BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0345.0025.p (208 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF 2,715,099 sequences; 757,237,578 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|NP_388342.1| similar to hypothetical proteins [Bacillus subt... 119 3e-26 ref|NP_241383.1| BH0517~unknown conserved protein [Bacillus halo... 106 4e-22 ref|NP_691539.1| hypothetical protein OB0618 [Oceanobacillus ihe... 102 5e-21 ref|NP_390367.1| similar to hypothetical proteins [Bacillus subt... 97 3e-19 gb|EAK58085.1| unknown [environmental sequence] 95 8e-19 >ref|NP_388342.1| similar to hypothetical proteins [Bacillus subtilis] pir||G69772 conserved hypothetical protein ydcA - Bacillus subtilis dbj|BAA19298.1| FUNCTION UNKNOWN, SIMILAR PRODUCT IN H. INFLUENZAE AND SYNECHOCYSTIS. [Bacillus subtilis] emb|CAB12268.1| ydcA [Bacillus subtilis subsp. subtilis str. 168] Length = 199 Score = 119 bits (299), Expect = 3e-26, Method: Compositional matrix adjust. Identities = 72/209 (34%), Positives = 110/209 (52%), Gaps = 13/209 (6%) Query: 2 IFIRYEKWKGYIRYYPVTCILILLNVLMFIVLTANGGSTNL--ETLLKYGATLNAGPEMD 59 +FIR E ++ +IR YPV ++ L ++++ + S L +T+ Y N G Sbjct: 1 MFIRTENFQTFIRLYPVVTFILALQAVLWLFFSLPAHSVVLWRDTVTGY----NLGVANG 56 Query: 60 EMWRYVTATFLHNGFAHLFFNCFALLVFAPPLERLMGWWRYALLYMAGGFIANYLXXXXX 119 E WR +T LH GF HL FN ++ +FAP LER++G R+ L+Y G I N Sbjct: 57 EWWRLITPILLHAGFTHLLFNSMSIFLFAPALERMLGKARFLLVYAGSGIIGN-----IG 111 Query: 120 XXXXXXXATVSVGASGAIYAVYGAFLYIALLQRGMMDENSRKTLYGLLVMGIIMSFATPY 179 V VGASGAI+ ++G +L++ L + ++ + K + LL ++MSF Sbjct: 112 TYVTEPLDYVHVGASGAIFGLFGVYLFMVLFRNELIGQEHSKMIITLLAFAVLMSFINSN 171 Query: 180 VNWMAHLSGLAAGFFLYGLIIRIFKRSRR 208 +N MAHL GL GF L L ++ K+ RR Sbjct: 172 INMMAHLFGLCGGFLLSFLCVQ--KKERR 198 >ref|NP_241383.1| BH0517~unknown conserved protein [Bacillus halodurans] pir||E83714 hypothetical protein BH0517 [imported] - Bacillus halodurans (strain C-125) dbj|BAB04236.1| BH0517~unknown conserved protein [Bacillus halodurans] Length = 248 Score = 106 bits (264), Expect = 4e-22, Method: Compositional matrix adjust. Identities = 59/192 (30%), Positives = 104/192 (54%), Gaps = 9/192 (4%) Query: 2 IFIRYEKWKGYIRYYPVTCILILLNVLMFI-VLTANGGSTNLETLLKYGATLNAGPEMDE 60 +FIR E + + R YP+ L+ +++ +F+ + GG+ T G N E Sbjct: 1 MFIRNESFYTFRRSYPIITALVFIHIALFVWIHLLPGGAWVYAT----GVGFNLAVSQGE 56 Query: 61 MWRYVTATFLHNGFAHLFFNCFALLVFAPPLERLMGWWRYALLYMAGGFIANYLXXXXXX 120 WR +T FLH HL FN FAL++F P LER++G ++ +Y+ GFIAN Sbjct: 57 YWRLITPVFLHVSIGHLVFNSFALVIFGPALERMLGKGKFLFVYLLSGFIAN----VATY 112 Query: 121 XXXXXXATVSVGASGAIYAVYGAFLYIALLQRGMMDENSRKTLYGLLVMGIIMSFATPYV 180 +GASGAI+ ++G F+Y+ + ++ ++D + + + ++++G++M+F + + Sbjct: 113 YLGGLAYPYHLGASGAIFGLFGIFVYMVIYRKDLIDPANTQLVITIIIIGLVMTFLSSNI 172 Query: 181 NWMAHLSGLAAG 192 N AHL G+ G Sbjct: 173 NVFAHLFGMIGG 184 >ref|NP_691539.1| hypothetical protein OB0618 [Oceanobacillus iheyensis HTE831] dbj|BAC12574.1| hypothetical conserved protein [Oceanobacillus iheyensis HTE831] Length = 258 Score = 102 bits (254), Expect = 5e-21, Method: Compositional matrix adjust. Identities = 58/204 (28%), Positives = 112/204 (54%), Gaps = 13/204 (6%) Query: 2 IFIRYEK-WKGYIRYYPVTCILILLNVLMFIVLTANGGSTNLET---LLKYGATLNAGPE 57 +FIR E+ K ++ YPV +L+++N I L A L+ + YG NA E Sbjct: 1 MFIRNERSIKEFMSLYPVVSVLVIIN----ITLWAINDLLQLQIGRFIEVYGIGFNAAIE 56 Query: 58 MDEMWRYVTATFLHNGFAHLFFNCFALLVFAPPLERLMGWWRYALLYMAGGFIANYLXXX 117 + WR +T FLH G H+ FN F+L++F P LE+++G +++ L Y+ AN Sbjct: 57 AGQWWRLITPIFLHGGLMHMLFNSFSLVLFGPALEQMLGRFKFILAYLGTAITAN----- 111 Query: 118 XXXXXXXXXATVSVGASGAIYAVYGAFLYIALLQRGMMDENSRKTLYGLLVMGIIMSFAT 177 + +GASGAI+ ++G ++++ + ++ ++D++S + + ++ +G++M+F Sbjct: 112 IAIFFLQPMSYAHLGASGAIFGLFGIYVFMVMYRKDLIDQSSSQMIAVIVGIGLVMTFIR 171 Query: 178 PYVNWMAHLSGLAAGFFLYGLIIR 201 P ++ + HL G +G L+++ Sbjct: 172 PNISILGHLFGFLSGIIYAPLLLK 195 >ref|NP_390367.1| similar to hypothetical proteins [Bacillus subtilis] sp|P54493|YQGP_BACSU Hypothetical protein yqgP pir||B69957 conserved hypothetical protein yqgP - Bacillus subtilis dbj|BAA12519.1| YqgP [Bacillus subtilis] emb|CAB14418.1| yqgP [Bacillus subtilis subsp. subtilis str. 168] Length = 507 Score = 97.1 bits (240), Expect = 3e-19, Method: Compositional matrix adjust. Identities = 66/179 (36%), Positives = 92/179 (51%), Gaps = 13/179 (7%) Query: 19 TCILILLNVLMFIVLTANGGSTNLETLLKYGATLNAGPEMDEMWRYVTATFLHNGFAHLF 78 T + I L +LMF +L NGGSTN ETL+ +GA N+ E WR +T LH G AHL Sbjct: 180 TYLFIALQILMFSLLEINGGSTNTETLVAFGAKENSLIAQGEWWRLLTPIVLHIGIAHLA 239 Query: 79 FNCFALLVFAPPLERLMGWWRYALLYMAGGF---IANYLXXXXXXXXXXXXATVSVGASG 135 FN AL +ER+ G R+ L+Y+A G IA+++ S GASG Sbjct: 240 FNTLALWSVGTAVERMYGSGRFLLIYLAAGITGSIASFVFSPYP----------SAGASG 289 Query: 136 AIYAVYGAFLYIALLQRGMMDENSRKTLYGLLVMGIIMSFATPYVNWMAHLSGLAAGFF 194 AI+ GA LY+AL R M + ++++ + FA ++ H+ GL GFF Sbjct: 290 AIFGCLGALLYVALSNRKMFLRTIGTNIIVIIIINLGFGFAVSNIDNSGHIGGLIGGFF 348 >gb|EAK58085.1| unknown [environmental sequence] Length = 261 Score = 95.1 bits (235), Expect = 8e-19, Method: Compositional matrix adjust. Identities = 55/191 (28%), Positives = 98/191 (51%), Gaps = 3/191 (1%) Query: 5 RYEKWKGYIRYYPVTCILILLNVLMFIVLTANGGSTNLETLLKYGATLNAGPEMDEMWRY 64 + +K G+I+ YP+T +LI+ N+L++I+ +G S+N L+K GA + + WR+ Sbjct: 3 QNKKKTGFIKTYPITFLLIISNLLIYIIQEISGDSSNPSDLVKMGARYDIYVASGDWWRF 62 Query: 65 VTATFLHNGFAHLFFNCFALLVFAPPLERLMGWWRYALLYMAGGFIANYLXXXXXXXXXX 124 +T FLH GF HL N L +F +E+ +Y L+Y G +N Sbjct: 63 ITPNFLHIGFTHLLLNLAGLWIFGMLVEKDFSKPKYLLIYFFCGISSNIFSYSSGSWFGF 122 Query: 125 XXATVSVGASGAIYAVYGAFLYIALLQRGMMDENSRKTLY---GLLVMGIIMSFATPYVN 181 V GASGAI+ + GA+ ++ + ++ + + +L ++ + +I A V+ Sbjct: 123 TCGPVGAGASGAIFGLLGAYASYLIVNKNVLGKQGKDSLISIGAIIFINVIYGAAASGVD 182 Query: 182 WMAHLSGLAAG 192 +AH+SG+ G Sbjct: 183 HIAHISGIICG 193 Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF Posted date: Mar 24, 2004 1:53 AM Number of letters in database: 757,237,578 Number of sequences in database: 2,715,099 Lambda K H 0.332 0.145 0.465 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 2715099 Number of Hits to DB: 288,783,936 Number of extensions: 10465377 Number of successful extensions: 32068 Number of sequences better than 1.0e-05: 170 Number of HSP's gapped: 31958 Number of HSP's successfully gapped: 170 Length of query: 208 Length of database: 757,237,578 Length adjustment: 120 Effective length of query: 88 Effective length of database: 431,425,698 Effective search space: 37965461424 Effective search space used: 37965461424 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 15 ( 7.2 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (21.9 bits) S2: 123 (52.0 bits)