BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0342.0045.p (317 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF 2,715,099 sequences; 757,237,578 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|NP_347620.1| ABC transporter, ATP-binding protein [Clostridi... 308 8e-83 ref|NP_908049.1| ABC TRANSPORT ATP-BINDING PROTEIN [Wolinella su... 285 9e-76 ref|NP_781979.1| ABC transporter ATP-binding protein [Clostridiu... 280 4e-74 ref|NP_281935.1| ABC transport system ATP-binding protein [Campy... 264 2e-69 ref|NP_742284.1| ABC transporter, ATP-binding protein [Pseudomon... 244 2e-63 >ref|NP_347620.1| ABC transporter, ATP-binding protein [Clostridium acetobutylicum] pir||E97021 ABC transporter, ATP-binding protein CAC0984 [imported] - Clostridium acetobutylicum gb|AAK78960.1| ABC transporter, ATP-binding protein [Clostridium acetobutylicum] Length = 320 Score = 308 bits (790), Expect = 8e-83, Method: Compositional matrix adjust. Identities = 154/317 (48%), Positives = 214/317 (67%), Gaps = 3/317 (0%) Query: 1 MIEIKELYKSFGDKPVLSGINVTIGDGDIYGLVGISGAGKSTLLRCINGLETFERGTLRV 60 MIEIK + K F VL +++ I G+I+G+VG SGAGKSTLLRCINGLET++ G + V Sbjct: 1 MIEIKNVSKYFSGNKVLKDVDLKIKGGEIFGIVGHSGAGKSTLLRCINGLETYDEGNVIV 60 Query: 61 NGTDISSLHGAELRKFRSGIGMIFQQFSLLERKTVYENIMFPMKCYNYKKAEADARIHEL 120 G D+ ++G LR+FR +GMIFQ F+LL RK VY NI P++ + K E +R+ EL Sbjct: 61 FGKDLKQINGKNLREFRKEVGMIFQNFNLLNRKDVYHNISLPLEVWGVPKNEIASRVKEL 120 Query: 121 LRLVELTDKIRSRPSQLSGGQKQRVAIARALAMNPKILLCDEATSALDPNITKSILALLK 180 L LV+LTDKI S+PS LSGGQKQRVAIARALA+NPKILLCDEATSALDPN TKSIL LL+ Sbjct: 121 LELVDLTDKIHSKPSNLSGGQKQRVAIARALALNPKILLCDEATSALDPNTTKSILNLLR 180 Query: 181 KINRELGITIVIVTHQMEVVKEVCTDMALLSKGELQISGSVQDIFLGRSETLAELLGSAG 240 IN +LGITIVIVTHQMEVVK +C +AL+ G ++ +G V+++FL S + +L+G + Sbjct: 181 TINSKLGITIVIVTHQMEVVKGICERVALIDAGVIKETGDVENLFLNPSSEMKKLIGQSD 240 Query: 241 ---MGQQGDKVVFEMVQRPGQNDLLSRFATATGIRFEVVWGGLDRYADSIAGAFTLAVDK 297 + ++G + + + L++ A + F +VWG L+R+ D + G+ + + + Sbjct: 241 DDVLPKEGINIRVIFPKNSSEGALITSMARELNVDFSIVWGKLERFRDDVLGSLVINISE 300 Query: 298 DDFPKAQAFLEDTDTEW 314 ++ +L + W Sbjct: 301 ENKEVICNYLVSHNAIW 317 >ref|NP_908049.1| ABC TRANSPORT ATP-BINDING PROTEIN [Wolinella succinogenes] emb|CAE10949.1| ABC TRANSPORT ATP-BINDING PROTEIN [Wolinella succinogenes] Length = 303 Score = 285 bits (729), Expect = 9e-76, Method: Compositional matrix adjust. Identities = 143/300 (47%), Positives = 200/300 (66%), Gaps = 1/300 (0%) Query: 16 VLSGINVTIGDGDIYGLVGISGAGKSTLLRCINGLETFERGTLRVNGTDISSLHGAELRK 75 +L I++ I G IYGLVG SGAGKSTLLR INGLE F+ G L V+G D+ SL G LR Sbjct: 1 MLDQISLEIPKGTIYGLVGHSGAGKSTLLRTINGLEGFDEGELWVDGVDLQSLQGDALRV 60 Query: 76 FRSGIGMIFQQFSLLERKTVYENIMFPMKCYNYKKAEADARIHELLRLVELTDKIRSRPS 135 FR IGMIFQ FSL+ R+ V+EN+ P++C+ Y +AE R+ LL LV L K S PS Sbjct: 61 FRKNIGMIFQHFSLMARQNVFENVALPLRCWKYPEAEIQKRVFNLLSLVGLESKSDSYPS 120 Query: 136 QLSGGQKQRVAIARALAMNPKILLCDEATSALDPNITKSILALLKKINRELGITIVIVTH 195 LSGGQKQRVAIARAL + P+ILL DEATSALDP++T+SIL LL+ IN+ELG+T+V+VTH Sbjct: 121 ALSGGQKQRVAIARALTLEPQILLSDEATSALDPSMTQSILDLLQTINQELGVTVVLVTH 180 Query: 196 QMEVVKEVCTDMALLSKGELQISGSVQDIFLGRSETLAELLG-SAGMGQQGDKVVFEMVQ 254 +MEVVK++C A L G+L SG+++++FL + LG S + ++G + + Sbjct: 181 EMEVVKKLCHHAAFLEGGKLLRSGNIEELFLQPDPKMRHFLGESEVLPKEGVNIRLYFPK 240 Query: 255 RPGQNDLLSRFATATGIRFEVVWGGLDRYADSIAGAFTLAVDKDDFPKAQAFLEDTDTEW 314 QN ++++ A + F +VWG L+R+ + + G+ + + + +A+ FLE + W Sbjct: 241 EVAQNPIITQMARQLSLDFSIVWGKLERFGEDVLGSLVINIPEARQEEAERFLESSGVRW 300 >ref|NP_781979.1| ABC transporter ATP-binding protein [Clostridium tetani E88] gb|AAO35916.1| ABC transporter ATP-binding protein [Clostridium tetani E88] Length = 318 Score = 280 bits (715), Expect = 4e-74, Method: Compositional matrix adjust. Identities = 134/315 (42%), Positives = 203/315 (64%), Gaps = 1/315 (0%) Query: 1 MIEIKELYKSFGDKPVLSGINVTIGDGDIYGLVGISGAGKSTLLRCINGLETFERGTLRV 60 MIEIK++ K FGD VL I++ I +G+++G++G SGAGKSTLLRC+NGLE ++ G+++V Sbjct: 1 MIEIKDVGKIFGDTKVLENISLDIKEGEVFGIIGRSGAGKSTLLRCLNGLENYDEGSIKV 60 Query: 61 NGTDISSLHGAELRKFRSGIGMIFQQFSLLERKTVYENIMFPMKCYNYKKAEADARIHEL 120 ++ L+ ELRK R +GMIFQ F+++ K +Y+N+ P++ + K D ++ EL Sbjct: 61 MDKEVKDLNNIELRKLRKDMGMIFQGFNIMNSKNIYDNVALPLQVWKKDKKYIDEKVREL 120 Query: 121 LRLVELTDKIRSRPSQLSGGQKQRVAIARALAMNPKILLCDEATSALDPNITKSILALLK 180 L+LV L +K +S P +LSGGQKQRVAIARAL M PK+LLCDEATSALDP TKSIL L++ Sbjct: 121 LKLVGLENKAKSYPRELSGGQKQRVAIARALTMEPKVLLCDEATSALDPETTKSILKLIQ 180 Query: 181 KINRELGITIVIVTHQMEVVKEVCTDMALLSKGELQISGSVQDIFLGRSETLAELLGSAG 240 KIN+EL IT+V+VTHQMEV+KE+C +AL+ ++ G V+D+FL L +++ Sbjct: 181 KINKELKITVVVVTHQMEVIKEICNRIALIDGRKVSAYGEVKDLFLRPEGELKKIIEQEE 240 Query: 241 -MGQQGDKVVFEMVQRPGQNDLLSRFATATGIRFEVVWGGLDRYADSIAGAFTLAVDKDD 299 + +G + Q +++ A + F +VWG L+ + + G+ + +++D Sbjct: 241 LLPNEGVNIKLFFPSNASQQSVITSMARELNVDFSIVWGKLESFRKEVLGSLIINIEEDK 300 Query: 300 FPKAQAFLEDTDTEW 314 +L W Sbjct: 301 KVAICEYLNKKSILW 315 >ref|NP_281935.1| ABC transport system ATP-binding protein [Campylobacter jejuni subsp. jejuni NCTC 11168] pir||F81348 ABC transport system ATP-binding protein Cj0774c [imported] - Campylobacter jejuni (strain NCTC 11168) emb|CAB73039.1| ABC transport system ATP-binding protein [Campylobacter jejuni subsp. jejuni NCTC 11168] Length = 336 Score = 264 bits (675), Expect = 2e-69, Method: Compositional matrix adjust. Identities = 140/332 (42%), Positives = 204/332 (61%), Gaps = 18/332 (5%) Query: 1 MIEIKELYKSFGDKPVLSGINVTIGDGDIYGLVGISGAGKSTLLRCINGLETFERGTLRV 60 MI+IK L K +G + V++ +++ I G+IY +VG SGAGKSTLLRCINGLE ++ G+L+V Sbjct: 1 MIKIKNLKKYYGKELVINDVSLEIKKGEIYAIVGHSGAGKSTLLRCINGLENYQEGSLKV 60 Query: 61 NGTDISSL---HGAELRKFRSGIGMIFQQFSLLERKTVYENIMFPMK-----CYNYKK-- 110 +I L ELR R IGMIFQ F+L+ERK V+EN+ P++ C + K Sbjct: 61 FDQEIKDLSQKKSKELRMLRKDIGMIFQNFALMERKNVFENVAMPLRTHYTQCKFHAKLF 120 Query: 111 -------AEADARIHELLRLVELTDKIRSRPSQLSGGQKQRVAIARALAMNPKILLCDEA 163 E +++ LL +V L K +S P +LSGGQKQRVAIARALA+NPKILL DEA Sbjct: 121 NKEYMSEKEIAQKVNSLLEIVGLDHKNKSYPRELSGGQKQRVAIARALALNPKILLSDEA 180 Query: 164 TSALDPNITKSILALLKKINRELGITIVIVTHQMEVVKEVCTDMALLSKGELQISGSVQD 223 TSALDPN TK+IL L+ KIN E GIT+V+VTH+M+VVK++ LL G++ SG++ + Sbjct: 181 TSALDPNTTKNILELISKINAEFGITVVLVTHEMDVVKDIAQKALLLEHGQIIGSGAIDE 240 Query: 224 IFLGRSETLAELLGSAG-MGQQGDKVVFEMVQRPGQNDLLSRFATATGIRFEVVWGGLDR 282 +FL + + E LG + + + G + + QN +++ A I F +VWG +++ Sbjct: 241 LFLRPNAKMKEFLGESDFLPEHGLNIKLYFPKEVAQNSVITHMARTLNIDFNIVWGKIEK 300 Query: 283 YADSIAGAFTLAVDKDDFPKAQAFLEDTDTEW 314 G + +++ D K ++E + W Sbjct: 301 LNGKALGNLVININEKDKDKVLDYIEKSGVLW 332 >ref|NP_742284.1| ABC transporter, ATP-binding protein [Pseudomonas putida KT2440] gb|AAN65748.1| ABC transporter, ATP-binding protein [Pseudomonas putida KT2440] Length = 335 Score = 244 bits (622), Expect = 2e-63, Method: Compositional matrix adjust. Identities = 142/337 (42%), Positives = 201/337 (59%), Gaps = 29/337 (8%) Query: 1 MIEIKELYKSFG----DKPVLSGINVTIGDGDIYGLVGISGAGKSTLLRCINGLETFERG 56 MIE ++++K++ + P L+ ++TI DG ++GL+G SGAGKST+LR IN LE G Sbjct: 1 MIEFQQVHKTYRVAGREIPALNPTSLTIEDGQVFGLIGHSGAGKSTMLRLINRLEEPSGG 60 Query: 57 TLRVNGTDISSLHGAELRKFRSGIGMIFQQFSLLERKTVYENIMFPMKCY-NYKKAEADA 115 T+ V+G D+++ + ++LR FR +GMIFQ F+LL KTV +N+ P+ ++E D Sbjct: 61 TIIVDGEDVTAFNASQLRGFRQQVGMIFQHFNLLASKTVADNVALPLALAGELSRSEIDK 120 Query: 116 RIHELLRLVELTDKIRSRPSQLSGGQKQRVAIARALAMNPKILLCDEATSALDPNITKSI 175 R+ ELL V L+D + P+QLSGGQKQRV IARAL+ NPKILLCDEATSALDP T S+ Sbjct: 121 RVTELLARVGLSDHAKKYPAQLSGGQKQRVGIARALSTNPKILLCDEATSALDPQTTASV 180 Query: 176 LALLKKINRELGITIVIVTHQMEVVKEVCTDMALLSKGELQISGSVQDIFLGRSETLAEL 235 L LL +INREL +TIV++TH+M+V++ VC +A++ G++ GSV ++FL + Sbjct: 181 LQLLAEINRELKLTIVLITHEMDVIRRVCDRVAVMDAGQIVEQGSVAEVFLHPQHPTTKR 240 Query: 236 LGSAGMGQQGDKVVFEMVQR------PG-------QND-----LLSRFATATGIRFEVVW 277 Q D+ V E QR PG Q D LL A TG+ + ++ Sbjct: 241 F------VQEDEQVDEGEQRDDFAHVPGRIVRLTFQGDATYAPLLGTVARETGVDYSILA 294 Query: 278 GGLDRYADSIAGAFTLAVDKDDFPKAQAFLEDTDTEW 314 G +DR D G TLA+ D A A + D Sbjct: 295 GRIDRIKDVPYGQLTLALIGGDMEAAFARFKAADVHM 331 Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF Posted date: Mar 24, 2004 1:53 AM Number of letters in database: 757,237,578 Number of sequences in database: 2,715,099 Lambda K H 0.320 0.138 0.388 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 2715099 Number of Hits to DB: 433,015,048 Number of extensions: 16838030 Number of successful extensions: 119669 Number of sequences better than 1.0e-05: 22614 Number of HSP's gapped: 93881 Number of HSP's successfully gapped: 24334 Length of query: 317 Length of database: 757,237,578 Length adjustment: 125 Effective length of query: 192 Effective length of database: 417,850,203 Effective search space: 80227238976 Effective search space used: 80227238976 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 126 (53.1 bits)