K +R LA+YGG DI RQIR LKK Sbjct: 61 IHKIDQKSNNVQALIIAPTRELAIQVSEELYKLSYDKHVRVLAVYGGSDISRQIRSLKKN 120 Query: 124 PQIIIGTPGRLLDHINRKTIRLDDVQTIVLDEADEMLDMGFMEDIQTILKLVPEERQTML 183 PQI++GTPGR+LDHINR+T++LD V+T+VLDEADEML+MGF++DI+TILK VP ERQT+L Sbjct: 121 PQIVVGTPGRILDHINRRTLKLDHVETLVLDEADEMLNMGFIDDIETILKEVPAERQTLL 180 Query: 184 FSATMPPNIQRLAQQFLKNPQHVSVIPKQISAPLIDQAYIEVPERQKFEALSRLIDMESP 243 FSATMP I+R+ ++F+ +P+ + + K+++A LI+Q +++V E++KF+ LSRL+D+++P Sbjct: 181 FSATMPDPIRRIGERFMHSPELIRIKAKEMTALLIEQFFVKVHEKEKFDVLSRLLDVQAP 240 Query: 244 DLAIVFGRTKRRVDELAEGLQKRGYSADGLHGDLSQNQRDAVMRKFRDGSIDVLVATDVA 303 +LAIVFGRTKRRVDEL+ L RGY A+G+HGDL+Q +R +V+RKF++G IDVLVATDVA Sbjct: 241 ELAIVFGRTKRRVDELSRALDMRGYVAEGIHGDLTQAKRMSVLRKFKEGKIDVLVATDVA 300 Query: 304 ARGLDVSGVTHVINFDLPQDPESYVHRIGRTGRAGKEGTAWSFVTPREMDHLHLIERVTR 363 ARGLD+SGVTHV N+D+PQDPESYVHRIGRTGRAGKEG A +FV PREM +L ++E T+ Sbjct: 301 ARGLDISGVTHVYNYDIPQDPESYVHRIGRTGRAGKEGMAITFVQPREMGYLRIVEETTK 360 Query: 364 HRITRKPLPTMAEAIEGKQRITAERLL-AMVEGGGELNEYKGIAIQLLEQYDSVQLLTAA 422 R+ PT EA G+ R+ E++ A+ E L +YK A +LLE+YD+ + A Sbjct: 361 KRMQPLQAPTWDEAFAGQLRVATEKIQEAITEEN--LADYKTFANELLEKYDATDIAAAM 418 Query: 423 MKLLTGDTKDAQVELTPEDPI 443 +K+L + V +T E P+ Sbjct: 419 LKMLAKEPDKTPVHITEERPL 439 Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF Posted date: Mar 24, 2004 1:53 AM Number of letters in database: 757,237,578 Number of sequences in database: 2,715,099 Lambda K H 0.318 0.135 0.376 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 2715099 Number of Hits to DB: 697,282,633 Number of extensions: 27088315 Number of successful extensions: 86229 Number of sequences better than 1.0e-05: 2616 Number of HSP's gapped: 81734 Number of HSP's successfully gapped: 2756 Length of query: 555 Length of database: 757,237,578 Length adjustment: 131 Effective length of query: 424 Effective length of database: 401,559,609 Effective search space: 170261274216 Effective search space used: 170261274216 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 129 (54.3 bits)