BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0344.0003.p (288 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF 2,715,099 sequences; 757,237,578 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|NP_694043.1| sugar ABC transporter permease [Oceanobacillus ... 192 5e-48 ref|NP_691697.1| sugar ABC transporter permease [Oceanobacillus ... 179 4e-44 ref|NP_623884.1| Sugar permeases [Thermoanaerobacter tengcongens... 173 4e-42 ref|NP_244549.1| sugar ABC transporter (permease) [Bacillus halo... 171 2e-41 ref|NP_391138.1| similar to sugar permease [Bacillus subtilis] >... 159 5e-38 >ref|NP_694043.1| sugar ABC transporter permease [Oceanobacillus iheyensis HTE831] dbj|BAC15077.1| sugar ABC transporter permease [Oceanobacillus iheyensis HTE831] Length = 273 Score = 192 bits (489), Expect = 5e-48, Method: Compositional matrix adjust. Identities = 96/274 (35%), Positives = 155/274 (56%), Gaps = 2/274 (0%) Query: 15 RSIGQFLLQIPLWLYFAVSIYPLFWMISYSLKNNDEIFVTNPFGLPTHFRFENYINAWTQ 74 +G LL I L + I+P+ W++S+SLK N EIF NPF LPT ++ENY+ + + Sbjct: 2 HRVGYILLYICLGVVGVFQIFPIIWLVSFSLKTNQEIFAGNPFALPTDPKWENYLKVF-E 60 Query: 75 FNIPRYFWNSFVVSIISTVXXXXXXXXXXXXXXRMQWRFRSAVRTYMLVGMFMPLQVIMI 134 I YFWNS +++++T+ RM+W+ S V +++G+ +P+ +I Sbjct: 61 GGIGTYFWNSIWITVVATILTILIASMATFAITRMKWKLSSFVLGIIMIGLMIPIHSALI 120 Query: 135 PLALLVRDFHLTNTYGALIIPYIAIGLPFSTMVFYGFLVSIPREIEEAACIDGASIYRLF 194 PL + + +L + ++++ Y+ LP + M+ GF ++PREIEEAA IDG+SI+RLF Sbjct: 121 PLYNMFLNVNLIDNPVSIVVTYMTYNLPITVMILLGFYTTLPREIEEAAIIDGSSIHRLF 180 Query: 195 LGVXXXXXXXXXXXXXXFQFLNNWNEFTLAYILISDENMKTLPLGLLFFQGSYSTDWGAM 254 + + NWNEF IS + KTL +G+ F G Y TDWGA+ Sbjct: 181 FKIILPLSAPIMSTTVIINMIYNWNEFVFVNTFISSDKFKTLTVGIQNFIGQYMTDWGAI 240 Query: 255 GAVMTIASLPMVLVYLLLSDQVERAMTVGSAVKG 288 GA + I+ LP+++ ++ SD++ ++ SAVKG Sbjct: 241 GATLVISVLPIIIAFIFFSDKIMEGLS-ASAVKG 273 >ref|NP_691697.1| sugar ABC transporter permease [Oceanobacillus iheyensis HTE831] dbj|BAC12732.1| sugar ABC transporter permease [Oceanobacillus iheyensis HTE831] Length = 290 Score = 179 bits (455), Expect = 4e-44, Method: Compositional matrix adjust. Identities = 96/287 (33%), Positives = 157/287 (54%), Gaps = 6/287 (2%) Query: 2 ERRTINHMSPKTFRSIGQFLLQIPLWLYFAVSIYPLFWMISYSLKNNDEIFVTNPFGLPT 61 RRT + K + + + ++ L L+ V++YP+ WM S K+ E F N FG P Sbjct: 10 NRRT----NGKLKKRLSRIIIYTLLGLFAIVNVYPIIWMAINSFKSEQE-FTVNQFGFPN 64 Query: 62 HFRFENYINAWTQFNIPRYFWNSFVVSIISTVXXXXXXXXXXXXXXRMQWRFRSAVRTYM 121 F ENY NAW N+ F NS V + +T+ R ++RF + T+ Sbjct: 65 EFILENYANAWEIANLGVLFKNSIFVCVTATLVTVIIGALASYFLARFKFRFNKIMYTFF 124 Query: 122 LVGMFMPLQVIMIPLALLVRDFHLTNTYGALIIPYIAIGLPFSTMVFYGFLVSIPREIEE 181 + G+ +P+ ++P+ +L+++ L NT L+ PY+A LP + + F+ + P++IEE Sbjct: 125 IFGLLIPIHATLVPMFILMKNLGLLNTEITLLFPYVAFHLPITIFILTSFMKAFPKDIEE 184 Query: 182 AACIDGASIYRLFLGVXXXXXXXXXXXXXXFQFLNNWNEFTLAYILISDENMKTLPLGLL 241 +A +DGA I+R+F + F+ NWNEF+ A +LI+D ++TLPLGL Sbjct: 185 SAIMDGAGIFRIFWSIILPMSRPAIATVVILNFIYNWNEFSFALVLINDPALQTLPLGLA 244 Query: 242 FFQGSYSTDWGAMGAVMTIASLPMVLVYLLLSDQVERAMTVGSAVKG 288 F G ++T++GA A +T++ +P+V+ YL L ++ MT G AVKG Sbjct: 245 NFAGQFTTNYGAQMAGLTMSLVPIVIFYLFLEKEIVNGMTSG-AVKG 290 >ref|NP_623884.1| Sugar permeases [Thermoanaerobacter tengcongensis] gb|AAM25488.1| Sugar permeases [Thermoanaerobacter tengcongensis] Length = 289 Score = 173 bits (438), Expect = 4e-42, Method: Compositional matrix adjust. Identities = 86/256 (33%), Positives = 148/256 (57%), Gaps = 1/256 (0%) Query: 33 SIYPLFWMISYSLKNNDEIFVTNPFGLPTHFRFENYINAWTQFNIPRYFWNSFVVSIIST 92 ++PL W+I +SL + +++ N +P+ +F+NY AW IP YF NS +V++ S Sbjct: 35 QLFPLVWLIDFSLCKSGDVYGANILKIPSPPQFQNYYIAWKDGKIPHYFINSVIVNVTSV 94 Query: 93 VXXXXXXXXXXXXXXRMQWRFRSAVRTYMLVGMFMPLQVIMIPLALLVRDFHLTNTYGAL 152 RM+W+ + V Y+L+G+ +P+ ++P ++ ++ H+ ++Y AL Sbjct: 95 GLTVILSLMMAYAFVRMKWKLSNKVLMYVLLGLMIPIHATLLPNFIIFKEIHILDSYLAL 154 Query: 153 IIPYIAIGLPFSTMVFYGFLVSIPREIEEAACIDGASIYRLFLGVXXXXXXXXXXXXXXF 212 I+PY+A LP + + GF+ SIPREIEE+A +DGA I+ + + Sbjct: 155 ILPYVAFSLPQAVFLMTGFIGSIPREIEESAVMDGAGIFTILFKIIFPLSTPAIVTVTVT 214 Query: 213 QFLNNWNEFTLAYILISDENMKTLPLGLLFFQGSYSTDWGAMGAVMTIASLPMVLVYLLL 272 FL WNEF +A ++ + +TLP + F G Y++++ AVMTI +LP ++VY+LL Sbjct: 215 TFLTTWNEFIMAATYLTSDKFRTLPFSVYNFAGQYASNYAVQFAVMTIVALPSLIVYILL 274 Query: 273 SDQVERAMTVGSAVKG 288 ++QV + +T+G A+KG Sbjct: 275 NEQVTKGVTLG-ALKG 289 >ref|NP_244549.1| sugar ABC transporter (permease) [Bacillus halodurans] pir||B84110 sugar ABC transporter (permease) BH3682 [imported] - Bacillus halodurans (strain C-125) dbj|BAB07401.1| sugar ABC transporter (permease) [Bacillus halodurans] Length = 293 Score = 171 bits (432), Expect = 2e-41, Method: Compositional matrix adjust. Identities = 90/246 (36%), Positives = 134/246 (54%), Gaps = 1/246 (0%) Query: 43 YSLKNNDEIFVTNPFGLPTHFRFENYINAWTQFNIPRYFWNSFVVSIISTVXXXXXXXXX 102 +SLK+N E+F P LPT ++ENY WT+ NI YF NS +V+ + + Sbjct: 49 FSLKDNQEVFNLPPLALPTDPKWENYAKVWTEGNIGLYFLNSVIVTGSAVILTVLLASFV 108 Query: 103 XXXXXRMQWRFRSAVRTYMLVGMFMPLQVIMIPLALLVRDFHLTNTYGALIIPYIAIGLP 162 RM+W+ V +VG+ +P+ +IPL + L + A+I+ Y A LP Sbjct: 109 TFALTRMRWKLSKLVLGLFMVGLMIPVHSTLIPLFNFFLNVGLMDHPLAIILTYTAFNLP 168 Query: 163 FSTMVFYGFLVSIPREIEEAACIDGASIYRLFLGVXXXXXXXXXXXXXXFQFLNNWNEFT 222 + M+ GF ++PRE+EEAA +DG SI+RLF + + NWNEF Sbjct: 169 LTIMILLGFYYTLPRELEEAAIMDGCSIHRLFFQIILPMTAPVVATTAIINMIYNWNEFV 228 Query: 223 LAYILISDENMKTLPLGLLFFQGSYSTDWGAMGAVMTIASLPMVLVYLLLSDQVERAMTV 282 IS + KTL +G+ F G YSTDWGA+GA + I+ LP++L ++ LS+++ +T Sbjct: 229 FVNTFISSDKYKTLTVGIQNFIGQYSTDWGAIGATLVISILPILLAFIFLSNRIVEGITA 288 Query: 283 GSAVKG 288 GS VKG Sbjct: 289 GS-VKG 293 >ref|NP_391138.1| similar to sugar permease [Bacillus subtilis] sp|O32154|YURM_BACSU Hypothetical ABC transporter permease protein yurM pir||D70018 sugar permease homolog yurM - Bacillus subtilis emb|CAB15248.1| yurM [Bacillus subtilis subsp. subtilis str. 168] Length = 300 Score = 159 bits (403), Expect = 5e-38, Method: Compositional matrix adjust. Identities = 90/279 (32%), Positives = 153/279 (54%), Gaps = 3/279 (1%) Query: 10 SPKTFRSIGQFLLQIPLWLYFAVSIYPLFWMISYSLKNNDEIFVTNPFGLPTHFRFENYI 69 P+ IG+ + + L+LY YPL WM+ + KN+D+IF + + LP+ + EN++ Sbjct: 25 KPRRKWYIGETSVWVFLFLYLIAIAYPLLWMVMSAFKNSDDIF-EHSWSLPSSWHPENFV 83 Query: 70 NAWTQFNIPRYFWNSFVVSIISTVXXXXXXXXXXXXXXRMQWRFRSAVRTYMLVGMFMPL 129 +AW Q I YF NS +V+ ++ V R +++ + L G+ + Sbjct: 84 SAWNQ-GISSYFMNSVIVTALTCVITVFISAWAAYGLSRFEFKGKGFFLVLCLGGLMLTP 142 Query: 130 QVIMIPLALLVRDFHLTNTYGALIIPYIAIGLPFSTMVFYGFLVSIPREIEEAACIDGAS 189 QV ++PL +++ L NTY ALI+PY A +PF+ ++ + +SI +E+EEAA +DG + Sbjct: 143 QVSLVPLYSIIQSLGLYNTYWALILPYAAYRIPFTIILIRSYFLSISKELEEAAYLDGCT 202 Query: 190 IYRLFLGVXXXXXXXXXXXXXXFQFLNNWNEFTLAYILISDENMKTLPLGLLFFQGSYST 249 + +F + + WNEF A I I DEN++T+P GL+ F+ + T Sbjct: 203 SFGVFFRIFLPMSVPILVTSGILTAYHTWNEFMFAIIFIDDENLRTIPAGLMQFRDALQT 262 Query: 250 DWGAMGAVMTIASLPMVLVYLLLSDQVERAMTVGSAVKG 288 DWG + A +TI++ P+++++LL+ R + GS VKG Sbjct: 263 DWGVLLAGLTISAAPIIILFLLMQKYFVRGIASGS-VKG 300 Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF Posted date: Mar 24, 2004 1:53 AM Number of letters in database: 757,237,578 Number of sequences in database: 2,715,099 Lambda K H 0.330 0.143 0.450 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 2715099 Number of Hits to DB: 377,910,129 Number of extensions: 14137077 Number of successful extensions: 45614 Number of sequences better than 1.0e-05: 1249 Number of HSP's gapped: 44229 Number of HSP's successfully gapped: 1255 Length of query: 288 Length of database: 757,237,578 Length adjustment: 124 Effective length of query: 164 Effective length of database: 420,565,302 Effective search space: 68972709528 Effective search space used: 68972709528 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 15 ( 7.2 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (21.9 bits) S2: 125 (52.8 bits)