BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0345.0001.p (203 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF 2,715,099 sequences; 757,237,578 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|NP_617270.1| conserved hypothetical protein [Methanosarcina ... 111 8e-24 ref|NP_830806.1| hypothetical Membrane Associated Protein [Bacil... 106 3e-22 ref|ZP_00076896.1| COG4717: Uncharacterized conserved protein [M... 106 3e-22 ref|NP_977433.1| conserved hypothetical protein [Bacillus cereus... 103 3e-21 ref|NP_654934.1| hypothetical protein predicted by GeneMark [Bac... 103 3e-21 >ref|NP_617270.1| conserved hypothetical protein [Methanosarcina acetivorans str. C2A] gb|AAM05750.1| conserved hypothetical protein [Methanosarcina acetivorans str. C2A] Length = 1300 Score = 111 bits (278), Expect = 8e-24, Method: Compositional matrix adjust. Identities = 70/171 (40%), Positives = 94/171 (54%), Gaps = 16/171 (9%) Query: 1 VKIEELQIGGYGRLHNREMK-LDSGVSLLYGRNEAGKSTTLQFIRAMLFGIPG-RVNPQE 58 +KI+ + I G+G+ ++ L SG+ +L G NEAGKST FIR M FGIP R N Sbjct: 10 MKIDAIHIDGFGKFSRLSVENLPSGLVILTGANEAGKSTLFTFIRRMFFGIPNTRCN--- 66 Query: 59 RYEPAQGGQHGGMLAARDSEGGQWRIRRYMTGGETPGRSEKLHITVSHPDGRTEEAGQTE 118 Y P +GGQHGG L DSEG +W I R S K + V PDG T +TE Sbjct: 67 LYPPLEGGQHGGRLVVIDSEGERWVIER--------NTSRKDDVKVVLPDGNT--GSKTE 116 Query: 119 MERRLLGGISRSMFRQLFAVSLDELQELGALQSEEMSSYLFHAGMGGGGEI 169 + +LLG R++F ++A L+ELQ L + ++S L+ AG G G I Sbjct: 117 L-LKLLGHADRNIFENIYAFGLEELQSFETLNDQSINSKLYSAGTGVGVSI 166 >ref|NP_830806.1| hypothetical Membrane Associated Protein [Bacillus cereus ATCC 14579] gb|AAP08007.1| hypothetical Membrane Associated Protein [Bacillus cereus ATCC 14579] Length = 974 Score = 106 bits (265), Expect = 3e-22, Method: Compositional matrix adjust. Identities = 64/180 (35%), Positives = 105/180 (58%), Gaps = 17/180 (9%) Query: 1 VKIEELQIGGYGRLHNREMKLDSGVSLLYGRNEAGKSTTLQFIRAMLFGIPGRVNPQERY 60 ++IE+L I GYG+L N EM L S +++LYG NEAGKST F++++LFG P R Q RY Sbjct: 1 MRIEKLHIYGYGKLENVEMDL-SLLTVLYGENEAGKSTIRSFMKSILFGFPTR--GQRRY 57 Query: 61 EPAQGGQHGGMLAARDSEGGQWRIRRY--MTGGETPGRSEKLHITVSHPDGRTEEAGQTE 118 EP +GG++GG + + + G+ +I R GE +TV DG+T G E Sbjct: 58 EPKEGGKYGGAMTVQTEQYGRLKIERLPKTAAGE---------VTVYFEDGKT---GGEE 105 Query: 119 MERRLLGGISRSMFRQLFAVSLDELQELGALQSEEMSSYLFHAGMGGGGEIMRAERRLQQ 178 + +L G++ S+F +F+ + LQ + L ++ +YLF A G +++ +++L++ Sbjct: 106 ILNDILSGMNESLFESVFSFDMHGLQNIHQLGEADIGNYLFSASAVGSDALLQLDKKLEK 165 >ref|ZP_00076896.1| COG4717: Uncharacterized conserved protein [Methanosarcina barkeri] Length = 1292 Score = 106 bits (265), Expect = 3e-22, Method: Compositional matrix adjust. Identities = 66/170 (38%), Positives = 94/170 (55%), Gaps = 13/170 (7%) Query: 1 VKIEELQIGGYGRLHNREMK-LDSGVSLLYGRNEAGKSTTLQFIRAMLFGIPGRVNPQER 59 ++I + I G+G+ + M+ L SG+ + G NEAGKST FIR M FGIP Sbjct: 9 MQINAIHIDGFGKFSSLSMEGLPSGLVVFTGANEAGKSTLFTFIRRMFFGIPN-TRLCNL 67 Query: 60 YEPAQGGQHGGMLAARDSEGGQWRIRRYMTGGETPGRSEKLHITVSHPDGRTEEAGQTEM 119 Y P +GG+HGG LA DS G +W I R + GR E + + + PDG T G+ E+ Sbjct: 68 YPPLEGGKHGGRLAVVDSAGDRWVIER------SAGRKEDVKVVL--PDGNT--GGRAEL 117 Query: 120 ERRLLGGISRSMFRQLFAVSLDELQELGALQSEEMSSYLFHAGMGGGGEI 169 +LLG R++F ++A L+ELQ L + ++S L+ AG G G I Sbjct: 118 -LKLLGHADRNVFENIYAFGLEELQSFETLNDQSINSKLYSAGTGVGVSI 166 >ref|NP_977433.1| conserved hypothetical protein [Bacillus cereus ATCC 10987] gb|AAS40041.1| conserved hypothetical protein [Bacillus cereus ATCC 10987] Length = 974 Score = 103 bits (256), Expect = 3e-21, Method: Compositional matrix adjust. Identities = 62/180 (34%), Positives = 104/180 (57%), Gaps = 17/180 (9%) Query: 1 VKIEELQIGGYGRLHNREMKLDSGVSLLYGRNEAGKSTTLQFIRAMLFGIPGRVNPQERY 60 +++E+L I GYG+L N EM L S +++LYG NEAGKST F++++LFG P R Q RY Sbjct: 1 MRMEKLHIYGYGKLENVEMDL-SMLTVLYGENEAGKSTIRSFMKSILFGFPTR--GQRRY 57 Query: 61 EPAQGGQHGGMLAARDSEGGQWRIRRY--MTGGETPGRSEKLHITVSHPDGRTEEAGQTE 118 EP +GG++GG + + + + +I R GE +TV DG+T G E Sbjct: 58 EPKEGGKYGGAITVQTEKYDRLKIERLPKTAAGE---------VTVYFEDGKT---GGEE 105 Query: 119 MERRLLGGISRSMFRQLFAVSLDELQELGALQSEEMSSYLFHAGMGGGGEIMRAERRLQQ 178 + +L G++ S+F +F+ + LQ + L ++ +YLF A G +++ +++L++ Sbjct: 106 ILHDILSGMNESLFESVFSFDMHGLQNIHQLGEADIGNYLFSASAVGSDALLQLDKKLEK 165 >ref|NP_654934.1| hypothetical protein predicted by GeneMark [Bacillus anthracis A2012] ref|NP_843510.1| conserved domain protein [Bacillus anthracis str. Ames] gb|AAP24996.1| conserved domain protein [Bacillus anthracis str. Ames] Length = 199 Score = 103 bits (256), Expect = 3e-21, Method: Compositional matrix adjust. Identities = 61/178 (34%), Positives = 106/178 (59%), Gaps = 13/178 (7%) Query: 1 VKIEELQIGGYGRLHNREMKLDSGVSLLYGRNEAGKSTTLQFIRAMLFGIPGRVNPQERY 60 +++E+L I GYG+L N E+ L S +++LYG NEAGKST F++++LFG P R Q RY Sbjct: 1 MRMEKLYIYGYGKLENVEIDL-SMLTVLYGENEAGKSTIRSFMKSILFGFPTR--GQRRY 57 Query: 61 EPAQGGQHGGMLAARDSEGGQWRIRRYMTGGETPGRSEKLHITVSHPDGRTEEAGQTEME 120 EP +GG++GG + + + G+ +I R P ++ +TV DG+T G E+ Sbjct: 58 EPKEGGKYGGAITVQTEKYGRLKIER------LP-KTAAGEVTVYFEDGKT---GGEEIL 107 Query: 121 RRLLGGISRSMFRQLFAVSLDELQELGALQSEEMSSYLFHAGMGGGGEIMRAERRLQQ 178 +L G++ S+F +F+ + LQ + L ++ +YLF A G +++ +++L++ Sbjct: 108 HDILTGMNESLFESVFSFDMHGLQNIHQLGEADIGNYLFSASAVGSDALLQLDKKLEK 165 Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF Posted date: Mar 24, 2004 1:53 AM Number of letters in database: 757,237,578 Number of sequences in database: 2,715,099 Lambda K H 0.316 0.135 0.385 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 2715099 Number of Hits to DB: 301,720,548 Number of extensions: 12477924 Number of successful extensions: 31497 Number of sequences better than 1.0e-05: 27 Number of HSP's gapped: 31482 Number of HSP's successfully gapped: 27 Length of query: 203 Length of database: 757,237,578 Length adjustment: 120 Effective length of query: 83 Effective length of database: 431,425,698 Effective search space: 35808332934 Effective search space used: 35808332934 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.6 bits) S2: 123 (52.0 bits)