BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0345.0027.p
         (127 letters)

Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF 
           2,715,099 sequences; 757,237,578 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|NP_244013.1| BH3147~unknown [Bacillus halodurans] >gi|253704...    52   5e-06

>ref|NP_244013.1| BH3147~unknown [Bacillus halodurans]
 pir||C84043 hypothetical protein BH3147 [imported] - Bacillus halodurans
           (strain C-125)
 dbj|BAB06866.1| BH3147 [Bacillus halodurans]
          Length = 133

 Score = 52.0 bits (123), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 37/123 (30%), Positives = 63/123 (51%), Gaps = 6/123 (4%)

Query: 1   LKRTLVGLFRSHDGTSDRAKDPALKTRYYNLSRDKAWDEVSSTLKKIPGYKVLHEVESVG 60
            + TL  L  S   T++   +P+L+T YY  ++DKA   V   +++  G+ V    +  G
Sbjct: 3   FRETLSQLVSSRTETTEHHSNPSLQTHYYKTTKDKAIAAVERVMQQ-SGFTVKRVEQERG 61

Query: 61  EITLEKRTGFGRTLDITVSVLNTSPVRCAVDIYSASRGSL--GDLGANYRVIQRLYQSLD 118
           E+  +  +G    L  T+ ++   P R AVD +S S  ++   D G + + I  LY+ LD
Sbjct: 62  EVIAQSTSGQKSLLVATIVMVK--PFRTAVD-FSCSTDTILPSDFGHSKKRILSLYEQLD 118

Query: 119 KKL 121
           K+L
Sbjct: 119 KEL 121


  Database: All non-redundant GenBank CDS
  translations+PDB+SwissProt+PIR+PRF
    Posted date:  Mar 24, 2004  1:53 AM
  Number of letters in database: 757,237,578
  Number of sequences in database:  2,715,099
  
Lambda     K      H
   0.316    0.135    0.382 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 2715099
Number of Hits to DB: 185,329,094
Number of extensions: 6929218
Number of successful extensions: 16880
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 16881
Number of HSP's successfully gapped: 1
Length of query: 127
Length of database: 757,237,578
Length adjustment: 90
Effective length of query: 37
Effective length of database: 512,878,668
Effective search space: 18976510716
Effective search space used: 18976510716
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 120 (50.8 bits)