BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0342.0040.p (561 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF 2,715,099 sequences; 757,237,578 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gb|EAK13619.1| unknown [environmental sequence] 73 2e-11 gb|EAJ05375.1| unknown [environmental sequence] 72 3e-11 gb|EAI56663.1| unknown [environmental sequence] 69 4e-10 gb|EAK50208.1| unknown [environmental sequence] 67 1e-09 gb|EAH43958.1| unknown [environmental sequence] 64 1e-08 >gb|EAK13619.1| unknown [environmental sequence] Length = 352 Score = 73.2 bits (178), Expect = 2e-11, Method: Compositional matrix adjust. Identities = 95/346 (27%), Positives = 145/346 (41%), Gaps = 68/346 (19%) Query: 217 GGVGISTVQLDDGKVLVSLLIPGSPADQYGIKLGAEIISWDGKDVKKALDETSWSENPPA 276 GG+GI V ++ G V V I G+PA + G+K G I+ DG+ V+ Sbjct: 64 GGLGIE-VGMEAGVVKVVAPIDGTPAARAGLKAGDYIVKIDGEQVQ-------------- 108 Query: 277 TEGHRILNQGRFLARAPIGQNIQVKFRNQDDPAIITAALTAYDDQYEXXXXXXXXXXXED 336 + L + L R P+G I + R + I A + E Sbjct: 109 ---GKSLMEAVKLMRGPVGSTIDLTIRRKG----IKKAFSK----------TVKREIIEI 151 Query: 337 PPVEGQILKENYGYVKIRYFLPGATQSDPAKALEDTIKEFQEK-QVKGIIIDLRDNPGGD 395 VE +ILK+N GY+K+ F S+ +K L D IK + K + G I+DLR+NPGG Sbjct: 152 KSVESKILKKNIGYLKLNAF-----NSNSSKQLFDQIKNIENKNKTSGYILDLRNNPGGL 206 Query: 396 DDLVAQMAGHFVNRKRIFEYVSYYNRNTGRFEINRAETRTVQPSRIYFPGKIAVLINHNT 455 +A F++ I + RF + + +P + VLIN+ + Sbjct: 207 LTQAINVADFFLDDGEIVSTRGRKSIENRRFFAKKGDKVKGKP--------LIVLINNGS 258 Query: 456 ASSGEGLPLILKGMPNVKIIGFTSTNGSFGIVSAPIEVKMPEGYVVQ-----FPDGRSLN 510 AS+ E + LK I+G +ST G G V + I +K G + P G+S++ Sbjct: 259 ASASEIVAGALKDHKRAIILG-SSTYGK-GSVQSIIPLKNGGGIRITISKYYLPSGQSIS 316 Query: 511 LDYKIQGDSDERGQGGVTPDITVPMNGQTFKMKFIEGQDVELDYAL 556 + GV PDI V F++ D +L+YAL Sbjct: 317 -------------EVGVKPDIFVDDENDDFQIN--TDTDSQLNYAL 347 >gb|EAJ05375.1| unknown [environmental sequence] Length = 403 Score = 72.4 bits (176), Expect = 3e-11, Method: Compositional matrix adjust. Identities = 87/355 (24%), Positives = 151/355 (42%), Gaps = 46/355 (12%) Query: 131 KSYTQAFIAMNERLSTEYPFGDWKKVDWAAKKNKYGPLFRQAEISQDPNLYYKTLRDYLF 190 K QAF+ + + Y + D DW A K Y PL A ++ + ++ + Sbjct: 19 KESWQAFV---QTVEDNYAYLDTAPTDWEALKTYYQPLAINATTQEEFVDVLQVVKQF-- 73 Query: 191 SFRDGHIQI--VNEHLYD----GNSVFKNEVGGGVGISTVQLDDGKVLVSLLIPGSPADQ 244 F D H + +NE Y G+ ++ + G DD +++ + GS A Sbjct: 74 -FIDPHFNVSPLNEADYSVTPTGSDIWVEKQG----------DD--FVITRIKAGSAAAN 120 Query: 245 YGIKLGAEIISWDGKDVKKALDETSWSENPPATEGHRILNQGRFLA-RAPIGQNIQVKFR 303 + LG I+ DG+ + A+ + P T+ H+ L R ++I+V Sbjct: 121 SQLALGDVIVGIDGESTEAAIHRVFGNTLLPLTDAHKTWAVNVALGGRRNQERHIEVASD 180 Query: 304 NQDDPAIITAALTAYDDQYEXXXXXXXXXXXEDPPVEGQILKENYGYVKIRYFLPGATQS 363 D ++ AA +YD + P + Q KE GY++ L S Sbjct: 181 FDDAKRVLLAA--SYD--------AINLLRTKAPLIVKQ--KEGIGYIRFNNNL---GNS 225 Query: 364 DPAKALEDTIKEFQEKQVKGIIIDLRDNPGGDDDLVAQ-MAGHFVNRKRIFEYVSYYNRN 422 + +A ++ ++ + Q G++IDLR+ P G + VA+ + GHFVN K ++ Y +N Sbjct: 226 ETVRAFKEALESLESTQ--GLVIDLRNTPSGGNTGVAEPILGHFVNAKTAYQ--GYKIQN 281 Query: 423 TGR-FEINRAETRTVQPSRIYFPGKIAVLINHNTASSGEGLPLILKGMPNVKIIG 476 G+ ++ V PS Y+ + VL+ H T S GEG+ + + +IG Sbjct: 282 AGKSYQEAELHLAYVTPSLPYYSKPVVVLVGHWTGSMGEGMAIGFDAIGAKAVIG 336 >gb|EAI56663.1| unknown [environmental sequence] Length = 360 Score = 68.6 bits (166), Expect = 4e-10, Method: Compositional matrix adjust. Identities = 85/358 (23%), Positives = 146/358 (40%), Gaps = 85/358 (23%) Query: 217 GGVGISTVQLDDGKVLVSLLIPGSPADQYGIKLGAEIISWDGKDVKKALDETSWSENPPA 276 GG+GI V ++ G V V + GSPA++ G+K G I+ N Sbjct: 73 GGLGIE-VGMEFGVVKVITPMDGSPAEREGVKAGDYIVKI----------------NETQ 115 Query: 277 TEGHRILNQGRFLARAPIGQNIQVKFRNQDDPAIITAALTAYDDQYEXXXXXXXXXXXED 336 +G +L + L R P+G ++++ R + + AL E Sbjct: 116 VQGKTLL-EAVELMRGPVGSSLEITVRRKG----VKKALV----------FKIVREIIEV 160 Query: 337 PPVEGQILKENYGYVKIRYFLPGATQSDPAKALEDTIKEFQEKQVKGIIIDLRDNPGGDD 396 V+ +I+ EN GY+++ F + +K ++D IK F+ ++ ++DLR+NPGG Sbjct: 161 KSVKSKIIDENVGYIRLTSF-----NENSSKQIKDKIKNFKRNKINKYVLDLRNNPGGLL 215 Query: 397 DLVAQMAGHFVNRKRIFEYVSYYNRNTGRFEINRAETRTVQPSRIYFPGK--------IA 448 +++ F+N EI ++R +R YF K + Sbjct: 216 SQAVKISDFFLNNG----------------EIVSTKSRKSSENRKYFAKKGDIINGETLI 259 Query: 449 VLINHNTASSGEGLPLILKGMPNVKIIGFTS-TNGSFGIV-----SAPIEVKMPEGYVVQ 502 VLIN+ +AS+ E + LK +IG S GS + I + + + Y Sbjct: 260 VLINYGSASASEIVAGALKEHKRAIVIGENSYGKGSVQSIIPLKNKGAIRLTISKYY--- 316 Query: 503 FPDGRSLNLDYKIQGDSDERGQGGVTPDITVPMNGQTFKMKFIEGQDVELDYALASFN 560 P G+S++ G+ PDI V + F++ D +LD+A+ N Sbjct: 317 LPSGKSIS-------------GTGIVPDIEVLESSDDFRIN--TKTDNQLDFAIKLLN 359 >gb|EAK50208.1| unknown [environmental sequence] Length = 318 Score = 67.0 bits (162), Expect = 1e-09, Method: Compositional matrix adjust. Identities = 88/353 (24%), Positives = 149/353 (42%), Gaps = 74/353 (20%) Query: 217 GGVGISTVQLDDGKVLVSLLIPGSPADQYGIKLGAEIISWDGKDVK-KALDETSWSENPP 275 GG+GI V ++ G V V I SPA + G+K G I+ D V+ K+L E Sbjct: 30 GGLGIE-VGMEYGVVKVISPIDNSPASKVGVKAGDYIVKIDDIQVQGKSLTE-------- 80 Query: 276 ATEGHRILNQGRFLARAPIGQNIQVKFRNQDDPAIITAALTAYDDQYEXXXXXXXXXXXE 335 A E L R +G +I++ R + + +T +T + Sbjct: 81 AVE----------LMRGRVGTDIEITVRRRGEKKALTFIIT--------------RDIIK 116 Query: 336 DPPVEGQILKENYGYVKIRYFLPGATQSDPAKALEDTIKEF-QEKQVKGIIIDLRDNPGG 394 V+ +I+ E GY+++ F + + ++D IKEF + K++K I+DLR+NPGG Sbjct: 117 IASVKSRIIDEKTGYLRLTSF-----NENSSDQIKDKIKEFNKNKKIKNYILDLRNNPGG 171 Query: 395 DDDLVAQMAGHFVNRKRIFEYVSYYNRNTGRFEINRAETRTVQPSRIYFPGKIAVLINHN 454 +++ F++ I S ++ + + I + VLIN+ Sbjct: 172 LLSQAIKISDFFLDNGEIVSTKSKRKYENRKWFAKKGD--------ILKDNTMIVLINYG 223 Query: 455 TASSGEGLPLILKGMPNVKIIGFTSTNGSFGIVS-------APIEVKMPEGYVVQFPDGR 507 +AS+ E + L+ ++G ST G + S I + + + Y P G+ Sbjct: 224 SASAAEIVAGALQDHKRAILVG-ESTYGKGSVQSIIPLKNDGAIRLTVSKYY---LPSGK 279 Query: 508 SLNLDYKIQGDSDERGQGGVTPDITVPMNGQTFKMKFIEGQDVELDYALASFN 560 S++ GVTPDI + N + FK+ D +L+YAL N Sbjct: 280 SIS-------------DVGVTPDIEISENSEKFKLN--TETDNQLNYALKLLN 317 >gb|EAH43958.1| unknown [environmental sequence] Length = 294 Score = 63.5 bits (153), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 88/365 (24%), Positives = 150/365 (41%), Gaps = 98/365 (26%) Query: 217 GGVGISTVQLDDGKVLVSLLIPGSPADQYGIKLGAEIISWD-----GKDVKKALDETSWS 271 GG+GI V ++ G V V I SPA + GIK G I+ + GK + +A+D Sbjct: 6 GGLGIE-VGMEAGVVKVISPIDNSPASKVGIKAGDYIVKINDIQVQGKSLTEAVD----- 59 Query: 272 ENPPATEGHRILNQGRFLARAPIGQNIQVKFRNQDDPAIITAALTAYDDQYEXXXXXXXX 331 L R P+G +I++ R + +T +T Sbjct: 60 -----------------LMRGPVGTDIEITVRRVGEKKALTFIIT--------------R 88 Query: 332 XXXEDPPVEGQILKENYGYVKIRYFLPGATQSDPAKALEDTIKEFQE-KQVKGIIIDLRD 390 + V+ +I+ + GY+++ F + + +ED IKEF++ +++K I+DLR+ Sbjct: 89 DIIKVASVKSEIIDDRTGYIRLTSF-----NENSSDQIEDKIKEFKKNEKIKNYILDLRN 143 Query: 391 NPGGDDDLVAQMAGHFVNR--------KRIFEYVSYYNRNTGRFEINRAETRTVQPSRIY 442 NPGG +++ F+ KR FE ++ + ++ ET Sbjct: 144 NPGGLLSQAIKISDFFLENGEIVSTKSKRKFENRKWFAKGG---DVLNGET--------- 191 Query: 443 FPGKIAVLINHNTASSGEGLPLILKGMPNVKIIGFTSTNGSFGIVS-------APIEVKM 495 + VLIN+ +AS+ E + L+ ++G ST G + S I + + Sbjct: 192 ----LIVLINYGSASASEIVAGALQDHKRAVLVG-ESTYGKGSVQSIIPLKNNGAIRLTV 246 Query: 496 PEGYVVQFPDGRSLNLDYKIQGDSDERGQGGVTPDITVPMNGQTFKMKFIEGQDVELDYA 555 + Y P G+S++ Q GVTPDI + F++ D +L YA Sbjct: 247 SKYY---LPSGKSIS-------------QVGVTPDIEIAEGSDDFRIN--TDTDNQLSYA 288 Query: 556 LASFN 560 L N Sbjct: 289 LKLLN 293 Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF Posted date: Mar 24, 2004 1:53 AM Number of letters in database: 757,237,578 Number of sequences in database: 2,715,099 Lambda K H 0.321 0.140 0.417 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 2715099 Number of Hits to DB: 875,569,976 Number of extensions: 38789524 Number of successful extensions: 90102 Number of sequences better than 1.0e-05: 129 Number of HSP's gapped: 90225 Number of HSP's successfully gapped: 129 Length of query: 561 Length of database: 757,237,578 Length adjustment: 131 Effective length of query: 430 Effective length of database: 401,559,609 Effective search space: 172670631870 Effective search space used: 172670631870 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 129 (54.3 bits)